Wall clock time and date at job start Mon Mar 30 2020 01:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35902 * 116.99558 * 2 1 4 4 C 1.38746 * 120.05957 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.94665 * 180.02562 * 4 3 2 6 6 C 1.38281 * 120.05158 * 359.97438 * 5 4 3 7 7 C 1.38237 * 120.11679 * 0.04539 * 6 5 4 8 8 C 1.50697 * 119.97586 * 179.97438 * 7 6 5 9 9 H 1.09003 * 110.78247 * 339.95574 * 8 7 6 10 10 C 1.55161 * 110.72185 * 216.72139 * 8 7 6 11 11 C 1.54908 * 101.58083 * 206.13372 * 10 8 7 12 12 N 1.47422 * 104.83363 * 37.00649 * 11 10 8 13 13 C 1.36940 * 125.64844 * 155.90632 * 12 11 10 14 14 H 1.07997 * 120.00145 * 147.96348 * 13 12 11 15 15 C 1.38819 * 119.99920 * 327.96530 * 13 12 11 16 16 N 1.31614 * 119.99668 * 158.45685 * 15 13 12 17 17 Si 1.86797 * 119.99818 * 338.45718 * 15 13 12 18 18 H 1.48495 * 109.47110 * 95.22527 * 17 15 13 19 19 H 1.48505 * 109.46639 * 215.22393 * 17 15 13 20 20 H 1.48500 * 109.47356 * 335.22091 * 17 15 13 21 21 C 1.47020 * 108.70614 * 335.87250 * 12 11 10 22 22 C 1.53005 * 109.88224 * 120.47372 * 21 12 11 23 23 C 1.53000 * 109.88168 * 241.64034 * 21 12 11 24 24 C 1.38174 * 120.05381 * 0.22993 * 7 6 5 25 25 H 1.09000 * 109.47467 * 300.00301 * 1 2 3 26 26 H 1.09000 * 109.47304 * 60.00408 * 1 2 3 27 27 H 1.08999 * 109.46727 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.03136 * 0.02562 * 4 3 2 29 29 H 1.08002 * 119.96838 * 180.02562 * 5 4 3 30 30 H 1.08003 * 119.94131 * 180.02562 * 6 5 4 31 31 H 1.09000 * 111.00489 * 88.05774 * 10 8 7 32 32 H 1.08994 * 110.99974 * 324.20401 * 10 8 7 33 33 H 1.08998 * 110.36849 * 278.17091 * 11 10 8 34 34 H 1.08994 * 110.46207 * 155.89362 * 11 10 8 35 35 H 0.97002 * 119.99619 * 180.02562 * 16 15 13 36 36 H 1.08991 * 109.47001 * 64.22673 * 22 21 12 37 37 H 1.09001 * 109.46801 * 184.22349 * 22 21 12 38 38 H 1.08999 * 109.47083 * 304.22295 * 22 21 12 39 39 H 1.08997 * 109.46788 * 58.54838 * 23 21 12 40 40 H 1.09004 * 109.46748 * 178.53968 * 23 21 12 41 41 H 1.08995 * 109.46990 * 298.54212 * 23 21 12 42 42 H 1.08003 * 120.02417 * 179.74562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6049 -0.0011 6 6 3.3017 3.6759 -0.0005 7 6 4.0558 2.5173 -0.0004 8 6 5.5606 2.5984 -0.0004 9 1 5.8953 3.5751 -0.3498 10 6 6.1714 1.4663 -0.8680 11 6 7.5670 1.2947 -0.2179 12 7 7.3375 1.4890 1.2253 13 6 8.1249 0.9972 2.2320 14 1 8.2303 1.5496 3.1540 15 6 8.7876 -0.2114 2.0673 16 7 9.8434 -0.4885 2.8027 17 14 8.1809 -1.4444 0.8020 18 1 8.9377 -1.2681 -0.4634 19 1 8.3883 -2.8225 1.3149 20 1 6.7346 -1.2229 0.5488 21 6 6.1236 2.2989 1.4049 22 6 5.0931 1.5176 2.2227 23 6 6.4721 3.6081 2.1158 24 6 3.4310 1.2849 -0.0056 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2127 2.3204 -0.0005 29 1 1.3338 4.5114 -0.0011 30 1 3.7920 4.6382 -0.0005 31 1 6.2609 1.7768 -1.9090 32 1 5.5861 0.5507 -0.7839 33 1 8.2573 2.0483 -0.5970 34 1 7.9560 0.2947 -0.4089 35 1 10.3067 -1.3328 2.6874 36 1 5.4829 1.3411 3.2250 37 1 4.1696 2.0928 2.2881 38 1 4.8927 0.5624 1.7373 39 1 7.2109 4.1543 1.5295 40 1 5.5725 4.2143 2.2223 41 1 6.8810 3.3883 3.1020 42 1 4.0207 0.3801 -0.0097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880285247.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:27 Heat of formation + Delta-G solvation = -1.093423 kcal Electronic energy + Delta-G solvation = -22366.386331 eV Core-core repulsion = 19311.865148 eV Total energy + Delta-G solvation = -3054.521183 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.53088 -40.16867 -38.04715 -34.92432 -33.17747 -32.99518 -31.44356 -30.25936 -28.30266 -27.80157 -26.48941 -25.59489 -23.80000 -22.65370 -21.80114 -20.02204 -18.75280 -18.31887 -17.34246 -17.16104 -16.86203 -16.61867 -16.23101 -15.56309 -15.32419 -14.71658 -14.69091 -14.55716 -14.22143 -14.07978 -13.78978 -13.42796 -13.22935 -13.12775 -12.82490 -12.72075 -12.67429 -12.41903 -12.23575 -12.13406 -11.98184 -11.91962 -11.57029 -11.48282 -11.36289 -11.19176 -10.63561 -9.59110 -9.06761 -8.82105 -8.19433 -5.49698 0.42671 0.58239 1.25191 1.36225 1.47452 2.40707 2.43000 2.85067 3.04816 3.29976 3.77224 3.81831 3.94437 3.99256 4.17991 4.31558 4.35487 4.38367 4.40777 4.48038 4.50247 4.60613 4.63296 4.71063 4.72908 4.82564 4.87164 4.88687 4.95466 5.09515 5.14821 5.16932 5.18998 5.32978 5.41868 5.46786 5.56798 5.62509 5.78947 5.88957 5.94260 6.18831 6.54088 6.87058 7.58530 8.23287 9.01947 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021588 B = 0.006219 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.733534 B = 4501.534062 C = 5138.343481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.347 6.347 3 C 0.110 3.890 4 C -0.213 4.213 5 C -0.076 4.076 6 C -0.154 4.154 7 C -0.024 4.024 8 C -0.044 4.044 9 H 0.110 0.890 10 C -0.125 4.125 11 C 0.110 3.890 12 N -0.613 5.613 13 C -0.216 4.216 14 H 0.051 0.949 15 C -0.027 4.027 16 N -0.954 5.954 17 Si 0.941 3.059 18 H -0.279 1.279 19 H -0.313 1.313 20 H -0.264 1.264 21 C 0.178 3.822 22 C -0.132 4.132 23 C -0.137 4.137 24 C -0.164 4.164 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.112 0.888 28 H 0.150 0.850 29 H 0.156 0.844 30 H 0.145 0.855 31 H 0.101 0.899 32 H 0.060 0.940 33 H 0.041 0.959 34 H 0.021 0.979 35 H 0.261 0.739 36 H 0.027 0.973 37 H 0.064 0.936 38 H 0.034 0.966 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.029 0.971 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.192 8.763 -9.475 24.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.262 6.262 3 C 0.065 3.935 4 C -0.232 4.232 5 C -0.093 4.093 6 C -0.172 4.172 7 C -0.024 4.024 8 C -0.062 4.062 9 H 0.128 0.872 10 C -0.163 4.163 11 C -0.014 4.014 12 N -0.338 5.338 13 C -0.346 4.346 14 H 0.069 0.931 15 C -0.223 4.223 16 N -0.600 5.600 17 Si 0.772 3.228 18 H -0.206 1.206 19 H -0.242 1.242 20 H -0.189 1.189 21 C 0.091 3.909 22 C -0.191 4.191 23 C -0.196 4.196 24 C -0.183 4.183 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.130 0.870 28 H 0.167 0.833 29 H 0.174 0.826 30 H 0.162 0.838 31 H 0.119 0.881 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.039 0.961 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.083 0.917 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.048 0.952 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -20.956 8.433 -9.370 24.455 hybrid contribution 0.358 -1.341 0.019 1.388 sum -20.598 7.092 -9.351 23.707 Atomic orbital electron populations 1.23309 0.76473 1.05252 1.02372 1.86059 1.23582 1.27559 1.88951 1.19139 0.92009 0.85034 0.97295 1.21464 1.00914 0.91818 1.08983 1.21254 0.94279 0.97756 0.96057 1.21197 0.94210 0.97940 1.03882 1.19367 0.94177 0.92520 0.96383 1.21189 0.90585 1.00029 0.94444 0.87227 1.22946 0.94909 0.98598 0.99804 1.22008 0.96629 0.97781 0.85029 1.44884 1.26382 1.61810 1.00746 1.18356 1.19588 1.00228 0.96396 0.93148 1.25833 0.97640 0.98741 1.00050 1.69952 1.19635 1.24952 1.45462 0.85854 0.79841 0.78230 0.78915 1.20636 1.24180 1.18911 1.20622 0.85607 0.91160 0.93509 1.22165 0.98352 0.99540 0.99046 1.22025 1.01097 0.96855 0.99633 1.20369 0.91895 0.98335 1.07694 0.91668 0.91286 0.86987 0.83290 0.82611 0.83762 0.88056 0.92142 0.94121 0.96131 0.93004 0.95417 0.91689 0.94658 0.92882 0.90614 0.95227 0.87766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.35 -9.20 10.50 -92.45 -0.97 -10.17 16 3 C 0.11 2.96 6.69 22.50 0.15 3.11 16 4 C -0.21 -4.31 9.04 22.37 0.20 -4.11 16 5 C -0.08 -1.37 10.04 22.25 0.22 -1.15 16 6 C -0.15 -3.30 9.68 22.28 0.22 -3.08 16 7 C -0.02 -0.66 3.56 -19.88 -0.07 -0.73 16 8 C -0.04 -1.35 2.65 -10.35 -0.03 -1.37 16 9 H 0.11 2.87 7.77 -2.39 -0.02 2.85 16 10 C -0.12 -4.21 6.37 31.99 0.20 -4.01 16 11 C 0.11 4.70 6.28 86.86 0.55 5.25 16 12 N -0.61 -29.44 2.47 -645.48 -1.60 -31.04 16 13 C -0.22 -12.59 9.73 84.03 0.82 -11.77 16 14 H 0.05 3.22 7.65 -2.91 -0.02 3.20 16 15 C -0.03 -1.66 5.43 84.86 0.46 -1.20 16 16 N -0.95 -61.58 13.97 21.65 0.30 -61.28 16 17 Si 0.94 49.12 24.85 68.60 1.70 50.82 16 18 H -0.28 -13.95 6.81 99.48 0.68 -13.28 16 19 H -0.31 -16.57 7.11 99.48 0.71 -15.87 16 20 H -0.26 -13.37 7.09 99.48 0.71 -12.67 16 21 C 0.18 6.85 0.91 3.96 0.00 6.86 16 22 C -0.13 -5.24 7.07 71.98 0.51 -4.73 16 23 C -0.14 -4.82 8.45 71.98 0.61 -4.21 16 24 C -0.16 -5.06 6.83 22.37 0.15 -4.91 16 25 H 0.06 0.84 7.66 -2.39 -0.02 0.82 16 26 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 27 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.15 2.11 6.30 -2.91 -0.02 2.10 16 29 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 30 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 31 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.06 2.20 5.85 -2.39 -0.01 2.19 16 33 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.02 0.98 3.10 -2.39 -0.01 0.97 16 35 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 36 H 0.03 1.19 8.06 -2.39 -0.02 1.17 16 37 H 0.06 2.22 6.68 -2.39 -0.02 2.21 16 38 H 0.03 1.49 6.34 -2.39 -0.02 1.48 16 39 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.08 2.11 8.14 -2.38 -0.02 2.10 16 41 H 0.03 1.17 7.67 -2.39 -0.02 1.15 16 42 H 0.10 3.76 5.36 -2.91 -0.02 3.74 16 Total: -1.00 -72.04 320.57 5.52 -66.52 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 0.97 Total: 9.80 kcal Atomic # 6 Polarization: -29.76 SS G_CDS: 5.11 Total: -24.65 kcal Atomic # 7 Polarization: -91.02 SS G_CDS: -1.29 Total: -92.32 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -0.97 Total: -10.17 kcal Atomic # 14 Polarization: 49.12 SS G_CDS: 1.70 Total: 50.82 kcal Total: -72.04 5.52 -66.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880285247.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.424 kcal (2) G-P(sol) polarization free energy of solvation -72.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds