Wall clock time and date at job start Mon Mar 30 2020 01:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38285 * 119.97260 * 2 1 4 4 C 1.38245 * 120.11334 * 179.72620 * 3 2 1 5 5 C 1.38166 * 120.05156 * 0.54324 * 4 3 2 6 6 C 1.50708 * 120.02517 * 179.74514 * 5 4 3 7 7 N 1.46895 * 109.47207 * 259.72851 * 6 5 4 8 8 C 1.46906 * 110.99647 * 180.02562 * 7 6 5 9 9 H 1.09000 * 110.01685 * 325.06263 * 8 7 6 10 10 C 1.53873 * 110.03251 * 86.45479 * 8 7 6 11 11 C 1.54265 * 106.59723 * 119.28193 * 10 8 7 12 12 C 1.54893 * 104.19597 * 23.61063 * 11 10 8 13 13 H 1.09005 * 110.75370 * 80.55760 * 12 11 10 14 14 C 1.50703 * 110.75769 * 203.73881 * 12 11 10 15 15 H 1.07995 * 119.99758 * 118.54464 * 14 12 11 16 16 C 1.37873 * 119.99707 * 298.54894 * 14 12 11 17 17 N 1.31522 * 119.99597 * 179.97438 * 16 14 12 18 18 Si 1.86799 * 120.00559 * 359.97438 * 16 14 12 19 19 H 1.48503 * 109.47293 * 89.99718 * 18 16 14 20 20 H 1.48495 * 109.47315 * 210.00291 * 18 16 14 21 21 H 1.48498 * 109.46870 * 329.99943 * 18 16 14 22 22 C 1.54270 * 110.03070 * 203.62373 * 8 7 6 23 23 C 1.38710 * 119.94859 * 359.48101 * 5 4 3 24 24 O 1.35891 * 120.05810 * 180.22947 * 23 5 4 25 25 C 1.38127 * 119.97357 * 180.02562 * 2 1 3 26 26 H 1.09001 * 109.47288 * 269.97941 * 1 2 3 27 27 H 1.09000 * 109.47134 * 29.97733 * 1 2 3 28 28 H 1.09001 * 109.47284 * 149.98039 * 1 2 3 29 29 H 1.08001 * 119.94410 * 359.97438 * 3 2 1 30 30 H 1.08003 * 119.97406 * 180.27699 * 4 3 2 31 31 H 1.08995 * 109.46484 * 139.72592 * 6 5 4 32 32 H 1.08999 * 109.47033 * 19.73237 * 6 5 4 33 33 H 1.00897 * 111.00420 * 303.95683 * 7 6 5 34 34 H 1.08996 * 110.02961 * 238.56824 * 10 8 7 35 35 H 1.09003 * 110.03167 * 359.97438 * 10 8 7 36 36 H 1.09010 * 110.48228 * 142.28511 * 11 10 8 37 37 H 1.08998 * 110.49010 * 264.93470 * 11 10 8 38 38 H 0.96995 * 119.99816 * 179.97438 * 17 16 14 39 39 H 1.08998 * 110.48293 * 335.77930 * 22 8 7 40 40 H 1.09001 * 110.49024 * 98.42662 * 22 8 7 41 41 H 0.96703 * 114.00419 * 89.99539 * 24 23 5 42 42 H 1.08001 * 120.02426 * 0.02686 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5803 1.2013 0.0057 5 6 4.2751 0.0071 0.0001 6 6 5.7822 0.0116 0.0005 7 7 6.2730 -0.2273 -1.3632 8 6 7.7415 -0.2304 -1.4012 9 1 8.1348 0.4920 -0.6860 10 6 8.2743 -1.6370 -1.0766 11 6 9.0719 -2.1021 -2.3125 12 6 9.4828 -0.7853 -3.0170 13 1 10.3559 -0.3454 -2.5349 14 6 9.7472 -1.0231 -4.4815 15 1 9.1500 -0.5188 -5.2268 16 6 10.7513 -1.8844 -4.8697 17 7 10.9817 -2.0923 -6.1478 18 14 11.7846 -2.7561 -3.5806 19 1 11.1489 -4.0515 -3.2297 20 1 13.1455 -3.0028 -4.1210 21 1 11.8807 -1.9069 -2.3662 22 6 8.2341 0.1103 -2.8229 23 6 3.5846 -1.1959 -0.0004 24 8 4.2658 -2.3717 -0.0012 25 6 2.1971 -1.1965 -0.0005 26 1 -0.3634 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3634 -0.8898 -0.5141 29 1 1.6565 2.1324 -0.0004 30 1 4.1175 2.1382 0.0102 31 1 6.1475 -0.7746 0.6611 32 1 6.1426 0.9783 0.3523 33 1 5.9001 -1.0875 -1.7363 34 1 8.9267 -1.5970 -0.2044 35 1 7.4432 -2.3173 -0.8905 36 1 9.9553 -2.6632 -2.0073 37 1 8.4432 -2.7051 -2.9676 38 1 11.6883 -2.6979 -6.4210 39 1 7.4701 -0.1355 -3.5604 40 1 8.5059 1.1637 -2.8904 41 1 4.4633 -2.7125 0.8820 42 1 1.6570 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877563884.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:48 Heat of formation + Delta-G solvation = -55.488034 kcal Electronic energy + Delta-G solvation = -20933.683925 eV Core-core repulsion = 17876.804015 eV Total energy + Delta-G solvation = -3056.879910 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.96753 -39.51090 -37.76630 -36.14471 -34.44989 -33.08480 -30.79458 -30.14982 -29.57719 -27.76511 -25.33457 -24.42047 -23.60862 -21.83288 -21.25289 -20.87252 -18.85580 -18.72903 -17.35770 -16.91855 -16.68868 -16.54274 -16.12545 -15.35009 -15.31060 -14.81096 -14.75436 -14.49356 -14.36186 -14.08958 -13.79206 -13.40756 -13.35270 -12.97245 -12.76681 -12.71237 -12.55162 -12.44064 -12.22098 -11.95832 -11.66537 -11.52128 -11.45958 -11.29727 -11.11993 -11.03140 -10.69263 -9.70298 -9.45921 -9.13662 -8.28322 -6.31230 0.30954 0.40609 1.31849 1.35281 1.46443 2.34659 2.65822 3.07024 3.27282 3.47815 3.82489 3.89726 3.95934 3.99524 4.11446 4.15948 4.29426 4.46864 4.57038 4.63708 4.71090 4.72934 4.80865 4.84987 4.88008 4.94997 4.98044 4.99560 5.05647 5.11851 5.17078 5.27527 5.33854 5.42149 5.50950 5.61541 5.66181 5.66619 5.80947 5.98130 6.25409 6.34396 6.48338 6.75672 6.85390 7.33895 8.89203 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034482 B = 0.003474 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.825277 B = 8058.495618 C = 8159.140901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.078 4.078 3 C -0.137 4.137 4 C -0.092 4.092 5 C -0.126 4.126 6 C 0.108 3.892 7 N -0.682 5.682 8 C 0.095 3.905 9 H 0.090 0.910 10 C -0.138 4.138 11 C -0.127 4.127 12 C 0.005 3.995 13 H 0.032 0.968 14 C -0.513 4.513 15 H 0.027 0.973 16 C 0.007 3.993 17 N -0.955 5.955 18 Si 0.950 3.050 19 H -0.268 1.268 20 H -0.296 1.296 21 H -0.243 1.243 22 C -0.088 4.088 23 C 0.104 3.896 24 O -0.508 6.508 25 C -0.161 4.161 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.144 0.856 30 H 0.136 0.864 31 H 0.043 0.957 32 H 0.084 0.916 33 H 0.340 0.660 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.044 0.956 38 H 0.264 0.736 39 H 0.044 0.956 40 H 0.055 0.945 41 H 0.404 0.596 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.039 3.634 20.945 28.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.079 4.079 3 C -0.155 4.155 4 C -0.111 4.111 5 C -0.126 4.126 6 C -0.021 4.021 7 N -0.313 5.313 8 C -0.015 4.015 9 H 0.108 0.892 10 C -0.177 4.177 11 C -0.165 4.165 12 C -0.014 4.014 13 H 0.051 0.949 14 C -0.551 4.551 15 H 0.046 0.954 16 C -0.189 4.189 17 N -0.596 5.596 18 Si 0.776 3.224 19 H -0.194 1.194 20 H -0.224 1.224 21 H -0.166 1.166 22 C -0.126 4.126 23 C 0.059 3.941 24 O -0.321 6.321 25 C -0.180 4.180 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.162 0.838 30 H 0.154 0.846 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.159 0.841 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.262 0.738 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.031 4.270 20.053 27.974 hybrid contribution 1.053 -1.599 0.438 1.964 sum -17.979 2.671 20.491 27.390 Atomic orbital electron populations 1.20847 0.89109 1.03628 1.03340 1.20135 0.97574 0.92345 0.97816 1.21336 0.93970 0.98578 1.01608 1.21179 0.94550 0.97512 0.97825 1.20244 0.95914 0.93190 1.03299 1.20740 0.89963 1.01558 0.89796 1.60691 1.07192 1.42420 1.20977 1.22155 0.86796 0.95719 0.96851 0.89234 1.22816 0.99940 0.97426 0.97562 1.22621 0.98406 0.98751 0.96711 1.20080 0.94879 0.93221 0.93247 0.94947 1.21361 1.16243 1.25302 0.92215 0.95426 1.25935 0.98362 0.97420 0.97155 1.70075 1.33536 1.38681 1.17325 0.85806 0.77030 0.79650 0.79936 1.19386 1.22383 1.16632 1.22149 0.96368 0.98405 0.95685 1.18500 0.90241 0.85017 1.00329 1.84819 1.76335 1.36023 1.34903 1.21461 0.93178 0.99239 1.04085 0.89798 0.90403 0.91148 0.83791 0.84573 0.93853 0.89757 0.84141 0.90723 0.91328 0.93928 0.93669 0.92676 0.93699 0.92670 0.73794 0.84755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 71.24 0.71 -0.55 16 2 C -0.08 -1.35 5.88 -19.88 -0.12 -1.47 16 3 C -0.14 -2.38 9.70 22.28 0.22 -2.16 16 4 C -0.09 -1.84 9.66 22.25 0.22 -1.62 16 5 C -0.13 -2.81 5.41 -19.77 -0.11 -2.92 16 6 C 0.11 2.47 5.30 85.56 0.45 2.93 16 7 N -0.68 -20.10 6.19 -491.82 -3.04 -23.15 16 8 C 0.09 3.01 3.23 45.64 0.15 3.16 16 9 H 0.09 2.53 7.83 -2.39 -0.02 2.51 16 10 C -0.14 -4.43 6.37 31.32 0.20 -4.23 16 11 C -0.13 -5.35 5.08 31.67 0.16 -5.19 16 12 C 0.00 0.23 2.30 -10.25 -0.02 0.21 16 13 H 0.03 1.53 7.37 -2.38 -0.02 1.51 16 14 C -0.51 -30.47 9.12 25.60 0.23 -30.24 16 15 H 0.03 1.83 8.03 -2.91 -0.02 1.80 16 16 C 0.01 0.45 5.46 84.65 0.46 0.91 16 17 N -0.96 -61.85 13.96 21.45 0.30 -61.55 16 18 Si 0.95 46.00 24.46 68.60 1.68 47.68 16 19 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 20 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 21 H -0.24 -10.75 6.48 99.48 0.64 -10.10 16 22 C -0.09 -3.60 5.95 31.67 0.19 -3.41 16 23 C 0.10 2.29 6.68 22.51 0.15 2.44 16 24 O -0.51 -10.64 12.69 -92.32 -1.17 -11.81 16 25 C -0.16 -3.16 9.64 22.37 0.22 -2.95 16 26 H 0.08 0.72 8.14 -2.39 -0.02 0.71 16 27 H 0.08 0.73 8.08 -2.39 -0.02 0.71 16 28 H 0.07 0.75 8.08 -2.39 -0.02 0.73 16 29 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 30 H 0.14 2.35 8.03 -2.91 -0.02 2.33 16 31 H 0.04 0.92 7.81 -2.39 -0.02 0.90 16 32 H 0.08 1.77 7.93 -2.39 -0.02 1.75 16 33 H 0.34 10.92 8.13 -89.70 -0.73 10.20 16 34 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.07 2.03 7.59 -2.39 -0.02 2.01 16 36 H 0.04 1.77 4.91 -2.38 -0.01 1.76 16 37 H 0.04 2.06 8.04 -2.39 -0.02 2.04 16 38 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 39 H 0.04 2.02 7.95 -2.39 -0.02 2.00 16 40 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.40 4.72 9.06 -74.05 -0.67 4.05 16 42 H 0.13 2.27 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -71.26 335.45 0.42 -70.83 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: -0.44 Total: 23.08 kcal Atomic # 6 Polarization: -48.19 SS G_CDS: 3.11 Total: -45.09 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -2.75 Total: -84.70 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: -1.17 Total: -11.81 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.68 Total: 47.68 kcal Total: -71.26 0.42 -70.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877563884.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.346 kcal (2) G-P(sol) polarization free energy of solvation -71.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds