Wall clock time and date at job start Mon Mar 30 2020 01:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38292 * 119.97433 * 2 1 4 4 C 1.38238 * 120.11294 * 180.29704 * 3 2 1 5 5 C 1.38170 * 120.05540 * 359.44527 * 4 3 2 6 6 C 1.50699 * 120.02906 * 180.25180 * 5 4 3 7 7 N 1.46898 * 109.47393 * 260.00217 * 6 5 4 8 8 C 1.46897 * 111.00359 * 189.99954 * 7 6 5 9 9 C 1.50696 * 109.47242 * 75.54081 * 8 7 6 10 10 H 1.08002 * 120.00073 * 355.67683 * 9 8 7 11 11 C 1.37872 * 120.00271 * 175.66714 * 9 8 7 12 12 N 1.31516 * 119.99972 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00332 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46789 * 60.00104 * 13 11 9 15 15 H 1.48497 * 109.47271 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47012 * 300.00574 * 13 11 9 17 17 C 1.46906 * 110.99874 * 66.04588 * 7 6 5 18 18 C 1.52996 * 109.47005 * 195.58309 * 17 7 6 19 19 C 1.53002 * 117.50019 * 244.14270 * 18 17 7 20 20 C 1.53000 * 117.49741 * 175.48531 * 18 17 7 21 21 C 1.38705 * 119.94298 * 0.27871 * 5 4 3 22 22 O 1.35904 * 120.05685 * 179.97438 * 21 5 4 23 23 C 1.38125 * 119.97414 * 179.74559 * 2 1 3 24 24 H 1.09000 * 109.47337 * 270.25564 * 1 2 3 25 25 H 1.08997 * 109.47403 * 30.25433 * 1 2 3 26 26 H 1.09004 * 109.47241 * 150.25668 * 1 2 3 27 27 H 1.07999 * 119.94454 * 0.04116 * 3 2 1 28 28 H 1.08001 * 119.97751 * 179.72606 * 4 3 2 29 29 H 1.09002 * 109.47152 * 20.00509 * 6 5 4 30 30 H 1.09000 * 109.47417 * 140.00259 * 6 5 4 31 31 H 1.08998 * 109.47603 * 195.54880 * 8 7 6 32 32 H 1.09010 * 109.46920 * 315.54330 * 8 7 6 33 33 H 0.97005 * 119.99807 * 180.02562 * 12 11 9 34 34 H 1.08995 * 109.46928 * 315.58410 * 17 7 6 35 35 H 1.08998 * 109.46677 * 75.58297 * 17 7 6 36 36 H 1.08994 * 115.55331 * 29.81176 * 18 17 7 37 37 H 1.09006 * 117.49842 * 0.02562 * 19 18 17 38 38 H 1.08999 * 117.50349 * 145.01806 * 19 18 17 39 39 H 1.09004 * 117.49766 * 214.97595 * 20 18 17 40 40 H 1.08998 * 117.50239 * 359.97438 * 20 18 17 41 41 H 0.96700 * 114.00145 * 89.99804 * 22 21 5 42 42 H 1.08002 * 120.02557 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5802 1.2013 -0.0062 5 6 4.2752 0.0071 -0.0008 6 6 5.7821 0.0115 -0.0019 7 7 6.2717 -0.2342 -1.3649 8 6 7.7212 -0.4725 -1.3688 9 6 8.0034 -1.8606 -0.8544 10 1 7.1945 -2.4760 -0.4892 11 6 9.2942 -2.3450 -0.8502 12 7 10.2793 -1.5955 -1.2947 13 14 9.6441 -4.0658 -0.2132 14 1 8.8918 -5.0563 -1.0246 15 1 11.0990 -4.3449 -0.3146 16 1 9.2193 -4.1640 1.2064 17 6 5.9183 0.8764 -2.2593 18 6 6.0865 0.4330 -3.7139 19 6 7.1497 1.1463 -4.5515 20 6 5.6650 1.4182 -4.8060 21 6 3.5845 -1.1958 0.0049 22 8 4.2657 -2.3718 0.0097 23 6 2.1970 -1.1965 0.0053 24 1 -0.3634 0.0046 1.0276 25 1 -0.3634 0.8877 -0.5178 26 1 -0.3634 -0.8923 -0.5099 27 1 1.6565 2.1325 0.0007 28 1 4.1176 2.1381 -0.0107 29 1 6.1429 0.9799 0.3447 30 1 6.1483 -0.7715 0.6622 31 1 8.1024 -0.3773 -2.3855 32 1 8.2115 0.2595 -0.7270 33 1 11.1874 -1.9365 -1.2920 34 1 4.8824 1.1673 -2.0856 35 1 6.5724 1.7253 -2.0603 36 1 5.9248 -0.6281 -3.9037 37 1 7.7297 1.9313 -4.0661 38 1 7.6873 0.5547 -5.2926 39 1 5.2263 1.0052 -5.7144 40 1 5.2675 2.3821 -4.4882 41 1 4.4635 -2.7082 0.8945 42 1 1.6570 -2.1318 0.0090 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876691114.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:55 Heat of formation + Delta-G solvation = 4.227514 kcal Electronic energy + Delta-G solvation = -21517.545364 eV Core-core repulsion = 18463.254914 eV Total energy + Delta-G solvation = -3054.290450 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.76741 -37.59199 -36.46729 -35.42653 -32.89736 -31.97753 -29.63706 -28.32578 -27.53221 -25.23958 -23.35030 -22.43167 -21.91838 -21.22304 -20.34914 -19.45904 -17.52568 -16.33952 -15.77711 -15.76529 -15.10234 -14.85270 -14.55638 -14.25268 -13.81636 -13.61485 -13.42849 -13.28986 -12.76365 -12.46730 -12.15285 -11.92357 -11.90413 -11.51713 -11.37755 -11.12780 -11.09349 -10.82769 -10.63898 -10.61111 -10.54813 -10.06566 -9.85556 -9.74442 -9.28240 -9.12068 -8.54515 -8.34001 -8.13546 -7.14102 -5.93076 -3.92819 1.50058 1.52796 3.37999 3.42357 3.45829 3.81060 4.29827 4.50333 4.55139 4.92327 4.96250 5.02306 5.22168 5.32327 5.37679 5.41327 5.43301 5.46908 5.53456 5.68192 5.74526 5.80377 5.96673 5.98571 6.05829 6.13606 6.16604 6.25787 6.31945 6.40034 6.52038 6.53939 6.56497 6.68665 6.84556 6.92231 7.07905 7.35107 7.43828 7.93779 8.12256 8.21937 8.30993 8.65571 9.16215 9.70339 11.17628 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014471 B = 0.006029 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.465017 B = 4642.954051 C = 6036.169611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.083 4.083 3 C -0.136 4.136 4 C -0.101 4.101 5 C -0.096 4.096 6 C 0.107 3.893 7 N -0.519 5.519 8 C 0.193 3.807 9 C -0.498 4.498 10 H 0.066 0.934 11 C 0.053 3.947 12 N -0.902 5.902 13 Si 0.896 3.104 14 H -0.277 1.277 15 H -0.290 1.290 16 H -0.279 1.279 17 C 0.084 3.916 18 C -0.125 4.125 19 C -0.178 4.178 20 C -0.190 4.190 21 C 0.137 3.863 22 O -0.478 6.478 23 C -0.153 4.153 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.025 0.975 30 H 0.090 0.910 31 H 0.040 0.960 32 H -0.015 1.015 33 H 0.259 0.741 34 H 0.064 0.936 35 H 0.021 0.979 36 H 0.111 0.889 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.384 0.616 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.872 5.649 1.951 16.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.083 4.083 3 C -0.154 4.154 4 C -0.120 4.120 5 C -0.097 4.097 6 C -0.021 4.021 7 N -0.243 5.243 8 C 0.068 3.932 9 C -0.537 4.537 10 H 0.085 0.915 11 C -0.147 4.147 12 N -0.542 5.542 13 Si 0.724 3.276 14 H -0.203 1.203 15 H -0.216 1.216 16 H -0.205 1.205 17 C -0.045 4.045 18 C -0.144 4.144 19 C -0.215 4.215 20 C -0.228 4.228 21 C 0.092 3.908 22 O -0.287 6.287 23 C -0.172 4.172 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.135 0.865 28 H 0.137 0.863 29 H 0.043 0.957 30 H 0.108 0.892 31 H 0.058 0.942 32 H 0.002 0.998 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.039 0.961 36 H 0.129 0.871 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.239 0.761 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.903 5.264 1.137 16.790 hybrid contribution 0.866 -0.244 1.009 1.352 sum -15.037 5.020 2.146 15.998 Atomic orbital electron populations 1.20746 0.91455 1.02540 1.01962 1.19658 0.95676 0.92765 1.00226 1.20897 0.94037 0.97223 1.03236 1.20960 0.93913 0.97329 0.99791 1.20462 0.97080 0.92369 0.99827 1.20789 0.88413 0.99879 0.93029 1.62085 1.18657 1.37924 1.05592 1.19777 0.79802 0.96065 0.97507 1.21195 0.92618 0.99528 1.40338 0.91547 1.24976 0.96298 0.97518 0.95931 1.69958 0.99875 1.36792 1.47598 0.86601 0.76785 0.84961 0.79235 1.20250 1.21597 1.20466 1.21627 0.99255 0.92335 0.91253 1.22227 1.02323 0.98234 0.91612 1.22964 0.91237 1.03554 1.03792 1.22932 0.98308 1.00818 1.00725 1.18274 0.89106 0.85533 0.97927 1.84964 1.76103 1.35280 1.32356 1.21273 0.93595 0.98002 1.04331 0.91482 0.91733 0.91737 0.86462 0.86268 0.95736 0.89214 0.94227 0.99757 0.93099 0.91742 0.96133 0.87136 0.89309 0.89208 0.89434 0.89600 0.76075 0.85971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.01 36.00 0.36 -0.64 16 2 C -0.08 -1.03 5.88 -104.65 -0.62 -1.64 16 3 C -0.14 -1.71 9.70 -39.56 -0.38 -2.09 16 4 C -0.10 -1.45 8.32 -39.61 -0.33 -1.78 16 5 C -0.10 -1.60 4.65 -104.47 -0.49 -2.09 16 6 C 0.11 2.07 4.58 -4.98 -0.02 2.05 16 7 N -0.52 -11.36 4.38 -237.52 -1.04 -12.40 16 8 C 0.19 5.06 4.59 -4.98 -0.02 5.03 16 9 C -0.50 -14.00 8.60 -34.44 -0.30 -14.30 16 10 H 0.07 1.86 7.66 -52.49 -0.40 1.45 16 11 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 12 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 13 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 C 0.08 1.60 5.11 -3.82 -0.02 1.58 16 18 C -0.13 -2.32 4.96 -90.62 -0.45 -2.77 16 19 C -0.18 -3.03 9.97 -26.69 -0.27 -3.30 16 20 C -0.19 -2.85 10.25 -26.69 -0.27 -3.12 16 21 C 0.14 2.23 6.68 -39.22 -0.26 1.97 16 22 O -0.48 -8.17 12.74 -19.44 -0.25 -8.42 16 23 C -0.15 -2.14 9.64 -39.43 -0.38 -2.52 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 26 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 27 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 28 H 0.12 1.55 8.04 -52.49 -0.42 1.13 16 29 H 0.02 0.46 7.98 -51.93 -0.41 0.05 16 30 H 0.09 1.86 7.03 -51.93 -0.36 1.49 16 31 H 0.04 1.12 6.93 -51.93 -0.36 0.76 16 32 H -0.02 -0.43 8.00 -51.92 -0.42 -0.84 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.06 1.15 5.88 -51.93 -0.31 0.84 16 35 H 0.02 0.40 7.79 -51.93 -0.40 -0.01 16 36 H 0.11 2.26 8.14 -51.93 -0.42 1.84 16 37 H 0.09 1.51 8.03 -51.93 -0.42 1.09 16 38 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 39 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.38 4.84 9.06 45.56 0.41 5.25 16 42 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 347.37 15.07 5.23 5.23 Total: -1.00 -31.60 347.37 -9.91 -41.51 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -6.03 Total: 5.68 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -3.54 Total: -22.20 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: -0.30 Total: -38.66 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -0.25 Total: -8.42 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.60 -9.91 -41.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876691114.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.735 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds