Wall clock time and date at job start Mon Mar 30 2020 02:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47362 * 2 1 4 4 C 1.53001 * 109.47025 * 239.99873 * 2 1 3 5 5 C 1.50700 * 109.47285 * 60.00325 * 4 2 1 6 6 H 1.08005 * 119.99659 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00451 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00400 * 179.97438 * 7 5 4 9 9 Si 1.86809 * 119.99684 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47151 * 89.99954 * 9 7 5 11 11 H 1.48504 * 109.46975 * 210.00246 * 9 7 5 12 12 H 1.48504 * 109.47056 * 329.99950 * 9 7 5 13 13 C 1.53005 * 109.47201 * 120.00202 * 2 1 3 14 14 N 1.46896 * 109.46633 * 292.73932 * 13 2 1 15 15 C 1.48055 * 110.99893 * 178.67036 * 14 13 2 16 16 C 1.51191 * 105.74533 * 213.02179 * 15 14 13 17 17 C 1.38081 * 131.88097 * 197.47843 * 16 15 14 18 18 C 1.38240 * 120.20309 * 180.02562 * 17 16 15 19 19 C 1.38169 * 120.06844 * 0.02562 * 18 17 16 20 20 C 1.38722 * 119.93746 * 359.97438 * 19 18 17 21 21 O 1.35898 * 120.04359 * 180.02562 * 20 19 18 22 22 C 1.38545 * 108.14827 * 17.52682 * 16 15 14 23 23 C 1.48061 * 111.00213 * 63.68283 * 14 13 2 24 24 H 1.08998 * 109.47026 * 320.32423 * 1 2 3 25 25 H 1.09001 * 109.46597 * 80.32001 * 1 2 3 26 26 H 1.09001 * 109.47280 * 200.31907 * 1 2 3 27 27 H 1.09000 * 109.47232 * 185.25429 * 3 2 1 28 28 H 1.09003 * 109.46997 * 305.24711 * 3 2 1 29 29 H 1.08999 * 109.47059 * 65.25050 * 3 2 1 30 30 H 1.08998 * 109.47275 * 180.02562 * 4 2 1 31 31 H 1.08996 * 109.47378 * 300.00168 * 4 2 1 32 32 H 0.96997 * 119.99699 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47441 * 172.73877 * 13 2 1 34 34 H 1.08998 * 109.47008 * 52.73743 * 13 2 1 35 35 H 1.08998 * 110.20754 * 332.10652 * 15 14 13 36 36 H 1.08994 * 110.21188 * 93.92496 * 15 14 13 37 37 H 1.07996 * 119.86611 * 0.02562 * 17 16 15 38 38 H 1.08003 * 119.96470 * 179.97438 * 18 17 16 39 39 H 1.08001 * 120.03342 * 180.02562 * 19 18 17 40 40 H 0.96706 * 114.00052 * 269.98129 * 21 20 19 41 41 H 1.09002 * 110.20375 * 265.98187 * 23 14 13 42 42 H 1.09000 * 110.20566 * 27.80354 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8703 -0.4822 -3.7320 8 7 1.4316 0.1375 -4.8058 9 14 2.9443 -2.0011 -3.9034 10 1 2.0857 -3.2119 -3.9482 11 1 3.7358 -1.9089 -5.1565 12 1 3.8651 -2.0899 -2.7417 13 6 2.0401 -0.7213 1.2493 14 7 1.6985 0.0649 2.4422 15 6 2.1494 -0.6192 3.6754 16 6 1.1305 -0.2675 4.7356 17 6 1.1719 -0.3395 6.1139 18 6 0.0790 0.0528 6.8640 19 6 -1.0603 0.5185 6.2362 20 6 -1.1067 0.5927 4.8517 21 8 -2.2260 1.0509 4.2320 22 6 -0.0094 0.1986 4.1009 23 6 0.2308 0.1660 2.6088 24 1 -0.3633 0.7909 0.6561 25 1 -0.3632 0.1728 -1.0131 26 1 -0.3634 -0.9637 0.3569 27 1 3.1260 1.4439 -0.0941 28 1 1.6020 1.9827 -0.8393 29 1 1.7556 1.9284 0.9333 30 1 3.1300 -0.7217 -1.2491 31 1 1.6767 -1.7489 -1.2493 32 1 1.6660 -0.1940 -5.6868 33 1 3.1223 -0.8352 1.1867 34 1 1.5745 -1.7046 1.3165 35 1 2.1741 -1.6978 3.5201 36 1 3.1358 -0.2586 3.9669 37 1 2.0611 -0.7036 6.6069 38 1 0.1155 -0.0055 7.9418 39 1 -1.9137 0.8253 6.8227 40 1 -2.8684 0.3602 4.0189 41 1 -0.1381 1.0823 2.1478 42 1 -0.2590 -0.7014 2.1661 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877703067.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:57 Heat of formation + Delta-G solvation = -22.705648 kcal Electronic energy + Delta-G solvation = -21585.134293 eV Core-core repulsion = 18529.675933 eV Total energy + Delta-G solvation = -3055.458359 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.70902 -39.63664 -37.96972 -36.51825 -34.41430 -31.91253 -31.43296 -29.78108 -28.67449 -27.53987 -27.42445 -24.76991 -23.08919 -22.34295 -22.11625 -19.70926 -18.86488 -18.78151 -17.38161 -16.90625 -16.56229 -16.22421 -16.15403 -15.59441 -15.44706 -14.89906 -14.73673 -14.46701 -14.21393 -14.06013 -13.77028 -13.46670 -13.03664 -13.00151 -12.91639 -12.69609 -12.60848 -12.39484 -12.24307 -12.06625 -11.88843 -11.69448 -11.45350 -11.35287 -10.94500 -10.80856 -10.69457 -9.98461 -9.52742 -9.15563 -8.21322 -6.21880 0.28956 0.30418 1.36210 1.38445 1.49473 2.40032 2.64055 2.95429 3.13679 3.33809 3.39070 3.58442 4.03347 4.09399 4.14393 4.22387 4.37828 4.41118 4.49353 4.51602 4.62601 4.68528 4.79828 4.81147 4.87440 4.94659 4.97530 5.01912 5.08194 5.16700 5.36842 5.40791 5.42028 5.45037 5.48680 5.52986 5.60113 5.70775 5.78579 5.89020 5.91454 6.03129 6.41363 6.84238 6.85137 7.40348 8.95057 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034062 B = 0.004042 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.841132 B = 6925.929148 C = 7391.978267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.047 4.047 3 C -0.108 4.108 4 C 0.000 4.000 5 C -0.504 4.504 6 H 0.042 0.958 7 C 0.000 4.000 8 N -0.955 5.955 9 Si 0.942 3.058 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.247 1.247 13 C 0.064 3.936 14 N -0.506 5.506 15 C 0.073 3.927 16 C -0.096 4.096 17 C -0.114 4.114 18 C -0.099 4.099 19 C -0.151 4.151 20 C 0.110 3.890 21 O -0.511 6.511 22 C -0.154 4.154 23 C 0.080 3.920 24 H 0.066 0.934 25 H 0.038 0.962 26 H 0.051 0.949 27 H 0.040 0.960 28 H 0.026 0.974 29 H 0.062 0.938 30 H 0.017 0.983 31 H 0.013 0.987 32 H 0.262 0.738 33 H 0.081 0.919 34 H 0.041 0.959 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.149 0.851 38 H 0.161 0.839 39 H 0.149 0.851 40 H 0.406 0.594 41 H 0.083 0.917 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.157 -4.401 25.762 26.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.047 4.047 3 C -0.165 4.165 4 C -0.038 4.038 5 C -0.542 4.542 6 H 0.060 0.940 7 C -0.195 4.195 8 N -0.597 5.597 9 Si 0.767 3.233 10 H -0.195 1.195 11 H -0.215 1.215 12 H -0.170 1.170 13 C -0.064 4.064 14 N -0.229 5.229 15 C -0.054 4.054 16 C -0.097 4.097 17 C -0.132 4.132 18 C -0.117 4.117 19 C -0.169 4.169 20 C 0.065 3.935 21 O -0.324 6.324 22 C -0.155 4.155 23 C -0.047 4.047 24 H 0.085 0.915 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.046 0.954 29 H 0.081 0.919 30 H 0.035 0.965 31 H 0.032 0.968 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.166 0.834 38 H 0.178 0.822 39 H 0.166 0.834 40 H 0.265 0.735 41 H 0.101 0.899 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.611 -3.349 25.537 25.806 hybrid contribution -0.413 -1.545 -1.150 1.970 sum -2.024 -4.894 24.387 24.955 Atomic orbital electron populations 1.22284 0.95332 1.00787 1.01341 1.20321 0.95430 0.95926 0.93046 1.21508 0.99624 0.95507 0.99856 1.19574 0.95876 0.95302 0.93061 1.21405 1.30178 1.12088 0.90543 0.93999 1.25938 0.97582 1.00319 0.95680 1.70070 1.48292 1.42897 0.98470 0.85779 0.79696 0.79842 0.78025 1.19542 1.21522 1.17048 1.22380 1.01167 0.93881 0.89004 1.65252 1.10012 1.45821 1.01834 1.21722 0.98337 0.97958 0.87411 1.20717 0.95137 0.98981 0.94847 1.20796 1.00260 1.00823 0.91299 1.21332 0.91752 0.97183 1.01409 1.21613 1.00848 1.01726 0.92740 1.18164 0.86834 0.97724 0.90786 1.84777 1.29687 1.38300 1.79616 1.21255 0.95985 1.01661 0.96587 1.21926 0.89716 1.02006 0.91037 0.91529 0.94333 0.92977 0.94103 0.95435 0.91928 0.96518 0.96831 0.92891 0.90043 0.94100 0.91230 0.88061 0.83374 0.82164 0.83371 0.73546 0.89898 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.25 7.05 71.98 0.51 -4.75 16 2 C -0.05 -1.80 0.56 -52.18 -0.03 -1.82 16 3 C -0.11 -4.25 7.88 71.98 0.57 -3.68 16 4 C 0.00 -0.01 3.11 29.85 0.09 0.08 16 5 C -0.50 -28.54 7.97 25.60 0.20 -28.34 16 6 H 0.04 2.62 6.13 -2.91 -0.02 2.60 16 7 C 0.00 0.02 5.47 84.65 0.46 0.49 16 8 N -0.96 -60.51 13.96 21.45 0.30 -60.21 16 9 Si 0.94 44.61 27.47 68.60 1.88 46.49 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 12 H -0.25 -10.82 6.54 99.48 0.65 -10.16 16 13 C 0.06 1.96 3.89 86.31 0.34 2.30 16 14 N -0.51 -14.27 4.36 -897.13 -3.91 -18.18 16 15 C 0.07 1.64 6.61 85.49 0.56 2.20 16 16 C -0.10 -2.13 6.27 -19.67 -0.12 -2.25 16 17 C -0.11 -1.91 10.03 22.23 0.22 -1.68 16 18 C -0.10 -1.45 10.04 22.25 0.22 -1.23 16 19 C -0.15 -2.64 9.99 22.37 0.22 -2.41 16 20 C 0.11 2.47 6.70 22.49 0.15 2.62 16 21 O -0.51 -10.96 13.49 -92.40 -1.25 -12.21 16 22 C -0.15 -3.87 6.21 -19.54 -0.12 -3.99 16 23 C 0.08 2.23 4.58 85.48 0.39 2.62 16 24 H 0.07 2.27 4.91 -2.39 -0.01 2.25 16 25 H 0.04 1.71 6.24 -2.39 -0.01 1.69 16 26 H 0.05 1.74 6.67 -2.39 -0.02 1.72 16 27 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.03 1.22 6.80 -2.39 -0.02 1.20 16 29 H 0.06 2.26 7.19 -2.39 -0.02 2.24 16 30 H 0.02 0.76 7.20 -2.39 -0.02 0.75 16 31 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 32 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 33 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.04 1.20 7.75 -2.39 -0.02 1.18 16 35 H 0.07 1.43 7.75 -2.39 -0.02 1.41 16 36 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 38 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 39 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 40 H 0.41 4.95 9.06 -74.05 -0.67 4.28 16 41 H 0.08 2.58 6.09 -2.39 -0.01 2.57 16 42 H 0.07 1.80 5.78 -2.39 -0.01 1.79 16 Total: -1.00 -69.69 322.43 1.00 -68.69 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.30 Total: 15.26 kcal Atomic # 6 Polarization: -43.52 SS G_CDS: 3.67 Total: -39.84 kcal Atomic # 7 Polarization: -74.77 SS G_CDS: -3.61 Total: -78.39 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: -1.25 Total: -12.21 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.49 kcal Total: -69.69 1.00 -68.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877703067.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.983 kcal (2) G-P(sol) polarization free energy of solvation -69.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds