Wall clock time and date at job start Mon Mar 30 2020 01:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38292 * 119.97433 * 2 1 4 4 C 1.38238 * 120.11294 * 180.29704 * 3 2 1 5 5 C 1.38170 * 120.05540 * 359.44527 * 4 3 2 6 6 C 1.50699 * 120.02906 * 180.25180 * 5 4 3 7 7 N 1.46898 * 109.47393 * 260.00217 * 6 5 4 8 8 C 1.46897 * 111.00359 * 189.99954 * 7 6 5 9 9 C 1.50696 * 109.47242 * 75.54081 * 8 7 6 10 10 H 1.08002 * 120.00073 * 355.67683 * 9 8 7 11 11 C 1.37872 * 120.00271 * 175.66714 * 9 8 7 12 12 N 1.31516 * 119.99972 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00332 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46789 * 60.00104 * 13 11 9 15 15 H 1.48497 * 109.47271 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47012 * 300.00574 * 13 11 9 17 17 C 1.46906 * 110.99874 * 66.04588 * 7 6 5 18 18 C 1.52996 * 109.47005 * 195.58309 * 17 7 6 19 19 C 1.53002 * 117.50019 * 244.14270 * 18 17 7 20 20 C 1.53000 * 117.49741 * 175.48531 * 18 17 7 21 21 C 1.38705 * 119.94298 * 0.27871 * 5 4 3 22 22 O 1.35904 * 120.05685 * 179.97438 * 21 5 4 23 23 C 1.38125 * 119.97414 * 179.74559 * 2 1 3 24 24 H 1.09000 * 109.47337 * 270.25564 * 1 2 3 25 25 H 1.08997 * 109.47403 * 30.25433 * 1 2 3 26 26 H 1.09004 * 109.47241 * 150.25668 * 1 2 3 27 27 H 1.07999 * 119.94454 * 0.04116 * 3 2 1 28 28 H 1.08001 * 119.97751 * 179.72606 * 4 3 2 29 29 H 1.09002 * 109.47152 * 20.00509 * 6 5 4 30 30 H 1.09000 * 109.47417 * 140.00259 * 6 5 4 31 31 H 1.08998 * 109.47603 * 195.54880 * 8 7 6 32 32 H 1.09010 * 109.46920 * 315.54330 * 8 7 6 33 33 H 0.97005 * 119.99807 * 180.02562 * 12 11 9 34 34 H 1.08995 * 109.46928 * 315.58410 * 17 7 6 35 35 H 1.08998 * 109.46677 * 75.58297 * 17 7 6 36 36 H 1.08994 * 115.55331 * 29.81176 * 18 17 7 37 37 H 1.09006 * 117.49842 * 0.02562 * 19 18 17 38 38 H 1.08999 * 117.50349 * 145.01806 * 19 18 17 39 39 H 1.09004 * 117.49766 * 214.97595 * 20 18 17 40 40 H 1.08998 * 117.50239 * 359.97438 * 20 18 17 41 41 H 0.96700 * 114.00145 * 89.99804 * 22 21 5 42 42 H 1.08002 * 120.02557 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5802 1.2013 -0.0062 5 6 4.2752 0.0071 -0.0008 6 6 5.7821 0.0115 -0.0019 7 7 6.2717 -0.2342 -1.3649 8 6 7.7212 -0.4725 -1.3688 9 6 8.0034 -1.8606 -0.8544 10 1 7.1945 -2.4760 -0.4892 11 6 9.2942 -2.3450 -0.8502 12 7 10.2793 -1.5955 -1.2947 13 14 9.6441 -4.0658 -0.2132 14 1 8.8918 -5.0563 -1.0246 15 1 11.0990 -4.3449 -0.3146 16 1 9.2193 -4.1640 1.2064 17 6 5.9183 0.8764 -2.2593 18 6 6.0865 0.4330 -3.7139 19 6 7.1497 1.1463 -4.5515 20 6 5.6650 1.4182 -4.8060 21 6 3.5845 -1.1958 0.0049 22 8 4.2657 -2.3718 0.0097 23 6 2.1970 -1.1965 0.0053 24 1 -0.3634 0.0046 1.0276 25 1 -0.3634 0.8877 -0.5178 26 1 -0.3634 -0.8923 -0.5099 27 1 1.6565 2.1325 0.0007 28 1 4.1176 2.1381 -0.0107 29 1 6.1429 0.9799 0.3447 30 1 6.1483 -0.7715 0.6622 31 1 8.1024 -0.3773 -2.3855 32 1 8.2115 0.2595 -0.7270 33 1 11.1874 -1.9365 -1.2920 34 1 4.8824 1.1673 -2.0856 35 1 6.5724 1.7253 -2.0603 36 1 5.9248 -0.6281 -3.9037 37 1 7.7297 1.9313 -4.0661 38 1 7.6873 0.5547 -5.2926 39 1 5.2263 1.0052 -5.7144 40 1 5.2675 2.3821 -4.4882 41 1 4.4635 -2.7082 0.8945 42 1 1.6570 -2.1318 0.0090 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876691114.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:54 Heat of formation + Delta-G solvation = -15.694929 kcal Electronic energy + Delta-G solvation = -21518.409266 eV Core-core repulsion = 18463.254914 eV Total energy + Delta-G solvation = -3055.154352 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.95449 -39.08753 -37.63916 -36.95975 -34.77380 -33.42551 -30.74290 -29.69929 -29.31453 -26.70876 -25.05596 -23.53947 -23.20516 -22.86359 -21.60900 -21.03475 -18.73166 -18.46670 -17.18524 -16.95924 -16.69301 -16.23946 -16.01841 -15.78722 -15.33243 -14.89459 -14.68691 -14.34205 -14.27491 -13.92357 -13.43570 -13.35539 -13.25687 -13.12374 -12.71021 -12.58088 -12.44713 -12.37755 -12.33596 -12.24538 -12.01295 -11.84771 -11.39770 -11.17009 -11.09207 -10.71569 -10.53117 -9.64164 -9.28315 -8.92714 -8.14088 -6.22502 0.38981 0.44335 1.40648 1.44522 1.52110 2.43122 2.70245 2.93803 3.17288 3.39807 3.47442 3.86004 3.92217 4.00673 4.06229 4.13223 4.22171 4.31647 4.51193 4.55493 4.60952 4.67068 4.73881 4.75971 4.80232 4.87033 4.90918 5.00787 5.03240 5.14064 5.19527 5.24493 5.29737 5.33110 5.41274 5.48639 5.67450 5.72021 5.74548 6.04169 6.15090 6.44300 6.69976 6.93540 7.01096 7.45897 8.96226 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014471 B = 0.006029 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.465017 B = 4642.954051 C = 6036.169611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.075 4.075 3 C -0.131 4.131 4 C -0.103 4.103 5 C -0.120 4.120 6 C 0.113 3.887 7 N -0.527 5.527 8 C 0.212 3.788 9 C -0.512 4.512 10 H 0.063 0.937 11 C 0.001 3.999 12 N -0.937 5.937 13 Si 0.966 3.034 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.266 1.266 17 C 0.090 3.910 18 C -0.156 4.156 19 C -0.189 4.189 20 C -0.149 4.149 21 C 0.118 3.882 22 O -0.503 6.503 23 C -0.160 4.160 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.150 0.850 28 H 0.129 0.871 29 H 0.024 0.976 30 H 0.066 0.934 31 H 0.013 0.987 32 H -0.046 1.046 33 H 0.262 0.738 34 H 0.082 0.918 35 H 0.015 0.985 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.397 0.603 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.703 6.143 1.961 19.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.075 4.075 3 C -0.149 4.149 4 C -0.121 4.121 5 C -0.121 4.121 6 C -0.015 4.015 7 N -0.251 5.251 8 C 0.086 3.914 9 C -0.550 4.550 10 H 0.081 0.919 11 C -0.196 4.196 12 N -0.578 5.578 13 Si 0.791 3.209 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.191 1.191 17 C -0.038 4.038 18 C -0.175 4.175 19 C -0.226 4.226 20 C -0.186 4.186 21 C 0.073 3.927 22 O -0.315 6.315 23 C -0.178 4.178 24 H 0.101 0.899 25 H 0.099 0.901 26 H 0.089 0.911 27 H 0.168 0.832 28 H 0.147 0.853 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.031 0.969 32 H -0.028 1.028 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.033 0.967 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.254 0.746 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -18.761 5.765 1.160 19.661 hybrid contribution 1.663 -0.351 1.016 1.980 sum -17.098 5.414 2.175 18.066 Atomic orbital electron populations 1.20826 0.88632 1.03746 1.03352 1.20117 0.97670 0.91992 0.97769 1.21256 0.93220 0.98739 1.01708 1.21111 0.95002 0.96682 0.99352 1.20241 0.95001 0.93850 1.03049 1.20650 0.90900 0.98779 0.91129 1.62012 1.15529 1.39875 1.07639 1.19366 0.82456 0.94653 0.94878 1.21461 0.92834 1.00326 1.40391 0.91906 1.25860 0.95996 1.01801 0.95993 1.70092 1.00271 1.38791 1.48632 0.85493 0.76691 0.79579 0.79147 1.19842 1.21039 1.19058 1.21625 0.99892 0.91123 0.91130 1.22136 1.05300 0.97751 0.92269 1.22990 0.92665 1.03388 1.03600 1.23030 0.95941 1.00251 0.99362 1.18526 0.90199 0.84975 0.99044 1.84904 1.76643 1.35985 1.33934 1.21458 0.92544 0.99520 1.04282 0.89855 0.90057 0.91086 0.83206 0.85274 0.95812 0.91598 0.96916 1.02815 0.92961 0.89964 0.96675 0.89805 0.89715 0.89392 0.87365 0.87419 0.74595 0.84637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 10.01 71.23 0.71 -0.81 16 2 C -0.08 -1.63 5.88 -19.88 -0.12 -1.74 16 3 C -0.13 -2.86 9.70 22.28 0.22 -2.64 16 4 C -0.10 -2.78 8.32 22.25 0.19 -2.59 16 5 C -0.12 -4.03 4.65 -19.77 -0.09 -4.12 16 6 C 0.11 4.58 4.58 85.56 0.39 4.98 16 7 N -0.53 -24.16 4.38 -905.38 -3.96 -28.12 16 8 C 0.21 11.79 4.59 85.56 0.39 12.18 16 9 C -0.51 -29.99 8.60 25.60 0.22 -29.77 16 10 H 0.06 3.65 7.66 -2.91 -0.02 3.63 16 11 C 0.00 0.04 5.46 84.65 0.46 0.51 16 12 N -0.94 -57.85 13.29 21.45 0.28 -57.57 16 13 Si 0.97 45.72 29.54 68.60 2.03 47.74 16 14 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 15 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 C 0.09 3.53 5.11 86.30 0.44 3.97 16 18 C -0.16 -5.85 4.96 -10.79 -0.05 -5.90 16 19 C -0.19 -6.49 9.97 30.62 0.31 -6.18 16 20 C -0.15 -4.15 10.25 30.62 0.31 -3.84 16 21 C 0.12 3.83 6.68 22.50 0.15 3.98 16 22 O -0.50 -17.74 12.74 -92.47 -1.18 -18.92 16 23 C -0.16 -4.19 9.64 22.37 0.22 -3.97 16 24 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.08 0.91 8.09 -2.39 -0.02 0.89 16 26 H 0.07 0.93 8.08 -2.39 -0.02 0.91 16 27 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 28 H 0.13 3.15 8.04 -2.91 -0.02 3.12 16 29 H 0.02 0.94 7.98 -2.39 -0.02 0.92 16 30 H 0.07 2.91 7.03 -2.39 -0.02 2.90 16 31 H 0.01 0.76 6.93 -2.39 -0.02 0.75 16 32 H -0.05 -2.74 8.00 -2.38 -0.02 -2.76 16 33 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 34 H 0.08 2.88 5.88 -2.39 -0.01 2.87 16 35 H 0.02 0.60 7.79 -2.39 -0.02 0.58 16 36 H 0.08 3.58 8.14 -2.39 -0.02 3.56 16 37 H 0.08 2.94 8.03 -2.38 -0.02 2.92 16 38 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 39 H 0.11 2.61 8.14 -2.38 -0.02 2.59 16 40 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.40 10.55 9.06 -74.06 -0.67 9.88 16 42 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -70.68 347.37 1.24 -69.44 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.33 Total: 23.39 kcal Atomic # 6 Polarization: -39.70 SS G_CDS: 3.75 Total: -35.96 kcal Atomic # 7 Polarization: -82.02 SS G_CDS: -3.68 Total: -85.69 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -1.18 Total: -18.92 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -70.68 1.24 -69.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876691114.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.744 kcal (2) G-P(sol) polarization free energy of solvation -70.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds