Wall clock time and date at job start Mon Mar 30 2020 02:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47362 * 2 1 4 4 C 1.53001 * 109.47025 * 239.99873 * 2 1 3 5 5 C 1.50700 * 109.47285 * 60.00325 * 4 2 1 6 6 H 1.08005 * 119.99659 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00451 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00400 * 179.97438 * 7 5 4 9 9 Si 1.86809 * 119.99684 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47151 * 89.99954 * 9 7 5 11 11 H 1.48504 * 109.46975 * 210.00246 * 9 7 5 12 12 H 1.48504 * 109.47056 * 329.99950 * 9 7 5 13 13 C 1.53005 * 109.47201 * 120.00202 * 2 1 3 14 14 N 1.46896 * 109.46633 * 292.73932 * 13 2 1 15 15 C 1.48055 * 110.99893 * 178.67036 * 14 13 2 16 16 C 1.51191 * 105.74533 * 213.02179 * 15 14 13 17 17 C 1.38081 * 131.88097 * 197.47843 * 16 15 14 18 18 C 1.38240 * 120.20309 * 180.02562 * 17 16 15 19 19 C 1.38169 * 120.06844 * 0.02562 * 18 17 16 20 20 C 1.38722 * 119.93746 * 359.97438 * 19 18 17 21 21 O 1.35898 * 120.04359 * 180.02562 * 20 19 18 22 22 C 1.38545 * 108.14827 * 17.52682 * 16 15 14 23 23 C 1.48061 * 111.00213 * 63.68283 * 14 13 2 24 24 H 1.08998 * 109.47026 * 320.32423 * 1 2 3 25 25 H 1.09001 * 109.46597 * 80.32001 * 1 2 3 26 26 H 1.09001 * 109.47280 * 200.31907 * 1 2 3 27 27 H 1.09000 * 109.47232 * 185.25429 * 3 2 1 28 28 H 1.09003 * 109.46997 * 305.24711 * 3 2 1 29 29 H 1.08999 * 109.47059 * 65.25050 * 3 2 1 30 30 H 1.08998 * 109.47275 * 180.02562 * 4 2 1 31 31 H 1.08996 * 109.47378 * 300.00168 * 4 2 1 32 32 H 0.96997 * 119.99699 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47441 * 172.73877 * 13 2 1 34 34 H 1.08998 * 109.47008 * 52.73743 * 13 2 1 35 35 H 1.08998 * 110.20754 * 332.10652 * 15 14 13 36 36 H 1.08994 * 110.21188 * 93.92496 * 15 14 13 37 37 H 1.07996 * 119.86611 * 0.02562 * 17 16 15 38 38 H 1.08003 * 119.96470 * 179.97438 * 18 17 16 39 39 H 1.08001 * 120.03342 * 180.02562 * 19 18 17 40 40 H 0.96706 * 114.00052 * 269.98129 * 21 20 19 41 41 H 1.09002 * 110.20375 * 265.98187 * 23 14 13 42 42 H 1.09000 * 110.20566 * 27.80354 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8703 -0.4822 -3.7320 8 7 1.4316 0.1375 -4.8058 9 14 2.9443 -2.0011 -3.9034 10 1 2.0857 -3.2119 -3.9482 11 1 3.7358 -1.9089 -5.1565 12 1 3.8651 -2.0899 -2.7417 13 6 2.0401 -0.7213 1.2493 14 7 1.6985 0.0649 2.4422 15 6 2.1494 -0.6192 3.6754 16 6 1.1305 -0.2675 4.7356 17 6 1.1719 -0.3395 6.1139 18 6 0.0790 0.0528 6.8640 19 6 -1.0603 0.5185 6.2362 20 6 -1.1067 0.5927 4.8517 21 8 -2.2260 1.0509 4.2320 22 6 -0.0094 0.1986 4.1009 23 6 0.2308 0.1660 2.6088 24 1 -0.3633 0.7909 0.6561 25 1 -0.3632 0.1728 -1.0131 26 1 -0.3634 -0.9637 0.3569 27 1 3.1260 1.4439 -0.0941 28 1 1.6020 1.9827 -0.8393 29 1 1.7556 1.9284 0.9333 30 1 3.1300 -0.7217 -1.2491 31 1 1.6767 -1.7489 -1.2493 32 1 1.6660 -0.1940 -5.6868 33 1 3.1223 -0.8352 1.1867 34 1 1.5745 -1.7046 1.3165 35 1 2.1741 -1.6978 3.5201 36 1 3.1358 -0.2586 3.9669 37 1 2.0611 -0.7036 6.6069 38 1 0.1155 -0.0055 7.9418 39 1 -1.9137 0.8253 6.8227 40 1 -2.8684 0.3602 4.0189 41 1 -0.1381 1.0823 2.1478 42 1 -0.2590 -0.7014 2.1661 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877703067.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:58 Heat of formation + Delta-G solvation = -1.420238 kcal Electronic energy + Delta-G solvation = -21584.211288 eV Core-core repulsion = 18529.675933 eV Total energy + Delta-G solvation = -3054.535355 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.76613 -38.50130 -36.93489 -35.31982 -32.37414 -30.79791 -30.50598 -28.22979 -27.22763 -26.29232 -26.06922 -23.22187 -21.77104 -21.49679 -21.06814 -18.37659 -17.70224 -16.76240 -16.39346 -16.01593 -15.64189 -15.07914 -14.54542 -14.45776 -14.02623 -13.45815 -13.30432 -13.26569 -12.81176 -12.74742 -12.30892 -12.27933 -11.99410 -11.91697 -11.57032 -11.37773 -11.06158 -10.87900 -10.76790 -10.55712 -10.40865 -10.25016 -9.78725 -9.67881 -9.27120 -9.03853 -8.89504 -8.73037 -8.49568 -8.12450 -5.99790 -3.95974 1.07350 1.11742 3.31716 3.39789 3.41323 3.42966 4.01563 4.14360 4.26869 4.48187 4.51130 4.82798 5.11235 5.27162 5.28331 5.32478 5.36944 5.48185 5.54486 5.60677 5.74276 5.76444 5.85386 5.97343 6.10068 6.18521 6.20492 6.25291 6.34775 6.42689 6.57464 6.61263 6.64172 6.83299 6.89741 7.07130 7.15618 7.18808 7.27386 7.36489 7.48633 7.51946 7.84867 8.59916 9.06221 9.63140 11.13299 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034062 B = 0.004042 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.841132 B = 6925.929148 C = 7391.978267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.047 4.047 3 C -0.118 4.118 4 C -0.003 4.003 5 C -0.507 4.507 6 H 0.078 0.922 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.875 3.125 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.052 3.948 14 N -0.494 5.494 15 C 0.071 3.929 16 C -0.085 4.085 17 C -0.112 4.112 18 C -0.107 4.107 19 C -0.147 4.147 20 C 0.122 3.878 21 O -0.496 6.496 22 C -0.125 4.125 23 C 0.075 3.925 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.035 0.965 27 H 0.041 0.959 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.015 0.985 31 H 0.007 0.993 32 H 0.261 0.739 33 H 0.075 0.925 34 H 0.032 0.968 35 H 0.060 0.940 36 H 0.090 0.910 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.389 0.611 41 H 0.104 0.896 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.068 -2.738 22.447 22.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.047 4.047 3 C -0.175 4.175 4 C -0.041 4.041 5 C -0.545 4.545 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.703 3.297 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.076 4.076 14 N -0.217 5.217 15 C -0.056 4.056 16 C -0.085 4.085 17 C -0.130 4.130 18 C -0.125 4.125 19 C -0.166 4.166 20 C 0.077 3.923 21 O -0.306 6.306 22 C -0.127 4.127 23 C -0.052 4.052 24 H 0.069 0.931 25 H 0.095 0.905 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.034 0.966 31 H 0.026 0.974 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.109 0.891 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.245 0.755 41 H 0.121 0.879 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.514 -1.677 22.195 22.400 hybrid contribution -0.031 -2.164 -0.204 2.174 sum -2.544 -3.841 21.991 22.468 Atomic orbital electron populations 1.22381 0.95682 0.99256 1.03356 1.20396 0.95106 0.96337 0.92872 1.21619 1.00052 0.95293 1.00517 1.19627 0.96035 0.95226 0.93198 1.21124 1.31508 1.13216 0.88640 0.90363 1.25013 0.95785 0.96742 0.96018 1.69908 1.46108 1.40614 0.97830 0.86855 0.81318 0.83981 0.77538 1.20531 1.21538 1.19130 1.22629 1.00982 0.94014 0.89936 1.65350 1.09545 1.45489 1.01321 1.21697 0.97813 0.97569 0.88532 1.20604 0.95680 0.98347 0.93897 1.20458 0.99003 1.01454 0.92119 1.20904 0.92748 0.99077 0.99762 1.21320 0.99667 1.02130 0.93444 1.17923 0.86904 0.97567 0.89910 1.84832 1.29336 1.36991 1.79437 1.21260 0.94674 0.99372 0.97346 1.22136 0.90086 1.03217 0.89760 0.93069 0.90544 0.94582 0.93986 0.92317 0.93389 0.96639 0.97424 0.92882 0.90626 0.94927 0.92205 0.89136 0.85862 0.85437 0.85286 0.75538 0.87863 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 7.05 37.16 0.26 -2.49 16 2 C -0.05 -0.90 0.56 -154.50 -0.09 -0.99 16 3 C -0.12 -2.29 7.88 37.16 0.29 -1.99 16 4 C 0.00 -0.07 3.11 -27.88 -0.09 -0.16 16 5 C -0.51 -13.92 7.97 -34.44 -0.27 -14.20 16 6 H 0.08 2.30 6.13 -52.48 -0.32 1.98 16 7 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 8 N -0.91 -27.70 13.96 55.43 0.77 -26.93 16 9 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 13 C 0.05 0.85 3.89 -3.82 -0.01 0.83 16 14 N -0.49 -7.35 4.36 -234.91 -1.02 -8.38 16 15 C 0.07 0.89 6.61 -4.10 -0.03 0.87 16 16 C -0.08 -1.04 6.27 -104.33 -0.65 -1.69 16 17 C -0.11 -1.14 10.03 -39.64 -0.40 -1.53 16 18 C -0.11 -0.99 10.04 -39.61 -0.40 -1.39 16 19 C -0.15 -1.49 9.99 -39.43 -0.39 -1.89 16 20 C 0.12 1.47 6.70 -39.24 -0.26 1.20 16 21 O -0.50 -5.54 13.49 -19.42 -0.26 -5.80 16 22 C -0.13 -1.66 6.21 -104.12 -0.65 -2.31 16 23 C 0.07 1.07 4.58 -4.11 -0.02 1.05 16 24 H 0.05 0.85 4.91 -51.93 -0.25 0.59 16 25 H 0.08 1.63 6.24 -51.93 -0.32 1.30 16 26 H 0.04 0.60 6.67 -51.93 -0.35 0.26 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 1.25 6.80 -51.93 -0.35 0.90 16 29 H 0.05 0.86 7.19 -51.93 -0.37 0.49 16 30 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 31 H 0.01 0.18 7.57 -51.93 -0.39 -0.22 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.03 0.52 7.75 -51.93 -0.40 0.11 16 35 H 0.06 0.70 7.75 -51.93 -0.40 0.30 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 39 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.39 2.53 9.06 45.56 0.41 2.94 16 41 H 0.10 1.60 6.09 -51.93 -0.32 1.28 16 42 H 0.07 0.98 5.78 -51.93 -0.30 0.68 16 LS Contribution 322.43 15.07 4.86 4.86 Total: -1.00 -31.53 322.43 -8.58 -40.11 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -5.45 Total: 2.07 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: -2.80 Total: -22.92 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: -0.25 Total: -35.30 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.26 Total: -5.80 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.53 -8.58 -40.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877703067.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.689 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds