Wall clock time and date at job start Mon Mar 30 2020 01:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 112.90725 * 2 1 4 4 C 1.54053 * 113.69868 * 228.67269 * 2 1 3 5 5 H 1.09005 * 113.60880 * 334.59977 * 4 2 1 6 6 N 1.46901 * 113.62216 * 105.50138 * 4 2 1 7 7 C 1.46893 * 111.00287 * 201.99993 * 6 4 2 8 8 C 1.50701 * 109.47198 * 180.02562 * 7 6 4 9 9 H 1.07998 * 119.99835 * 359.97438 * 8 7 6 10 10 C 1.37871 * 119.99938 * 180.02562 * 8 7 6 11 11 N 1.31516 * 120.00227 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 119.99988 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.46862 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47258 * 119.99959 * 12 10 8 15 15 H 1.48504 * 109.46948 * 239.99602 * 12 10 8 16 16 C 1.53773 * 87.07787 * 220.05144 * 4 2 1 17 17 C 1.53780 * 87.08511 * 25.42898 * 16 4 2 18 18 H 1.09004 * 113.61668 * 219.93929 * 17 16 4 19 19 O 1.42897 * 113.61735 * 89.10982 * 17 16 4 20 20 C 1.35904 * 116.99512 * 87.21007 * 19 17 16 21 21 C 1.38734 * 120.05426 * 174.99666 * 20 19 17 22 22 C 1.38145 * 119.94292 * 179.74445 * 21 20 19 23 23 C 1.38271 * 120.05612 * 0.25372 * 22 21 20 24 24 C 1.38268 * 120.11062 * 359.97438 * 23 22 21 25 25 C 1.38142 * 120.05303 * 0.02562 * 24 23 22 26 26 H 1.08997 * 109.47342 * 308.25999 * 1 2 3 27 27 H 1.09008 * 109.47238 * 68.25433 * 1 2 3 28 28 H 1.08997 * 109.46893 * 188.25526 * 1 2 3 29 29 H 1.08996 * 109.47221 * 171.75154 * 3 2 1 30 30 H 1.09006 * 109.47119 * 291.74222 * 3 2 1 31 31 H 1.08994 * 109.47385 * 51.74274 * 3 2 1 32 32 H 1.00897 * 110.99576 * 78.04413 * 6 4 2 33 33 H 1.08994 * 109.47443 * 300.00672 * 7 6 4 34 34 H 1.09005 * 109.46787 * 60.00260 * 7 6 4 35 35 H 0.97004 * 119.99740 * 180.02562 * 11 10 8 36 36 H 1.09004 * 113.61749 * 270.87691 * 16 4 2 37 37 H 1.09006 * 113.69058 * 139.98936 * 16 4 2 38 38 H 1.07999 * 120.02842 * 0.02562 * 21 20 19 39 39 H 1.07997 * 119.97275 * 180.27172 * 22 21 20 40 40 H 1.07997 * 119.94210 * 179.97438 * 23 22 21 41 41 H 1.08000 * 119.96657 * 180.02562 * 24 23 22 42 42 H 1.08003 * 120.02392 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1491 -0.9315 -1.0593 5 1 1.4984 -1.7567 -1.3489 6 7 2.7151 -0.2180 -2.2120 7 6 2.8082 -1.0998 -3.3831 8 6 3.3924 -0.3349 -4.5427 9 1 3.6667 0.7026 -4.4218 10 6 3.5757 -0.9594 -5.7581 11 7 3.2413 -2.2228 -5.9054 12 14 4.3006 -0.0115 -7.1953 13 1 4.5907 1.3823 -6.7730 14 1 5.5575 -0.6671 -7.6373 15 1 3.3291 0.0040 -8.3184 16 6 3.1940 -1.3142 0.0020 17 6 2.1460 -0.9290 1.0594 18 1 2.5637 -0.3988 1.9153 19 8 1.2918 -2.0099 1.4391 20 6 1.7259 -2.8156 2.4437 21 6 0.9035 -3.8198 2.9336 22 6 1.3491 -4.6409 3.9512 23 6 2.6116 -4.4593 4.4851 24 6 3.4314 -3.4562 4.0018 25 6 2.9904 -2.6325 2.9843 26 1 -0.3634 0.6363 0.8069 27 1 -0.3634 0.3808 -0.9546 28 1 -0.3633 -1.0170 0.1476 29 1 3.2037 1.3482 0.1474 30 1 1.9163 1.8923 -0.9546 31 1 1.6808 1.9918 0.8069 32 1 3.6148 0.1785 -1.9854 33 1 3.4497 -1.9491 -3.1483 34 1 1.8134 -1.4582 -3.6480 35 1 3.3707 -2.6622 -6.7605 36 1 4.0725 -0.6688 0.0025 37 1 3.4477 -2.3743 0.0046 38 1 -0.0825 -3.9624 2.5166 39 1 0.7110 -5.4256 4.3299 40 1 2.9579 -5.1020 5.2808 41 1 4.4172 -3.3167 4.4202 42 1 3.6312 -1.8493 2.6068 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894084201.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:44 Heat of formation + Delta-G solvation = -13.714476 kcal Electronic energy + Delta-G solvation = -21172.101153 eV Core-core repulsion = 18117.032680 eV Total energy + Delta-G solvation = -3055.068473 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.90122 -40.02247 -37.71858 -35.83808 -33.87271 -32.02327 -31.28451 -30.67372 -28.59902 -28.22222 -25.45845 -23.94531 -23.66240 -23.04333 -22.63840 -19.77451 -19.05586 -18.26295 -17.01654 -16.80503 -16.74300 -16.48269 -15.93966 -15.78507 -15.13550 -15.09692 -14.93325 -14.34435 -14.28019 -14.01176 -13.73733 -13.43637 -13.26886 -13.14077 -12.95972 -12.74129 -12.73381 -12.59514 -12.43552 -12.16589 -12.01308 -11.88634 -11.75051 -11.44436 -11.07268 -10.79517 -10.67337 -9.93818 -9.14388 -9.01129 -8.22882 -6.34698 0.40698 0.50782 1.40619 1.41611 1.55532 2.12392 2.39497 2.85663 3.10361 3.38764 3.41853 3.53619 3.81803 3.94044 4.01993 4.12547 4.20408 4.30477 4.34756 4.50951 4.53129 4.56723 4.66904 4.72504 4.80183 4.90266 4.94505 5.03268 5.09821 5.10013 5.16159 5.22890 5.29570 5.37773 5.46723 5.52006 5.56784 5.60884 5.62906 5.91756 6.01893 6.46471 6.51186 6.73406 6.91352 7.36847 8.88952 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024681 B = 0.003699 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.209064 B = 7568.561831 C = 8053.596534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.055 4.055 3 C -0.114 4.114 4 C 0.071 3.929 5 H 0.061 0.939 6 N -0.665 5.665 7 C 0.211 3.789 8 C -0.532 4.532 9 H 0.068 0.932 10 C -0.002 4.002 11 N -0.937 5.937 12 Si 0.975 3.025 13 H -0.259 1.259 14 H -0.278 1.278 15 H -0.280 1.280 16 C -0.185 4.185 17 C 0.080 3.920 18 H 0.103 0.897 19 O -0.308 6.308 20 C 0.108 3.892 21 C -0.174 4.174 22 C -0.084 4.084 23 C -0.165 4.165 24 C -0.087 4.087 25 C -0.218 4.218 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.338 0.662 33 H -0.044 1.044 34 H -0.008 1.008 35 H 0.264 0.736 36 H 0.109 0.891 37 H 0.054 0.946 38 H 0.129 0.871 39 H 0.153 0.847 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.188 0.673 22.249 22.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.056 4.056 3 C -0.171 4.171 4 C -0.041 4.041 5 H 0.079 0.921 6 N -0.294 5.294 7 C 0.083 3.917 8 C -0.570 4.570 9 H 0.086 0.914 10 C -0.199 4.199 11 N -0.577 5.577 12 Si 0.799 3.201 13 H -0.183 1.183 14 H -0.204 1.204 15 H -0.206 1.206 16 C -0.225 4.225 17 C 0.023 3.977 18 H 0.120 0.880 19 O -0.222 6.222 20 C 0.063 3.937 21 C -0.193 4.193 22 C -0.102 4.102 23 C -0.183 4.183 24 C -0.105 4.105 25 C -0.236 4.236 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.157 0.843 33 H -0.026 1.026 34 H 0.010 0.990 35 H 0.073 0.927 36 H 0.128 0.872 37 H 0.073 0.927 38 H 0.147 0.853 39 H 0.170 0.830 40 H 0.166 0.834 41 H 0.164 0.836 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.978 0.813 21.790 21.895 hybrid contribution 1.062 -0.722 -0.990 1.621 sum -0.916 0.091 20.800 20.821 Atomic orbital electron populations 1.21529 0.93575 1.01704 1.01643 1.22206 0.96466 0.95300 0.91656 1.21417 1.00572 0.92286 1.02834 1.23117 0.96431 0.95210 0.89318 0.92057 1.60403 1.30078 1.34990 1.03975 1.19169 0.93592 0.90364 0.88555 1.21586 1.41193 0.98095 0.96155 0.91383 1.26002 0.96007 0.95860 1.02072 1.70121 1.49354 1.12365 1.25858 0.85252 0.77798 0.78942 0.78094 1.18324 1.20357 1.20559 1.24234 0.98591 1.01784 0.97844 1.23290 0.91167 0.86978 0.96233 0.87964 1.86046 1.46081 1.40255 1.49781 1.19404 0.93786 0.91972 0.88540 1.20714 1.00804 0.97159 1.00635 1.21303 0.96588 0.97962 0.94319 1.21434 0.94622 0.99846 1.02354 1.21314 1.00436 0.93987 0.94792 1.21498 0.95961 1.04371 1.01806 0.90959 0.93238 0.93157 0.91825 0.91675 0.90691 0.84306 1.02634 0.98989 0.92700 0.87246 0.92667 0.85289 0.82980 0.83354 0.83645 0.84968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.60 9.00 71.98 0.65 -2.95 16 2 C -0.06 -1.58 1.35 -51.56 -0.07 -1.65 16 3 C -0.11 -2.77 8.31 71.98 0.60 -2.17 16 4 C 0.07 2.60 3.55 45.53 0.16 2.76 16 5 H 0.06 2.65 7.86 -2.38 -0.02 2.63 16 6 N -0.67 -28.58 5.65 -492.40 -2.78 -31.37 16 7 C 0.21 11.63 5.30 85.56 0.45 12.08 16 8 C -0.53 -30.66 9.32 25.60 0.24 -30.42 16 9 H 0.07 3.76 7.81 -2.91 -0.02 3.74 16 10 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 11 N -0.94 -57.85 13.29 21.45 0.28 -57.57 16 12 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 13 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 14 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 15 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 16 C -0.19 -5.63 6.74 31.12 0.21 -5.42 16 17 C 0.08 2.13 2.68 31.12 0.08 2.21 16 18 H 0.10 2.24 7.00 -2.38 -0.02 2.22 16 19 O -0.31 -9.13 8.65 -92.47 -0.80 -9.93 16 20 C 0.11 2.89 6.68 22.51 0.15 3.04 16 21 C -0.17 -4.15 9.99 22.37 0.22 -3.92 16 22 C -0.08 -1.55 10.04 22.26 0.22 -1.33 16 23 C -0.16 -2.81 10.04 22.28 0.22 -2.58 16 24 C -0.09 -1.64 10.04 22.25 0.22 -1.42 16 25 C -0.22 -5.03 8.95 22.36 0.20 -4.83 16 26 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.05 1.52 7.07 -2.39 -0.02 1.50 16 29 H 0.06 1.40 7.32 -2.39 -0.02 1.38 16 30 H 0.06 1.83 7.89 -2.38 -0.02 1.81 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.34 13.45 8.04 -89.70 -0.72 12.73 16 33 H -0.04 -2.63 8.14 -2.39 -0.02 -2.65 16 34 H -0.01 -0.49 8.13 -2.38 -0.02 -0.51 16 35 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 36 H 0.11 2.92 7.32 -2.38 -0.02 2.90 16 37 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.13 2.91 8.06 -2.91 -0.02 2.88 16 39 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 40 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 41 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 42 H 0.13 2.82 6.02 -2.91 -0.02 2.80 16 Total: -1.00 -67.73 341.62 3.03 -64.70 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 0.27 Total: 23.70 kcal Atomic # 6 Polarization: -40.26 SS G_CDS: 4.03 Total: -36.23 kcal Atomic # 7 Polarization: -86.44 SS G_CDS: -2.50 Total: -88.93 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -0.80 Total: -9.93 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -67.73 3.03 -64.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894084201.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.982 kcal (2) G-P(sol) polarization free energy of solvation -67.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds