Wall clock time and date at job start Mon Mar 30 2020 01:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38288 * 119.97303 * 2 1 4 4 C 1.38240 * 120.11307 * 179.72352 * 3 2 1 5 5 C 1.38169 * 120.05333 * 0.55656 * 4 3 2 6 6 C 1.50697 * 120.02880 * 179.74434 * 5 4 3 7 7 N 1.46902 * 109.47604 * 259.72266 * 6 5 4 8 8 C 1.46846 * 110.99617 * 294.20982 * 7 6 5 9 9 C 1.53040 * 109.51964 * 174.15808 * 8 7 6 10 10 C 1.53119 * 109.28089 * 59.17912 * 9 8 7 11 11 C 1.53124 * 109.15841 * 302.34776 * 10 9 8 12 12 H 1.09000 * 109.53108 * 297.68809 * 11 10 9 13 13 C 1.50693 * 109.50241 * 177.59421 * 11 10 9 14 14 H 1.07996 * 120.00476 * 240.19349 * 13 11 10 15 15 C 1.37879 * 119.99955 * 60.19409 * 13 11 10 16 16 N 1.31513 * 120.00126 * 359.97438 * 15 13 11 17 17 Si 1.86809 * 120.00078 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.46820 * 59.99762 * 17 15 13 19 19 H 1.48497 * 109.47128 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46796 * 299.99682 * 17 15 13 21 21 C 1.46846 * 111.00204 * 169.99877 * 7 6 5 22 22 C 1.38708 * 119.94221 * 359.46885 * 5 4 3 23 23 O 1.35904 * 120.05345 * 180.23692 * 22 5 4 24 24 C 1.38124 * 119.97258 * 180.02562 * 2 1 3 25 25 H 1.09002 * 109.47199 * 269.97550 * 1 2 3 26 26 H 1.09003 * 109.47145 * 29.97646 * 1 2 3 27 27 H 1.09003 * 109.47320 * 149.97401 * 1 2 3 28 28 H 1.08000 * 119.93865 * 0.02562 * 3 2 1 29 29 H 1.07995 * 119.97652 * 180.27420 * 4 3 2 30 30 H 1.08997 * 109.47156 * 139.71795 * 6 5 4 31 31 H 1.09007 * 109.47324 * 19.72559 * 6 5 4 32 32 H 1.08996 * 109.46231 * 294.17554 * 8 7 6 33 33 H 1.09004 * 109.46418 * 54.14394 * 8 7 6 34 34 H 1.09004 * 109.50602 * 299.23671 * 9 8 7 35 35 H 1.08998 * 109.50366 * 179.12192 * 9 8 7 36 36 H 1.08998 * 109.52394 * 182.44064 * 10 9 8 37 37 H 1.08999 * 109.51878 * 62.24548 * 10 9 8 38 38 H 0.97003 * 119.99788 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.45990 * 305.85570 * 21 7 6 40 40 H 1.08997 * 109.46419 * 65.82250 * 21 7 6 41 41 H 0.96700 * 114.00177 * 89.99877 * 23 22 5 42 42 H 1.08005 * 120.02488 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5802 1.2013 0.0058 5 6 4.2752 0.0071 -0.0001 6 6 5.7821 0.0115 0.0004 7 7 6.2730 -0.2273 -1.3634 8 6 5.9225 -1.5783 -1.8198 9 6 6.3191 -1.7407 -3.2890 10 6 7.8254 -1.5073 -3.4348 11 6 8.1710 -0.1118 -2.9076 12 1 7.6595 0.6412 -3.5071 13 6 9.6600 0.1037 -2.9928 14 1 10.2290 0.3029 -2.0968 15 6 10.2960 0.0464 -4.2148 16 7 9.6033 -0.1968 -5.3060 17 14 12.1420 0.3127 -4.3204 18 1 12.8378 -0.7151 -3.5052 19 1 12.5781 0.2015 -5.7356 20 1 12.4774 1.6642 -3.8045 21 6 7.7207 0.0034 -1.4496 22 6 3.5845 -1.1958 -0.0006 23 8 4.2658 -2.3718 -0.0014 24 6 2.1970 -1.1965 -0.0005 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6564 2.1324 0.0004 29 1 4.1175 2.1381 0.0102 30 1 6.1475 -0.7748 0.6610 31 1 6.1426 0.9782 0.3523 32 1 6.4536 -2.3146 -1.2166 33 1 4.8481 -1.7298 -1.7148 34 1 5.7779 -1.0138 -3.8946 35 1 6.0731 -2.7486 -3.6230 36 1 8.1051 -1.5793 -4.4858 37 1 8.3676 -2.2582 -2.8602 38 1 10.0509 -0.2374 -6.1656 39 1 7.9524 1.0007 -1.0756 40 1 8.2434 -0.7403 -0.8482 41 1 4.4632 -2.7126 0.8817 42 1 1.6570 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877622099.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:42 Heat of formation + Delta-G solvation = -44.687048 kcal Electronic energy + Delta-G solvation = -21593.633329 eV Core-core repulsion = 18537.221784 eV Total energy + Delta-G solvation = -3056.411544 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.20145 -39.41193 -37.75612 -35.82741 -34.22474 -32.70970 -31.64642 -30.73838 -28.98951 -26.90570 -25.77839 -23.74821 -23.43274 -22.94835 -21.59970 -20.34946 -18.87460 -18.44097 -17.17794 -16.97364 -16.55312 -16.45449 -15.71998 -15.48375 -14.95086 -14.84024 -14.72335 -14.37902 -14.32708 -14.04310 -13.58590 -13.46003 -13.25902 -12.96097 -12.81659 -12.58607 -12.48102 -12.46731 -12.39478 -12.17464 -11.75642 -11.73006 -11.38999 -11.21563 -10.84433 -10.66757 -10.36718 -9.66573 -9.40438 -9.02961 -8.07213 -6.22262 0.33443 0.43688 1.41507 1.43467 1.51056 2.42909 2.65290 3.19198 3.30698 3.34435 3.83153 3.93601 4.11393 4.22774 4.29316 4.34767 4.41090 4.48516 4.57998 4.60910 4.70566 4.80657 4.82970 4.88131 4.95151 4.98112 5.00490 5.09419 5.15819 5.27216 5.29843 5.38383 5.44974 5.52316 5.63279 5.64472 5.69013 5.96398 6.01674 6.12288 6.22091 6.37208 6.47115 6.88969 6.90402 7.45560 8.97404 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036141 B = 0.003913 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.556373 B = 7154.238053 C = 7315.688562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.078 4.078 3 C -0.136 4.136 4 C -0.095 4.095 5 C -0.121 4.121 6 C 0.101 3.899 7 N -0.544 5.544 8 C 0.079 3.921 9 C -0.114 4.114 10 C -0.101 4.101 11 C 0.054 3.946 12 H -0.006 1.006 13 C -0.538 4.538 14 H 0.053 0.947 15 C 0.012 3.988 16 N -0.917 5.917 17 Si 0.957 3.043 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.270 1.270 21 C 0.082 3.918 22 C 0.107 3.893 23 O -0.501 6.501 24 C -0.157 4.157 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.144 0.856 29 H 0.131 0.869 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.022 0.978 33 H 0.092 0.908 34 H 0.042 0.958 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.022 0.978 38 H 0.260 0.740 39 H 0.059 0.941 40 H 0.015 0.985 41 H 0.398 0.602 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.074 -1.160 13.825 22.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.079 4.079 3 C -0.154 4.154 4 C -0.114 4.114 5 C -0.122 4.122 6 C -0.026 4.026 7 N -0.268 5.268 8 C -0.048 4.048 9 C -0.152 4.152 10 C -0.139 4.139 11 C 0.035 3.965 12 H 0.012 0.988 13 C -0.576 4.576 14 H 0.072 0.928 15 C -0.186 4.186 16 N -0.556 5.556 17 Si 0.782 3.218 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.195 1.195 21 C -0.045 4.045 22 C 0.063 3.937 23 O -0.314 6.314 24 C -0.176 4.176 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.162 0.838 29 H 0.149 0.851 30 H 0.059 0.941 31 H 0.100 0.900 32 H 0.040 0.960 33 H 0.110 0.890 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.040 0.960 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.033 0.967 41 H 0.256 0.744 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -17.299 -0.799 12.730 21.494 hybrid contribution 1.808 -0.545 0.493 1.952 sum -15.491 -1.344 13.223 20.412 Atomic orbital electron populations 1.20837 0.88907 1.03650 1.03355 1.20138 0.97635 0.92250 0.97837 1.21303 0.93646 0.98735 1.01673 1.21138 0.94749 0.97316 0.98149 1.20172 0.95272 0.93620 1.03112 1.20871 0.91113 1.01336 0.89282 1.61978 1.14196 1.28072 1.22583 1.22079 1.00966 0.87687 0.94068 1.21641 0.96859 0.99893 0.96774 1.21443 0.93296 0.97602 1.01542 1.18566 0.93828 0.93151 0.90938 0.98769 1.21497 0.94050 1.48762 0.93318 0.92841 1.25769 1.02610 0.94831 0.95425 1.70049 1.37088 1.49851 0.98603 0.85631 0.80232 0.78906 0.76986 1.19618 1.20944 1.19505 1.21990 0.85736 0.98718 0.98074 1.18375 0.90229 0.84964 1.00152 1.84993 1.76137 1.36036 1.34285 1.21444 0.92837 0.99314 1.03955 0.89754 0.90492 0.90978 0.83783 0.85110 0.94099 0.90006 0.95981 0.89005 0.93900 0.91941 0.92489 0.95954 0.93066 0.92270 0.96694 0.74374 0.84326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 10.01 71.24 0.71 -0.69 16 2 C -0.08 -1.52 5.88 -19.88 -0.12 -1.64 16 3 C -0.14 -2.78 9.70 22.28 0.22 -2.56 16 4 C -0.09 -2.33 9.67 22.25 0.22 -2.11 16 5 C -0.12 -3.32 5.17 -19.77 -0.10 -3.42 16 6 C 0.10 3.11 4.99 85.56 0.43 3.54 16 7 N -0.54 -21.27 4.65 -900.93 -4.19 -25.45 16 8 C 0.08 3.04 4.05 86.33 0.35 3.39 16 9 C -0.11 -4.94 6.09 30.65 0.19 -4.75 16 10 C -0.10 -5.17 5.03 30.68 0.15 -5.02 16 11 C 0.05 2.90 2.26 -11.49 -0.03 2.87 16 12 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 13 C -0.54 -30.84 8.56 25.60 0.22 -30.62 16 14 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 15 C 0.01 0.70 5.31 84.66 0.45 1.15 16 16 N -0.92 -54.99 11.36 21.45 0.24 -54.75 16 17 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 C 0.08 3.68 4.68 86.32 0.40 4.08 16 22 C 0.11 2.71 5.42 22.50 0.12 2.83 16 23 O -0.50 -11.93 9.64 -92.47 -0.89 -12.82 16 24 C -0.16 -3.39 9.64 22.36 0.22 -3.17 16 25 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.08 0.84 8.09 -2.39 -0.02 0.82 16 27 H 0.07 0.84 8.08 -2.39 -0.02 0.82 16 28 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 29 H 0.13 2.96 8.03 -2.91 -0.02 2.94 16 30 H 0.04 1.19 7.84 -2.39 -0.02 1.17 16 31 H 0.08 2.38 7.85 -2.38 -0.02 2.36 16 32 H 0.02 0.85 7.98 -2.39 -0.02 0.83 16 33 H 0.09 3.35 4.44 -2.38 -0.01 3.34 16 34 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.06 3.27 6.16 -2.39 -0.01 3.26 16 37 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 39 H 0.06 2.57 8.02 -2.39 -0.02 2.55 16 40 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.40 5.85 9.06 -74.06 -0.67 5.18 16 42 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -67.21 329.54 0.95 -66.26 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 0.33 Total: 16.18 kcal Atomic # 6 Polarization: -39.53 SS G_CDS: 3.43 Total: -36.11 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -3.94 Total: -80.20 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -0.89 Total: -12.82 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -67.21 0.95 -66.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877622099.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.570 kcal (2) G-P(sol) polarization free energy of solvation -67.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds