Wall clock time and date at job start Mon Mar 30 2020 01:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38288 * 119.97303 * 2 1 4 4 C 1.38240 * 120.11307 * 179.72352 * 3 2 1 5 5 C 1.38169 * 120.05333 * 0.55656 * 4 3 2 6 6 C 1.50697 * 120.02880 * 179.74434 * 5 4 3 7 7 N 1.46902 * 109.47604 * 259.72266 * 6 5 4 8 8 C 1.46846 * 110.99617 * 294.20982 * 7 6 5 9 9 C 1.53040 * 109.51964 * 174.15808 * 8 7 6 10 10 C 1.53119 * 109.28089 * 59.17912 * 9 8 7 11 11 C 1.53124 * 109.15841 * 302.34776 * 10 9 8 12 12 H 1.09000 * 109.53108 * 297.68809 * 11 10 9 13 13 C 1.50693 * 109.50241 * 177.59421 * 11 10 9 14 14 H 1.07996 * 120.00476 * 240.19349 * 13 11 10 15 15 C 1.37879 * 119.99955 * 60.19409 * 13 11 10 16 16 N 1.31513 * 120.00126 * 359.97438 * 15 13 11 17 17 Si 1.86809 * 120.00078 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.46820 * 59.99762 * 17 15 13 19 19 H 1.48497 * 109.47128 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46796 * 299.99682 * 17 15 13 21 21 C 1.46846 * 111.00204 * 169.99877 * 7 6 5 22 22 C 1.38708 * 119.94221 * 359.46885 * 5 4 3 23 23 O 1.35904 * 120.05345 * 180.23692 * 22 5 4 24 24 C 1.38124 * 119.97258 * 180.02562 * 2 1 3 25 25 H 1.09002 * 109.47199 * 269.97550 * 1 2 3 26 26 H 1.09003 * 109.47145 * 29.97646 * 1 2 3 27 27 H 1.09003 * 109.47320 * 149.97401 * 1 2 3 28 28 H 1.08000 * 119.93865 * 0.02562 * 3 2 1 29 29 H 1.07995 * 119.97652 * 180.27420 * 4 3 2 30 30 H 1.08997 * 109.47156 * 139.71795 * 6 5 4 31 31 H 1.09007 * 109.47324 * 19.72559 * 6 5 4 32 32 H 1.08996 * 109.46231 * 294.17554 * 8 7 6 33 33 H 1.09004 * 109.46418 * 54.14394 * 8 7 6 34 34 H 1.09004 * 109.50602 * 299.23671 * 9 8 7 35 35 H 1.08998 * 109.50366 * 179.12192 * 9 8 7 36 36 H 1.08998 * 109.52394 * 182.44064 * 10 9 8 37 37 H 1.08999 * 109.51878 * 62.24548 * 10 9 8 38 38 H 0.97003 * 119.99788 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.45990 * 305.85570 * 21 7 6 40 40 H 1.08997 * 109.46419 * 65.82250 * 21 7 6 41 41 H 0.96700 * 114.00177 * 89.99877 * 23 22 5 42 42 H 1.08005 * 120.02488 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5802 1.2013 0.0058 5 6 4.2752 0.0071 -0.0001 6 6 5.7821 0.0115 0.0004 7 7 6.2730 -0.2273 -1.3634 8 6 5.9225 -1.5783 -1.8198 9 6 6.3191 -1.7407 -3.2890 10 6 7.8254 -1.5073 -3.4348 11 6 8.1710 -0.1118 -2.9076 12 1 7.6595 0.6412 -3.5071 13 6 9.6600 0.1037 -2.9928 14 1 10.2290 0.3029 -2.0968 15 6 10.2960 0.0464 -4.2148 16 7 9.6033 -0.1968 -5.3060 17 14 12.1420 0.3127 -4.3204 18 1 12.8378 -0.7151 -3.5052 19 1 12.5781 0.2015 -5.7356 20 1 12.4774 1.6642 -3.8045 21 6 7.7207 0.0034 -1.4496 22 6 3.5845 -1.1958 -0.0006 23 8 4.2658 -2.3718 -0.0014 24 6 2.1970 -1.1965 -0.0005 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6564 2.1324 0.0004 29 1 4.1175 2.1381 0.0102 30 1 6.1475 -0.7748 0.6610 31 1 6.1426 0.9782 0.3523 32 1 6.4536 -2.3146 -1.2166 33 1 4.8481 -1.7298 -1.7148 34 1 5.7779 -1.0138 -3.8946 35 1 6.0731 -2.7486 -3.6230 36 1 8.1051 -1.5793 -4.4858 37 1 8.3676 -2.2582 -2.8602 38 1 10.0509 -0.2374 -6.1656 39 1 7.9524 1.0007 -1.0756 40 1 8.2434 -0.7403 -0.8482 41 1 4.4632 -2.7126 0.8817 42 1 1.6570 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877622099.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:42 Heat of formation + Delta-G solvation = -25.331135 kcal Electronic energy + Delta-G solvation = -21592.793993 eV Core-core repulsion = 18537.221784 eV Total energy + Delta-G solvation = -3055.572209 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.16915 -37.83194 -36.82014 -34.19349 -32.65269 -31.24458 -29.89872 -29.68295 -27.89113 -24.89013 -24.52949 -22.69318 -21.90332 -21.34277 -20.44121 -18.48182 -17.93151 -16.42925 -16.00910 -15.82494 -15.41484 -14.66931 -14.32293 -13.91648 -13.84219 -13.64341 -13.43360 -13.07851 -12.73609 -12.49894 -12.42903 -12.16144 -11.77861 -11.67942 -11.54562 -11.30093 -11.09848 -10.88338 -10.67268 -10.52450 -10.32255 -9.91602 -9.69457 -9.37813 -8.98498 -8.72055 -8.61938 -8.41475 -8.23118 -7.51092 -5.91412 -3.97797 1.26324 1.35710 3.35449 3.40046 3.42261 3.59345 4.20109 4.46814 4.75800 4.82941 4.83491 5.02809 5.15647 5.29273 5.38239 5.42776 5.52364 5.63433 5.72996 5.79984 5.93728 6.03051 6.09404 6.10149 6.26166 6.39208 6.47707 6.49271 6.55324 6.64466 6.69166 6.85511 6.87168 6.94570 7.07120 7.33446 7.50567 7.69387 7.80198 7.82453 7.94173 8.16578 8.25697 8.55101 9.06266 9.65946 11.14403 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036141 B = 0.003913 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.556373 B = 7154.238053 C = 7315.688562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.081 4.081 3 C -0.131 4.131 4 C -0.085 4.085 5 C -0.095 4.095 6 C 0.097 3.903 7 N -0.532 5.532 8 C 0.067 3.933 9 C -0.119 4.119 10 C -0.109 4.109 11 C 0.056 3.944 12 H 0.033 0.967 13 C -0.515 4.515 14 H 0.052 0.948 15 C 0.063 3.937 16 N -0.888 5.888 17 Si 0.890 3.110 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.278 1.278 21 C 0.068 3.932 22 C 0.114 3.886 23 O -0.487 6.487 24 C -0.149 4.149 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.121 0.879 29 H 0.127 0.873 30 H 0.033 0.967 31 H 0.076 0.924 32 H 0.021 0.979 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.043 0.957 36 H 0.088 0.912 37 H 0.028 0.972 38 H 0.260 0.740 39 H 0.057 0.943 40 H 0.017 0.983 41 H 0.378 0.622 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.856 -1.074 12.467 20.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.081 4.081 3 C -0.149 4.149 4 C -0.104 4.104 5 C -0.096 4.096 6 C -0.030 4.030 7 N -0.257 5.257 8 C -0.061 4.061 9 C -0.157 4.157 10 C -0.147 4.147 11 C 0.037 3.963 12 H 0.051 0.949 13 C -0.554 4.554 14 H 0.070 0.930 15 C -0.138 4.138 16 N -0.527 5.527 17 Si 0.718 3.282 18 H -0.204 1.204 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.058 4.058 22 C 0.069 3.931 23 O -0.298 6.298 24 C -0.167 4.167 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.139 0.861 29 H 0.145 0.855 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.040 0.960 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.107 0.893 37 H 0.047 0.953 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.036 0.964 41 H 0.234 0.766 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.070 -0.709 11.341 19.682 hybrid contribution 1.519 -0.578 0.896 1.856 sum -14.551 -1.287 12.237 19.057 Atomic orbital electron populations 1.20769 0.91222 1.02786 1.02085 1.19721 0.95900 0.92741 0.99744 1.21006 0.94157 0.97420 1.02282 1.20955 0.93777 0.97500 0.98153 1.20234 0.96375 0.92524 1.00488 1.20873 0.89706 1.00849 0.91606 1.62058 1.16117 1.27955 1.19554 1.22203 1.00258 0.87669 0.95924 1.21704 0.99699 0.99238 0.95025 1.21639 0.90857 0.98349 1.03890 1.18645 0.94866 0.93878 0.88893 0.94853 1.21121 0.92760 1.48486 0.93012 0.92955 1.24938 0.97878 0.95214 0.95816 1.69894 1.35276 1.49318 0.98185 0.86696 0.85960 0.78662 0.76860 1.20416 1.21342 1.20337 1.22314 0.83868 0.98650 1.01012 1.18239 0.89542 0.85185 1.00101 1.85104 1.76032 1.36226 1.32404 1.21213 0.93314 0.98164 1.04030 0.91351 0.91495 0.91643 0.86064 0.85539 0.94848 0.90575 0.96050 0.90372 0.92526 0.93814 0.89326 0.95311 0.93051 0.92494 0.96449 0.76586 0.85834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.01 36.01 0.36 -0.53 16 2 C -0.08 -0.89 5.88 -104.65 -0.62 -1.51 16 3 C -0.13 -1.49 9.70 -39.56 -0.38 -1.87 16 4 C -0.09 -1.10 9.67 -39.61 -0.38 -1.49 16 5 C -0.10 -1.36 5.17 -104.47 -0.54 -1.90 16 6 C 0.10 1.54 4.99 -4.98 -0.02 1.52 16 7 N -0.53 -10.46 4.65 -236.12 -1.10 -11.56 16 8 C 0.07 1.30 4.05 -3.83 -0.02 1.29 16 9 C -0.12 -2.56 6.09 -26.65 -0.16 -2.72 16 10 C -0.11 -2.73 5.03 -26.61 -0.13 -2.86 16 11 C 0.06 1.45 2.26 -91.69 -0.21 1.25 16 12 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 13 C -0.51 -14.46 8.56 -34.44 -0.29 -14.76 16 14 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 15 C 0.06 1.77 5.31 -17.82 -0.09 1.68 16 16 N -0.89 -25.94 11.36 55.43 0.63 -25.31 16 17 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C 0.07 1.51 4.68 -3.84 -0.02 1.49 16 22 C 0.11 1.53 5.42 -39.22 -0.21 1.32 16 23 O -0.49 -6.23 9.64 -19.44 -0.19 -6.41 16 24 C -0.15 -1.77 9.64 -39.43 -0.38 -2.15 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 27 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 28 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.13 1.49 8.03 -52.49 -0.42 1.07 16 30 H 0.03 0.51 7.84 -51.93 -0.41 0.10 16 31 H 0.08 1.13 7.85 -51.93 -0.41 0.72 16 32 H 0.02 0.42 7.98 -51.93 -0.41 0.01 16 33 H 0.08 1.47 4.44 -51.93 -0.23 1.24 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 2.45 6.16 -51.93 -0.32 2.13 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.06 1.22 8.02 -51.93 -0.42 0.81 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.38 3.13 9.06 45.56 0.41 3.54 16 42 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 329.54 15.07 4.97 4.97 Total: -1.00 -30.92 329.54 -9.78 -40.70 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -5.97 Total: 2.28 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -3.11 Total: -21.25 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: -0.47 Total: -36.87 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.19 Total: -6.41 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.92 -9.78 -40.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877622099.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.368 kcal (2) G-P(sol) polarization free energy of solvation -30.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds