Wall clock time and date at job start Mon Mar 30 2020 01:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35902 * 116.99558 * 2 1 4 4 C 1.38746 * 120.05957 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.94665 * 180.02562 * 4 3 2 6 6 C 1.38281 * 120.05158 * 359.97438 * 5 4 3 7 7 C 1.38237 * 120.11679 * 0.04539 * 6 5 4 8 8 C 1.50697 * 119.97586 * 179.97438 * 7 6 5 9 9 H 1.09003 * 110.78247 * 339.95574 * 8 7 6 10 10 C 1.55161 * 110.72185 * 216.72139 * 8 7 6 11 11 C 1.54908 * 101.58083 * 206.13372 * 10 8 7 12 12 N 1.47422 * 104.83363 * 37.00649 * 11 10 8 13 13 C 1.36940 * 125.64844 * 155.90632 * 12 11 10 14 14 H 1.07997 * 120.00145 * 147.96348 * 13 12 11 15 15 C 1.38819 * 119.99920 * 327.96530 * 13 12 11 16 16 N 1.31614 * 119.99668 * 158.45685 * 15 13 12 17 17 Si 1.86797 * 119.99818 * 338.45718 * 15 13 12 18 18 H 1.48495 * 109.47110 * 95.22527 * 17 15 13 19 19 H 1.48505 * 109.46639 * 215.22393 * 17 15 13 20 20 H 1.48500 * 109.47356 * 335.22091 * 17 15 13 21 21 C 1.47020 * 108.70614 * 335.87250 * 12 11 10 22 22 C 1.53005 * 109.88224 * 120.47372 * 21 12 11 23 23 C 1.53000 * 109.88168 * 241.64034 * 21 12 11 24 24 C 1.38174 * 120.05381 * 0.22993 * 7 6 5 25 25 H 1.09000 * 109.47467 * 300.00301 * 1 2 3 26 26 H 1.09000 * 109.47304 * 60.00408 * 1 2 3 27 27 H 1.08999 * 109.46727 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.03136 * 0.02562 * 4 3 2 29 29 H 1.08002 * 119.96838 * 180.02562 * 5 4 3 30 30 H 1.08003 * 119.94131 * 180.02562 * 6 5 4 31 31 H 1.09000 * 111.00489 * 88.05774 * 10 8 7 32 32 H 1.08994 * 110.99974 * 324.20401 * 10 8 7 33 33 H 1.08998 * 110.36849 * 278.17091 * 11 10 8 34 34 H 1.08994 * 110.46207 * 155.89362 * 11 10 8 35 35 H 0.97002 * 119.99619 * 180.02562 * 16 15 13 36 36 H 1.08991 * 109.47001 * 64.22673 * 22 21 12 37 37 H 1.09001 * 109.46801 * 184.22349 * 22 21 12 38 38 H 1.08999 * 109.47083 * 304.22295 * 22 21 12 39 39 H 1.08997 * 109.46788 * 58.54838 * 23 21 12 40 40 H 1.09004 * 109.46748 * 178.53968 * 23 21 12 41 41 H 1.08995 * 109.46990 * 298.54212 * 23 21 12 42 42 H 1.08003 * 120.02417 * 179.74562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6049 -0.0011 6 6 3.3017 3.6759 -0.0005 7 6 4.0558 2.5173 -0.0004 8 6 5.5606 2.5984 -0.0004 9 1 5.8953 3.5751 -0.3498 10 6 6.1714 1.4663 -0.8680 11 6 7.5670 1.2947 -0.2179 12 7 7.3375 1.4890 1.2253 13 6 8.1249 0.9972 2.2320 14 1 8.2303 1.5496 3.1540 15 6 8.7876 -0.2114 2.0673 16 7 9.8434 -0.4885 2.8027 17 14 8.1809 -1.4444 0.8020 18 1 8.9377 -1.2681 -0.4634 19 1 8.3883 -2.8225 1.3149 20 1 6.7346 -1.2229 0.5488 21 6 6.1236 2.2989 1.4049 22 6 5.0931 1.5176 2.2227 23 6 6.4721 3.6081 2.1158 24 6 3.4310 1.2849 -0.0056 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2127 2.3204 -0.0005 29 1 1.3338 4.5114 -0.0011 30 1 3.7920 4.6382 -0.0005 31 1 6.2609 1.7768 -1.9090 32 1 5.5861 0.5507 -0.7839 33 1 8.2573 2.0483 -0.5970 34 1 7.9560 0.2947 -0.4089 35 1 10.3067 -1.3328 2.6874 36 1 5.4829 1.3411 3.2250 37 1 4.1696 2.0928 2.2881 38 1 4.8927 0.5624 1.7373 39 1 7.2109 4.1543 1.5295 40 1 5.5725 4.2143 2.2223 41 1 6.8810 3.3883 3.1020 42 1 4.0207 0.3801 -0.0097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880285247.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:28 Heat of formation + Delta-G solvation = 18.006052 kcal Electronic energy + Delta-G solvation = -22365.558115 eV Core-core repulsion = 19311.865148 eV Total energy + Delta-G solvation = -3053.692968 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.39572 -38.90259 -36.89667 -33.06694 -31.61576 -31.33833 -30.40642 -28.78099 -27.36747 -26.39015 -25.02440 -23.68546 -22.60561 -21.52655 -20.32916 -18.56063 -17.44103 -16.55706 -16.09340 -15.88889 -15.75638 -15.46957 -14.69343 -14.01203 -13.85018 -13.60104 -13.39945 -13.03547 -12.64726 -12.45616 -12.38343 -12.08760 -11.91165 -11.66227 -11.43717 -11.37551 -11.26360 -10.96388 -10.83816 -10.67839 -10.43761 -10.35384 -10.12184 -9.86452 -9.72977 -9.37349 -8.54311 -8.42956 -8.08610 -6.82633 -5.92891 -3.28530 1.44224 1.57175 3.27589 3.36583 3.51526 3.56864 3.86711 4.58822 4.78108 4.79776 4.99737 5.01574 5.02003 5.16700 5.21291 5.32932 5.40938 5.42997 5.51952 5.61365 5.65441 5.72539 5.94506 6.05413 6.08412 6.18079 6.25931 6.34051 6.37580 6.42498 6.52038 6.58308 6.64530 6.70347 6.75030 6.79132 6.85489 6.95347 7.07184 7.22099 7.46213 7.95883 8.41209 8.93382 9.74681 10.31900 11.23748 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021588 B = 0.006219 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.733534 B = 4501.534062 C = 5138.343481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.318 6.318 3 C 0.123 3.877 4 C -0.220 4.220 5 C -0.083 4.083 6 C -0.156 4.156 7 C -0.011 4.011 8 C -0.058 4.058 9 H 0.086 0.914 10 C -0.133 4.133 11 C 0.120 3.880 12 N -0.597 5.597 13 C -0.235 4.235 14 H 0.085 0.915 15 C 0.030 3.970 16 N -0.906 5.906 17 Si 0.880 3.120 18 H -0.288 1.288 19 H -0.304 1.304 20 H -0.269 1.269 21 C 0.189 3.811 22 C -0.146 4.146 23 C -0.145 4.145 24 C -0.141 4.141 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.096 0.904 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.032 0.968 34 H 0.042 0.958 35 H 0.262 0.738 36 H 0.054 0.946 37 H 0.041 0.959 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.040 0.960 41 H 0.056 0.944 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.899 6.562 -7.494 20.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.079 3.921 4 C -0.238 4.238 5 C -0.101 4.101 6 C -0.174 4.174 7 C -0.011 4.011 8 C -0.077 4.077 9 H 0.105 0.895 10 C -0.171 4.171 11 C -0.005 4.005 12 N -0.322 5.322 13 C -0.363 4.363 14 H 0.102 0.898 15 C -0.170 4.170 16 N -0.548 5.548 17 Si 0.712 3.288 18 H -0.216 1.216 19 H -0.232 1.232 20 H -0.194 1.194 21 C 0.101 3.899 22 C -0.205 4.205 23 C -0.204 4.204 24 C -0.159 4.159 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.115 0.885 28 H 0.139 0.861 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.619 6.209 -7.361 20.079 hybrid contribution -0.539 -0.743 -0.624 1.110 sum -18.158 5.466 -7.985 20.576 Atomic orbital electron populations 1.22998 0.78875 1.03624 1.01079 1.86095 1.20978 1.27225 1.88903 1.18993 0.92254 0.83957 0.96940 1.21108 0.99518 0.92516 1.10701 1.20823 0.94520 0.96659 0.98096 1.20931 0.93524 0.98018 1.04925 1.19519 0.95263 0.91904 0.94419 1.21294 0.89330 0.99617 0.97446 0.89546 1.22992 0.97850 0.98205 0.98046 1.21846 0.93860 0.98786 0.85978 1.44755 1.25124 1.61746 1.00550 1.18489 1.20210 1.01002 0.96586 0.89794 1.25295 0.97204 0.96977 0.97522 1.69837 1.17923 1.24403 1.42682 0.86840 0.80191 0.81023 0.80785 1.21643 1.23248 1.19418 1.20346 0.87182 0.91456 0.90882 1.22299 0.97386 0.99859 1.00935 1.22112 0.99591 0.97221 1.01428 1.20474 0.90973 0.98948 1.05544 0.92816 0.92923 0.88518 0.86060 0.86195 0.86016 0.91388 0.90998 0.95004 0.94037 0.92790 0.92689 0.94028 0.92951 0.93199 0.94063 0.92450 0.84832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.44 10.50 -19.43 -0.20 -4.64 16 3 C 0.12 1.79 6.69 -39.22 -0.26 1.53 16 4 C -0.22 -2.68 9.04 -39.43 -0.36 -3.03 16 5 C -0.08 -0.97 10.04 -39.61 -0.40 -1.37 16 6 C -0.16 -2.03 9.68 -39.57 -0.38 -2.42 16 7 C -0.01 -0.16 3.56 -104.65 -0.37 -0.53 16 8 C -0.06 -0.97 2.65 -89.93 -0.24 -1.20 16 9 H 0.09 1.31 7.77 -51.93 -0.40 0.91 16 10 C -0.13 -2.36 6.37 -24.58 -0.16 -2.52 16 11 C 0.12 2.61 6.28 -2.53 -0.02 2.59 16 12 N -0.60 -14.19 2.47 -155.37 -0.38 -14.58 16 13 C -0.24 -6.59 9.73 -15.06 -0.15 -6.74 16 14 H 0.08 2.52 7.65 -52.49 -0.40 2.12 16 15 C 0.03 0.86 5.43 -17.43 -0.09 0.77 16 16 N -0.91 -28.03 13.97 55.49 0.78 -27.26 16 17 Si 0.88 22.86 24.85 -169.99 -4.22 18.63 16 18 H -0.29 -7.33 6.81 56.52 0.38 -6.95 16 19 H -0.30 -8.05 7.11 56.52 0.40 -7.65 16 20 H -0.27 -6.80 7.09 56.52 0.40 -6.40 16 21 C 0.19 3.72 0.91 -130.84 -0.12 3.60 16 22 C -0.15 -2.88 7.07 37.16 0.26 -2.62 16 23 C -0.14 -2.63 8.45 37.16 0.31 -2.32 16 24 C -0.14 -2.26 6.83 -39.43 -0.27 -2.53 16 25 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 26 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 27 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.12 1.17 6.30 -52.49 -0.33 0.84 16 29 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.33 5.85 -51.93 -0.30 1.03 16 33 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.04 0.99 3.10 -51.93 -0.16 0.83 16 35 H 0.26 7.72 8.31 -40.82 -0.34 7.39 16 36 H 0.05 1.16 8.06 -51.93 -0.42 0.74 16 37 H 0.04 0.73 6.68 -51.93 -0.35 0.39 16 38 H 0.05 1.09 6.34 -51.93 -0.33 0.76 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 1.14 7.67 -51.93 -0.40 0.74 16 42 H 0.13 2.36 5.36 -52.48 -0.28 2.08 16 LS Contribution 320.57 15.07 4.83 4.83 Total: -1.00 -31.56 320.57 -6.73 -38.29 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.28 Total: 0.26 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -1.24 Total: -15.54 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.39 Total: -41.84 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.20 Total: -4.64 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -4.22 Total: 18.63 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.56 -6.73 -38.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880285247.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.298 kcal (2) G-P(sol) polarization free energy of solvation -31.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds