Wall clock time and date at job start Mon Mar 30 2020 01:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38285 * 119.97260 * 2 1 4 4 C 1.38245 * 120.11334 * 179.72620 * 3 2 1 5 5 C 1.38166 * 120.05156 * 0.54324 * 4 3 2 6 6 C 1.50708 * 120.02517 * 179.74514 * 5 4 3 7 7 N 1.46895 * 109.47207 * 259.72851 * 6 5 4 8 8 C 1.46906 * 110.99647 * 180.02562 * 7 6 5 9 9 H 1.09000 * 110.01685 * 325.06263 * 8 7 6 10 10 C 1.53873 * 110.03251 * 86.45479 * 8 7 6 11 11 C 1.54265 * 106.59723 * 119.28193 * 10 8 7 12 12 C 1.54893 * 104.19597 * 23.61063 * 11 10 8 13 13 H 1.09005 * 110.75370 * 80.55760 * 12 11 10 14 14 C 1.50703 * 110.75769 * 203.73881 * 12 11 10 15 15 H 1.07995 * 119.99758 * 118.54464 * 14 12 11 16 16 C 1.37873 * 119.99707 * 298.54894 * 14 12 11 17 17 N 1.31522 * 119.99597 * 179.97438 * 16 14 12 18 18 Si 1.86799 * 120.00559 * 359.97438 * 16 14 12 19 19 H 1.48503 * 109.47293 * 89.99718 * 18 16 14 20 20 H 1.48495 * 109.47315 * 210.00291 * 18 16 14 21 21 H 1.48498 * 109.46870 * 329.99943 * 18 16 14 22 22 C 1.54270 * 110.03070 * 203.62373 * 8 7 6 23 23 C 1.38710 * 119.94859 * 359.48101 * 5 4 3 24 24 O 1.35891 * 120.05810 * 180.22947 * 23 5 4 25 25 C 1.38127 * 119.97357 * 180.02562 * 2 1 3 26 26 H 1.09001 * 109.47288 * 269.97941 * 1 2 3 27 27 H 1.09000 * 109.47134 * 29.97733 * 1 2 3 28 28 H 1.09001 * 109.47284 * 149.98039 * 1 2 3 29 29 H 1.08001 * 119.94410 * 359.97438 * 3 2 1 30 30 H 1.08003 * 119.97406 * 180.27699 * 4 3 2 31 31 H 1.08995 * 109.46484 * 139.72592 * 6 5 4 32 32 H 1.08999 * 109.47033 * 19.73237 * 6 5 4 33 33 H 1.00897 * 111.00420 * 303.95683 * 7 6 5 34 34 H 1.08996 * 110.02961 * 238.56824 * 10 8 7 35 35 H 1.09003 * 110.03167 * 359.97438 * 10 8 7 36 36 H 1.09010 * 110.48228 * 142.28511 * 11 10 8 37 37 H 1.08998 * 110.49010 * 264.93470 * 11 10 8 38 38 H 0.96995 * 119.99816 * 179.97438 * 17 16 14 39 39 H 1.08998 * 110.48293 * 335.77930 * 22 8 7 40 40 H 1.09001 * 110.49024 * 98.42662 * 22 8 7 41 41 H 0.96703 * 114.00419 * 89.99539 * 24 23 5 42 42 H 1.08001 * 120.02426 * 0.02686 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5803 1.2013 0.0057 5 6 4.2751 0.0071 0.0001 6 6 5.7822 0.0116 0.0005 7 7 6.2730 -0.2273 -1.3632 8 6 7.7415 -0.2304 -1.4012 9 1 8.1348 0.4920 -0.6860 10 6 8.2743 -1.6370 -1.0766 11 6 9.0719 -2.1021 -2.3125 12 6 9.4828 -0.7853 -3.0170 13 1 10.3559 -0.3454 -2.5349 14 6 9.7472 -1.0231 -4.4815 15 1 9.1500 -0.5188 -5.2268 16 6 10.7513 -1.8844 -4.8697 17 7 10.9817 -2.0923 -6.1478 18 14 11.7846 -2.7561 -3.5806 19 1 11.1489 -4.0515 -3.2297 20 1 13.1455 -3.0028 -4.1210 21 1 11.8807 -1.9069 -2.3662 22 6 8.2341 0.1103 -2.8229 23 6 3.5846 -1.1959 -0.0004 24 8 4.2658 -2.3717 -0.0012 25 6 2.1971 -1.1965 -0.0005 26 1 -0.3634 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3634 -0.8898 -0.5141 29 1 1.6565 2.1324 -0.0004 30 1 4.1175 2.1382 0.0102 31 1 6.1475 -0.7746 0.6611 32 1 6.1426 0.9783 0.3523 33 1 5.9001 -1.0875 -1.7363 34 1 8.9267 -1.5970 -0.2044 35 1 7.4432 -2.3173 -0.8905 36 1 9.9553 -2.6632 -2.0073 37 1 8.4432 -2.7051 -2.9676 38 1 11.6883 -2.6979 -6.4210 39 1 7.4701 -0.1355 -3.5604 40 1 8.5059 1.1637 -2.8904 41 1 4.4633 -2.7125 0.8820 42 1 1.6570 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877563884.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:48 Heat of formation + Delta-G solvation = -33.132647 kcal Electronic energy + Delta-G solvation = -20932.714523 eV Core-core repulsion = 17876.804015 eV Total energy + Delta-G solvation = -3055.910508 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.16233 -38.02690 -36.99797 -34.84476 -32.74844 -31.72246 -30.01940 -28.70139 -28.15391 -26.47157 -23.88136 -23.07708 -22.81497 -21.01093 -19.66737 -19.14412 -18.05721 -16.66365 -16.34812 -16.03749 -15.39415 -15.31126 -14.77186 -14.11465 -13.96136 -13.78869 -13.72409 -13.34136 -12.84445 -12.77086 -12.53746 -12.33685 -12.09854 -11.87167 -11.84953 -11.57202 -11.35407 -10.88344 -10.76873 -10.51852 -10.24496 -9.95518 -9.80265 -9.66997 -9.30631 -8.92385 -8.92008 -8.62739 -8.46986 -7.98076 -5.99873 -3.97616 1.08268 1.18010 3.33267 3.41666 3.43027 3.44128 4.02593 4.48359 4.55861 4.65748 4.69266 4.87915 4.99558 5.14398 5.27799 5.31516 5.32620 5.41576 5.49624 5.50109 5.59877 5.66066 5.66791 5.83140 5.92589 6.10653 6.17974 6.34433 6.35639 6.42843 6.45711 6.52923 6.63321 6.68488 6.77808 6.90263 6.98221 7.24790 7.44998 7.52297 7.68748 7.73902 7.86934 8.62659 9.05538 9.63752 11.13795 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034482 B = 0.003474 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.825277 B = 8058.495618 C = 8159.140901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.077 4.077 3 C -0.130 4.130 4 C -0.084 4.084 5 C -0.105 4.105 6 C 0.104 3.896 7 N -0.675 5.675 8 C 0.082 3.918 9 H 0.068 0.932 10 C -0.150 4.150 11 C -0.128 4.128 12 C 0.011 3.989 13 H 0.030 0.970 14 C -0.505 4.505 15 H 0.074 0.926 16 C 0.068 3.932 17 N -0.905 5.905 18 Si 0.884 3.116 19 H -0.280 1.280 20 H -0.297 1.297 21 H -0.266 1.266 22 C -0.091 4.091 23 C 0.113 3.887 24 O -0.494 6.494 25 C -0.147 4.147 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.034 0.966 32 H 0.075 0.925 33 H 0.347 0.653 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.042 0.958 37 H 0.066 0.934 38 H 0.262 0.738 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.386 0.614 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.171 3.569 17.727 25.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.077 4.077 3 C -0.148 4.148 4 C -0.102 4.102 5 C -0.106 4.106 6 C -0.025 4.025 7 N -0.306 5.306 8 C -0.028 4.028 9 H 0.086 0.914 10 C -0.190 4.190 11 C -0.165 4.165 12 C -0.008 4.008 13 H 0.048 0.952 14 C -0.543 4.543 15 H 0.092 0.908 16 C -0.133 4.133 17 N -0.544 5.544 18 Si 0.713 3.287 19 H -0.206 1.206 20 H -0.224 1.224 21 H -0.191 1.191 22 C -0.129 4.129 23 C 0.068 3.932 24 O -0.304 6.304 25 C -0.166 4.166 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.141 0.859 30 H 0.145 0.855 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.167 0.833 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.242 0.758 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -18.141 4.192 16.800 25.078 hybrid contribution 0.895 -1.640 1.537 2.419 sum -17.246 2.552 18.337 25.302 Atomic orbital electron populations 1.20789 0.91063 1.02935 1.02239 1.19762 0.96046 0.92691 0.99213 1.21038 0.94169 0.97521 1.02121 1.20956 0.93816 0.97430 0.98023 1.20222 0.96238 0.92587 1.01576 1.20727 0.89389 1.00858 0.91568 1.60781 1.08320 1.42817 1.18698 1.22365 0.85668 0.95419 0.99304 0.91394 1.22892 0.99713 0.97279 0.99074 1.22760 0.98079 1.00448 0.95260 1.20106 0.93357 0.90945 0.96419 0.95228 1.21036 1.17066 1.26106 0.90101 0.90827 1.25011 0.96841 0.96449 0.94956 1.69914 1.32326 1.37298 1.14821 0.86879 0.79229 0.80365 0.82192 1.20608 1.22404 1.19128 1.22256 0.98262 0.98897 0.93469 1.18334 0.89692 0.84954 1.00176 1.84873 1.76269 1.36060 1.33152 1.21247 0.93338 0.98303 1.03692 0.91210 0.91382 0.91515 0.85916 0.85475 0.94784 0.90671 0.83314 0.93109 0.92733 0.93966 0.91572 0.92819 0.91300 0.92955 0.75785 0.85665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 36.00 0.36 -0.42 16 2 C -0.08 -0.74 5.88 -104.65 -0.62 -1.35 16 3 C -0.13 -1.27 9.70 -39.56 -0.38 -1.65 16 4 C -0.08 -0.91 9.66 -39.61 -0.38 -1.29 16 5 C -0.11 -1.27 5.41 -104.47 -0.56 -1.83 16 6 C 0.10 1.31 5.30 -4.98 -0.03 1.29 16 7 N -0.67 -10.53 6.19 -106.80 -0.66 -11.19 16 8 C 0.08 1.40 3.23 -66.59 -0.21 1.19 16 9 H 0.07 1.09 7.83 -51.93 -0.41 0.68 16 10 C -0.15 -2.64 6.37 -25.61 -0.16 -2.81 16 11 C -0.13 -2.79 5.08 -25.07 -0.13 -2.91 16 12 C 0.01 0.26 2.30 -89.78 -0.21 0.05 16 13 H 0.03 0.72 7.37 -51.93 -0.38 0.34 16 14 C -0.51 -14.49 9.12 -34.44 -0.31 -14.80 16 15 H 0.07 2.29 8.03 -52.49 -0.42 1.87 16 16 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 17 N -0.90 -28.30 13.96 55.43 0.77 -27.53 16 18 Si 0.88 22.38 24.46 -169.99 -4.16 18.22 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 21 H -0.27 -6.45 6.48 56.52 0.37 -6.08 16 22 C -0.09 -1.87 5.95 -25.07 -0.15 -2.02 16 23 C 0.11 1.33 6.68 -39.22 -0.26 1.07 16 24 O -0.49 -5.53 12.69 -19.40 -0.25 -5.78 16 25 C -0.15 -1.55 9.64 -39.43 -0.38 -1.93 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 28 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 29 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 30 H 0.13 1.22 8.03 -52.48 -0.42 0.80 16 31 H 0.03 0.41 7.81 -51.93 -0.41 0.01 16 32 H 0.07 0.90 7.93 -51.93 -0.41 0.49 16 33 H 0.35 5.78 8.13 -39.29 -0.32 5.46 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.89 7.59 -51.93 -0.39 0.50 16 36 H 0.04 0.94 4.91 -51.92 -0.25 0.69 16 37 H 0.07 1.52 8.04 -51.93 -0.42 1.10 16 38 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 39 H 0.07 1.51 7.95 -51.93 -0.41 1.10 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.39 2.60 9.06 45.56 0.41 3.01 16 42 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 335.45 15.07 5.06 5.06 Total: -1.00 -32.14 335.45 -8.72 -40.86 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -5.96 Total: 5.88 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: -3.53 Total: -25.51 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.11 Total: -38.72 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.25 Total: -5.78 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.16 Total: 18.22 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.14 -8.72 -40.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877563884.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.724 kcal (2) G-P(sol) polarization free energy of solvation -32.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds