Wall clock time and date at job start Mon Mar 30 2020 01:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 112.90725 * 2 1 4 4 C 1.54053 * 113.69868 * 228.67269 * 2 1 3 5 5 H 1.09005 * 113.60880 * 334.59977 * 4 2 1 6 6 N 1.46901 * 113.62216 * 105.50138 * 4 2 1 7 7 C 1.46893 * 111.00287 * 201.99993 * 6 4 2 8 8 C 1.50701 * 109.47198 * 180.02562 * 7 6 4 9 9 H 1.07998 * 119.99835 * 359.97438 * 8 7 6 10 10 C 1.37871 * 119.99938 * 180.02562 * 8 7 6 11 11 N 1.31516 * 120.00227 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 119.99988 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.46862 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47258 * 119.99959 * 12 10 8 15 15 H 1.48504 * 109.46948 * 239.99602 * 12 10 8 16 16 C 1.53773 * 87.07787 * 220.05144 * 4 2 1 17 17 C 1.53780 * 87.08511 * 25.42898 * 16 4 2 18 18 H 1.09004 * 113.61668 * 219.93929 * 17 16 4 19 19 O 1.42897 * 113.61735 * 89.10982 * 17 16 4 20 20 C 1.35904 * 116.99512 * 87.21007 * 19 17 16 21 21 C 1.38734 * 120.05426 * 174.99666 * 20 19 17 22 22 C 1.38145 * 119.94292 * 179.74445 * 21 20 19 23 23 C 1.38271 * 120.05612 * 0.25372 * 22 21 20 24 24 C 1.38268 * 120.11062 * 359.97438 * 23 22 21 25 25 C 1.38142 * 120.05303 * 0.02562 * 24 23 22 26 26 H 1.08997 * 109.47342 * 308.25999 * 1 2 3 27 27 H 1.09008 * 109.47238 * 68.25433 * 1 2 3 28 28 H 1.08997 * 109.46893 * 188.25526 * 1 2 3 29 29 H 1.08996 * 109.47221 * 171.75154 * 3 2 1 30 30 H 1.09006 * 109.47119 * 291.74222 * 3 2 1 31 31 H 1.08994 * 109.47385 * 51.74274 * 3 2 1 32 32 H 1.00897 * 110.99576 * 78.04413 * 6 4 2 33 33 H 1.08994 * 109.47443 * 300.00672 * 7 6 4 34 34 H 1.09005 * 109.46787 * 60.00260 * 7 6 4 35 35 H 0.97004 * 119.99740 * 180.02562 * 11 10 8 36 36 H 1.09004 * 113.61749 * 270.87691 * 16 4 2 37 37 H 1.09006 * 113.69058 * 139.98936 * 16 4 2 38 38 H 1.07999 * 120.02842 * 0.02562 * 21 20 19 39 39 H 1.07997 * 119.97275 * 180.27172 * 22 21 20 40 40 H 1.07997 * 119.94210 * 179.97438 * 23 22 21 41 41 H 1.08000 * 119.96657 * 180.02562 * 24 23 22 42 42 H 1.08003 * 120.02392 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1491 -0.9315 -1.0593 5 1 1.4984 -1.7567 -1.3489 6 7 2.7151 -0.2180 -2.2120 7 6 2.8082 -1.0998 -3.3831 8 6 3.3924 -0.3349 -4.5427 9 1 3.6667 0.7026 -4.4218 10 6 3.5757 -0.9594 -5.7581 11 7 3.2413 -2.2228 -5.9054 12 14 4.3006 -0.0115 -7.1953 13 1 4.5907 1.3823 -6.7730 14 1 5.5575 -0.6671 -7.6373 15 1 3.3291 0.0040 -8.3184 16 6 3.1940 -1.3142 0.0020 17 6 2.1460 -0.9290 1.0594 18 1 2.5637 -0.3988 1.9153 19 8 1.2918 -2.0099 1.4391 20 6 1.7259 -2.8156 2.4437 21 6 0.9035 -3.8198 2.9336 22 6 1.3491 -4.6409 3.9512 23 6 2.6116 -4.4593 4.4851 24 6 3.4314 -3.4562 4.0018 25 6 2.9904 -2.6325 2.9843 26 1 -0.3634 0.6363 0.8069 27 1 -0.3634 0.3808 -0.9546 28 1 -0.3633 -1.0170 0.1476 29 1 3.2037 1.3482 0.1474 30 1 1.9163 1.8923 -0.9546 31 1 1.6808 1.9918 0.8069 32 1 3.6148 0.1785 -1.9854 33 1 3.4497 -1.9491 -3.1483 34 1 1.8134 -1.4582 -3.6480 35 1 3.3707 -2.6622 -6.7605 36 1 4.0725 -0.6688 0.0025 37 1 3.4477 -2.3743 0.0046 38 1 -0.0825 -3.9624 2.5166 39 1 0.7110 -5.4256 4.3299 40 1 2.9579 -5.1020 5.2808 41 1 4.4172 -3.3167 4.4202 42 1 3.6312 -1.8493 2.6068 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894084201.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:45 Heat of formation + Delta-G solvation = 3.719218 kcal Electronic energy + Delta-G solvation = -21171.345171 eV Core-core repulsion = 18117.032680 eV Total energy + Delta-G solvation = -3054.312491 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.77497 -38.99975 -36.63618 -33.93714 -31.91403 -31.15205 -30.13192 -29.70386 -27.12414 -26.62509 -24.07850 -22.76157 -22.35667 -21.78596 -21.23755 -18.61933 -17.84309 -16.40046 -15.98172 -15.74952 -15.32830 -14.92974 -14.71876 -14.35803 -14.02254 -13.87933 -13.50534 -13.45351 -12.83431 -12.47283 -12.29972 -12.15779 -11.96823 -11.91862 -11.64642 -11.56061 -11.30203 -11.04240 -10.94185 -10.85632 -10.60515 -10.54690 -10.11650 -9.89291 -9.64654 -9.10399 -9.06182 -8.48553 -8.21717 -7.24927 -6.02832 -4.05003 1.24419 1.37456 3.13563 3.30730 3.38068 3.42771 3.70748 4.42818 4.55353 4.65865 4.77161 4.85512 4.92932 5.03194 5.04655 5.24587 5.28472 5.33096 5.47325 5.48802 5.60804 5.69766 5.76602 5.83797 5.90391 5.95823 6.06155 6.16664 6.24149 6.24932 6.31798 6.36633 6.42394 6.46329 6.62295 6.66628 6.79947 7.27023 7.44331 7.49180 7.79143 8.13517 8.40166 8.61227 9.04730 9.60060 11.08155 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024681 B = 0.003699 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.209064 B = 7568.561831 C = 8053.596534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.063 4.063 3 C -0.117 4.117 4 C 0.089 3.911 5 H 0.094 0.906 6 N -0.674 5.674 7 C 0.194 3.806 8 C -0.514 4.514 9 H 0.062 0.938 10 C 0.055 3.945 11 N -0.897 5.897 12 Si 0.898 3.102 13 H -0.272 1.272 14 H -0.285 1.285 15 H -0.284 1.284 16 C -0.194 4.194 17 C 0.065 3.935 18 H 0.077 0.923 19 O -0.288 6.288 20 C 0.138 3.862 21 C -0.157 4.157 22 C -0.083 4.083 23 C -0.166 4.166 24 C -0.082 4.082 25 C -0.206 4.206 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.330 0.670 33 H -0.014 1.014 34 H 0.027 0.973 35 H 0.261 0.739 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.271 -0.430 20.449 20.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.065 4.065 3 C -0.175 4.175 4 C -0.023 4.023 5 H 0.112 0.888 6 N -0.302 5.302 7 C 0.067 3.933 8 C -0.552 4.552 9 H 0.080 0.920 10 C -0.146 4.146 11 N -0.537 5.537 12 Si 0.726 3.274 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.210 1.210 16 C -0.234 4.234 17 C 0.008 3.992 18 H 0.095 0.905 19 O -0.201 6.201 20 C 0.092 3.908 21 C -0.175 4.175 22 C -0.101 4.101 23 C -0.185 4.185 24 C -0.100 4.100 25 C -0.225 4.225 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.148 0.852 33 H 0.004 0.996 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.110 0.890 37 H 0.089 0.911 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.057 -0.296 19.954 20.189 hybrid contribution 1.438 -0.266 -0.522 1.553 sum -1.619 -0.562 19.432 19.508 Atomic orbital electron populations 1.21556 0.93734 1.01924 1.01473 1.22230 0.96263 0.94685 0.93288 1.21424 0.99736 0.93580 1.02712 1.23028 0.95256 0.94699 0.89307 0.88767 1.60500 1.29620 1.35832 1.04234 1.19575 0.96557 0.90636 0.86506 1.21225 1.41008 0.97725 0.95274 0.91954 1.24993 0.95807 0.94923 0.98874 1.69979 1.48320 1.10500 1.24866 0.86446 0.78652 0.80035 0.82291 1.19669 1.21134 1.21009 1.24305 0.98246 1.02361 0.98452 1.23446 0.92372 0.87321 0.96075 0.90536 1.86077 1.45559 1.39639 1.48848 1.19104 0.92583 0.91135 0.87976 1.20470 1.00568 0.96772 0.99738 1.20939 0.95920 0.98010 0.95241 1.21020 0.95066 1.00099 1.02268 1.20953 0.99259 0.94387 0.95430 1.21344 0.96375 1.03631 1.01153 0.93368 0.91939 0.92022 0.92921 0.89983 0.93353 0.85236 0.99615 0.95441 0.92985 0.89021 0.91116 0.85290 0.85604 0.86200 0.86041 0.85377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 9.00 37.15 0.33 -1.50 16 2 C -0.06 -0.92 1.35 -153.55 -0.21 -1.13 16 3 C -0.12 -1.54 8.31 37.16 0.31 -1.23 16 4 C 0.09 1.58 3.55 -66.76 -0.24 1.34 16 5 H 0.09 1.86 7.86 -51.93 -0.41 1.46 16 6 N -0.67 -14.00 5.65 -106.99 -0.60 -14.61 16 7 C 0.19 5.07 5.30 -4.98 -0.03 5.04 16 8 C -0.51 -14.50 9.32 -34.44 -0.32 -14.82 16 9 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 10 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 11 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 12 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 13 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 C -0.19 -2.93 6.74 -25.92 -0.17 -3.11 16 17 C 0.06 0.89 2.68 -25.92 -0.07 0.82 16 18 H 0.08 0.93 7.00 -51.93 -0.36 0.57 16 19 O -0.29 -4.23 8.65 -19.44 -0.17 -4.39 16 20 C 0.14 1.86 6.68 -39.22 -0.26 1.60 16 21 C -0.16 -1.89 9.99 -39.43 -0.39 -2.28 16 22 C -0.08 -0.85 10.04 -39.60 -0.40 -1.24 16 23 C -0.17 -1.64 10.04 -39.56 -0.40 -2.04 16 24 C -0.08 -0.87 10.04 -39.61 -0.40 -1.26 16 25 C -0.21 -2.51 8.95 -39.43 -0.35 -2.87 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 28 H 0.06 0.90 7.07 -51.93 -0.37 0.53 16 29 H 0.05 0.65 7.32 -51.93 -0.38 0.27 16 30 H 0.08 1.20 7.89 -51.93 -0.41 0.79 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.33 6.51 8.04 -39.29 -0.32 6.20 16 33 H -0.01 -0.39 8.14 -51.93 -0.42 -0.81 16 34 H 0.03 0.78 8.13 -51.93 -0.42 0.36 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.09 1.28 7.32 -51.93 -0.38 0.90 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 42 H 0.13 1.47 6.02 -52.48 -0.32 1.15 16 LS Contribution 341.62 15.07 5.15 5.15 Total: -1.00 -30.30 341.62 -9.31 -39.61 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -6.71 Total: 5.00 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: -2.69 Total: -21.21 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.13 Total: -40.84 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -0.17 Total: -4.39 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.30 -9.31 -39.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894084201.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.329 kcal (2) G-P(sol) polarization free energy of solvation -30.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds