Wall clock time and date at job start Mon Mar 30 2020 01:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35897 * 117.00260 * 2 1 4 4 C 1.38756 * 120.05385 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.94205 * 180.02562 * 4 3 2 6 6 C 1.38290 * 120.05390 * 0.02562 * 5 4 3 7 7 C 1.38239 * 120.11442 * 0.25504 * 6 5 4 8 8 C 1.50702 * 119.97426 * 179.70468 * 7 6 5 9 9 H 1.08996 * 110.64093 * 18.31084 * 8 7 6 10 10 C 1.55151 * 110.72354 * 141.45490 * 8 7 6 11 11 C 1.54904 * 101.58419 * 153.86375 * 10 8 7 12 12 N 1.47427 * 104.83468 * 322.99069 * 11 10 8 13 13 C 1.36933 * 125.65078 * 204.09464 * 12 11 10 14 14 H 1.08001 * 119.99976 * 180.02562 * 13 12 11 15 15 C 1.38812 * 120.00165 * 0.02562 * 13 12 11 16 16 N 1.31623 * 119.99998 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00276 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.46777 * 59.99982 * 17 15 13 19 19 H 1.48497 * 109.47188 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46966 * 300.00457 * 17 15 13 21 21 C 1.47024 * 108.69723 * 24.12474 * 12 11 10 22 22 C 1.52996 * 109.88464 * 239.52167 * 21 12 11 23 23 C 1.53003 * 109.87799 * 118.36212 * 21 12 11 24 24 C 1.38168 * 120.05405 * 359.44650 * 7 6 5 25 25 H 1.09001 * 109.46793 * 59.99511 * 1 2 3 26 26 H 1.08997 * 109.47600 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46710 * 300.00414 * 1 2 3 28 28 H 1.07994 * 120.02849 * 359.97438 * 4 3 2 29 29 H 1.07998 * 119.97581 * 180.02562 * 5 4 3 30 30 H 1.08005 * 119.94222 * 179.97438 * 6 5 4 31 31 H 1.09005 * 111.00609 * 271.94348 * 10 8 7 32 32 H 1.09010 * 111.00414 * 35.78972 * 10 8 7 33 33 H 1.08996 * 110.36891 * 81.83174 * 11 10 8 34 34 H 1.09006 * 110.37035 * 204.14946 * 11 10 8 35 35 H 0.96998 * 119.99843 * 180.02562 * 16 15 13 36 36 H 1.08998 * 109.47823 * 175.28472 * 22 21 12 37 37 H 1.09006 * 109.47519 * 295.28722 * 22 21 12 38 38 H 1.09007 * 109.47123 * 55.28475 * 22 21 12 39 39 H 1.09000 * 109.47264 * 302.18968 * 23 21 12 40 40 H 1.08995 * 109.47556 * 62.18806 * 23 21 12 41 41 H 1.08997 * 109.47031 * 182.19257 * 23 21 12 42 42 H 1.08007 * 120.02793 * 180.25205 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3021 3.6756 -0.0016 7 6 4.0561 2.5170 -0.0069 8 6 5.5609 2.5980 -0.0142 9 1 5.8941 3.5851 0.3060 10 6 6.1746 1.4929 0.8855 11 6 7.5680 1.3015 0.2364 12 7 7.3338 1.4516 -1.2114 13 6 8.1179 0.9292 -2.2050 14 1 7.8604 1.0966 -3.2405 15 6 9.2438 0.1845 -1.8816 16 7 9.5574 -0.0200 -0.6197 17 14 10.3139 -0.5275 -3.2371 18 1 10.8428 0.5744 -4.0805 19 1 11.4453 -1.2760 -2.6329 20 1 9.5039 -1.4475 -4.0754 21 6 6.1193 2.2556 -1.4116 22 6 5.0862 1.4499 -2.2017 23 6 6.4654 3.5425 -2.1633 24 6 3.4312 1.2847 -0.0002 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2130 2.3204 -0.0014 29 1 1.3342 4.5114 -0.0011 30 1 3.7925 4.6379 -0.0024 31 1 6.2673 1.8350 1.9163 32 1 5.5889 0.5750 0.8313 33 1 8.2595 2.0662 0.5901 34 1 7.9559 0.3070 0.4569 35 1 10.3444 -0.5401 -0.3937 36 1 4.1595 2.0191 -2.2741 37 1 5.4691 1.2504 -3.2026 38 1 4.8939 0.5060 -1.6914 39 1 7.2158 4.1001 -1.6028 40 1 6.8589 3.2932 -3.1486 41 1 5.5680 4.1512 -2.2738 42 1 4.0207 0.3797 -0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880285249.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:32 Heat of formation + Delta-G solvation = 15.535448 kcal Electronic energy + Delta-G solvation = -22182.253932 eV Core-core repulsion = 19128.453831 eV Total energy + Delta-G solvation = -3053.800101 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.28122 -38.71007 -36.73701 -33.07853 -31.43611 -30.80624 -30.25527 -28.31428 -27.30251 -26.32526 -24.91177 -23.71119 -22.33616 -21.29938 -19.97339 -18.61451 -17.30609 -16.35000 -16.01998 -15.80584 -15.69542 -14.96714 -14.35443 -14.09425 -13.62092 -13.46610 -13.37719 -12.84408 -12.46465 -12.37929 -12.03553 -11.90807 -11.66379 -11.48901 -11.33701 -11.11861 -10.93319 -10.88505 -10.74430 -10.62111 -10.34980 -10.08060 -9.96580 -9.78271 -9.48049 -9.39249 -8.56931 -8.39964 -8.00824 -6.77470 -5.57096 -2.97903 1.53505 1.65238 3.33974 3.44859 3.49255 3.50179 3.95736 4.54364 4.86136 4.94818 5.06066 5.07556 5.23674 5.36919 5.40051 5.47386 5.53040 5.55767 5.73104 5.80199 5.83253 5.89950 6.14517 6.21194 6.28372 6.39347 6.43387 6.51916 6.53773 6.56422 6.63867 6.72186 6.79760 6.84766 6.96647 6.98447 7.11711 7.29610 7.53652 7.60560 7.73323 7.93924 8.44649 9.30721 9.92379 10.57621 11.46573 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025260 B = 0.005063 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.225476 B = 5528.464092 C = 5864.383537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.318 6.318 3 C 0.121 3.879 4 C -0.222 4.222 5 C -0.084 4.084 6 C -0.158 4.158 7 C -0.009 4.009 8 C -0.059 4.059 9 H 0.080 0.920 10 C -0.140 4.140 11 C 0.151 3.849 12 N -0.590 5.590 13 C -0.211 4.211 14 H 0.075 0.925 15 C -0.013 4.013 16 N -0.924 5.924 17 Si 0.910 3.090 18 H -0.287 1.287 19 H -0.291 1.291 20 H -0.286 1.286 21 C 0.192 3.808 22 C -0.147 4.147 23 C -0.147 4.147 24 C -0.138 4.138 25 H 0.052 0.948 26 H 0.096 0.904 27 H 0.052 0.948 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.011 0.989 34 H 0.107 0.893 35 H 0.251 0.749 36 H 0.040 0.960 37 H 0.045 0.955 38 H 0.055 0.945 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.037 0.963 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.638 5.073 2.744 17.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.077 3.923 4 C -0.240 4.240 5 C -0.102 4.102 6 C -0.177 4.177 7 C -0.009 4.009 8 C -0.078 4.078 9 H 0.099 0.901 10 C -0.179 4.179 11 C 0.027 3.973 12 N -0.313 5.313 13 C -0.340 4.340 14 H 0.093 0.907 15 C -0.208 4.208 16 N -0.573 5.573 17 Si 0.741 3.259 18 H -0.214 1.214 19 H -0.217 1.217 20 H -0.213 1.213 21 C 0.102 3.898 22 C -0.206 4.206 23 C -0.206 4.206 24 C -0.157 4.157 25 H 0.071 0.929 26 H 0.114 0.886 27 H 0.070 0.930 28 H 0.138 0.862 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.029 0.971 34 H 0.125 0.875 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -16.329 4.732 2.721 17.217 hybrid contribution 0.268 -0.103 -0.783 0.835 sum -16.060 4.628 1.937 16.826 Atomic orbital electron populations 1.22986 0.78993 1.03545 1.01026 1.86090 1.20869 1.27260 1.88959 1.19009 0.92313 0.83886 0.97122 1.21088 0.99434 0.92554 1.10967 1.20809 0.94527 0.96618 0.98294 1.20956 0.93516 0.98098 1.05081 1.19626 0.95621 0.91798 0.93867 1.21294 0.88871 1.00068 0.97556 0.90138 1.23204 1.00217 0.97034 0.97435 1.21942 0.89837 1.03120 0.82427 1.44553 1.25407 1.59030 1.02329 1.18958 1.02993 1.24917 0.87110 0.90712 1.24733 0.98574 1.01149 0.96298 1.69785 1.27794 1.44961 1.14732 0.86211 0.80006 0.78816 0.80837 1.21377 1.21687 1.21310 1.20189 0.87893 0.90699 0.90975 1.22369 0.97643 1.00152 1.00402 1.22197 0.99451 0.97966 1.01013 1.20495 0.90827 0.99063 1.05290 0.92914 0.88560 0.92960 0.86168 0.86333 0.86171 0.92371 0.91645 0.97086 0.87538 0.93844 0.94112 0.93545 0.92633 0.93220 0.92980 0.94362 0.84596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.48 10.50 -19.42 -0.20 -4.69 16 3 C 0.12 1.80 6.69 -39.22 -0.26 1.54 16 4 C -0.22 -2.81 9.04 -39.43 -0.36 -3.17 16 5 C -0.08 -1.04 10.04 -39.60 -0.40 -1.44 16 6 C -0.16 -2.21 9.68 -39.56 -0.38 -2.59 16 7 C -0.01 -0.14 3.62 -104.65 -0.38 -0.52 16 8 C -0.06 -1.06 2.65 -89.94 -0.24 -1.30 16 9 H 0.08 1.39 7.76 -51.93 -0.40 0.98 16 10 C -0.14 -2.73 6.38 -24.59 -0.16 -2.88 16 11 C 0.15 3.67 5.89 -2.53 -0.01 3.66 16 12 N -0.59 -14.71 2.88 -155.37 -0.45 -15.16 16 13 C -0.21 -5.80 9.48 -15.06 -0.14 -5.94 16 14 H 0.08 2.01 7.81 -52.49 -0.41 1.60 16 15 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 16 N -0.92 -26.90 10.09 55.49 0.56 -26.34 16 17 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 C 0.19 3.93 0.91 -130.84 -0.12 3.81 16 22 C -0.15 -2.89 7.04 37.16 0.26 -2.63 16 23 C -0.15 -2.82 8.45 37.16 0.31 -2.51 16 24 C -0.14 -2.27 6.73 -39.43 -0.27 -2.54 16 25 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 26 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 28 H 0.12 1.21 6.30 -52.49 -0.33 0.88 16 29 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.12 1.49 8.05 -52.48 -0.42 1.07 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.06 1.27 5.92 -51.92 -0.31 0.96 16 33 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.11 2.91 5.87 -51.93 -0.30 2.60 16 35 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.04 0.73 6.60 -51.93 -0.34 0.39 16 37 H 0.05 0.95 8.06 -51.93 -0.42 0.53 16 38 H 0.05 1.14 6.25 -51.92 -0.32 0.81 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.05 1.04 8.04 -51.93 -0.42 0.63 16 41 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.14 2.42 5.30 -52.48 -0.28 2.14 16 LS Contribution 324.61 15.07 4.89 4.89 Total: -1.00 -30.07 324.61 -7.89 -37.97 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.43 Total: 1.77 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -1.24 Total: -15.70 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.11 Total: -41.50 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.20 Total: -4.69 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.07 -7.89 -37.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880285249.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.502 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds