Wall clock time and date at job start Mon Mar 30 2020 01:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 112.84814 * 2 1 4 4 C 1.53778 * 113.61474 * 131.19725 * 2 1 3 5 5 H 1.09001 * 113.61450 * 25.35019 * 4 2 1 6 6 N 1.46895 * 113.61586 * 254.52774 * 4 2 1 7 7 C 1.46899 * 110.99796 * 155.00105 * 6 4 2 8 8 C 1.50700 * 109.47097 * 180.02562 * 7 6 4 9 9 H 1.08000 * 120.00087 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00147 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99810 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00383 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46826 * 269.99882 * 12 10 8 14 14 H 1.48491 * 109.47388 * 149.99748 * 12 10 8 15 15 H 1.48505 * 109.46924 * 29.99747 * 12 10 8 16 16 C 1.53788 * 87.07737 * 139.98327 * 4 2 1 17 17 C 1.53779 * 113.61250 * 228.69918 * 2 1 3 18 18 H 1.08996 * 113.61624 * 334.56702 * 17 2 1 19 19 O 1.42900 * 113.61376 * 105.38677 * 17 2 1 20 20 C 1.35901 * 116.99936 * 202.12059 * 19 17 2 21 21 C 1.38730 * 120.05701 * 173.77530 * 20 19 17 22 22 C 1.38145 * 119.94453 * 179.70382 * 21 20 19 23 23 C 1.38266 * 120.05416 * 0.59581 * 22 21 20 24 24 C 1.38262 * 120.11232 * 359.68064 * 23 22 21 25 25 C 1.38144 * 120.05527 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.46805 * 288.79694 * 1 2 3 27 27 H 1.09000 * 109.46920 * 48.80270 * 1 2 3 28 28 H 1.08998 * 109.46714 * 168.80065 * 1 2 3 29 29 H 1.08997 * 109.47402 * 191.19571 * 3 2 1 30 30 H 1.08995 * 109.47379 * 311.20304 * 3 2 1 31 31 H 1.09003 * 109.46583 * 71.19817 * 3 2 1 32 32 H 1.00896 * 111.00468 * 278.95779 * 6 4 2 33 33 H 1.09005 * 109.47282 * 60.00540 * 7 6 4 34 34 H 1.09001 * 109.47261 * 300.00285 * 7 6 4 35 35 H 0.96994 * 120.00168 * 0.02562 * 11 10 8 36 36 H 1.09000 * 113.61526 * 89.12034 * 16 4 2 37 37 H 1.09004 * 113.61305 * 220.01897 * 16 4 2 38 38 H 1.08002 * 120.02528 * 359.97438 * 21 20 19 39 39 H 1.07998 * 119.97207 * 180.32068 * 22 21 20 40 40 H 1.08001 * 119.94363 * 179.70276 * 23 22 21 41 41 H 1.07997 * 119.97328 * 180.02562 * 24 23 22 42 42 H 1.08003 * 120.02990 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1242 1.4100 0.0000 4 6 2.1461 -0.9280 1.0602 5 1 1.4940 -1.7514 1.3516 6 7 2.7108 -0.2124 2.2121 7 6 2.7359 -1.0704 3.4042 8 6 3.3196 -0.3037 4.5628 9 1 3.6396 0.7189 4.4272 10 6 3.4453 -0.9076 5.7959 11 7 3.0552 -2.1527 5.9610 12 14 4.1682 0.0430 7.2322 13 1 5.6400 -0.1515 7.2638 14 1 3.5762 -0.4514 8.5012 15 1 3.8630 1.4876 7.0735 16 6 3.1924 -1.3135 0.0011 17 6 2.1460 -0.9300 -1.0585 18 1 1.4945 -1.7547 -1.3474 19 8 2.6936 -0.2359 -2.1812 20 6 2.8297 -0.9402 -3.3356 21 6 3.2320 -0.2983 -4.4978 22 6 3.3754 -1.0176 -5.6685 23 6 3.1066 -2.3738 -5.6853 24 6 2.7000 -3.0147 -4.5296 25 6 2.5609 -2.3011 -3.3550 26 1 -0.3633 0.3311 0.9729 27 1 -0.3633 0.6769 -0.7733 28 1 -0.3633 -1.0081 -0.1996 29 1 3.1942 1.3534 -0.1995 30 1 1.6415 2.0077 -0.7731 31 1 1.9600 1.8733 0.9729 32 1 3.6320 0.1414 2.0018 33 1 3.3474 -1.9506 3.2055 34 1 1.7204 -1.3814 3.6494 35 1 2.6794 -2.6462 5.2153 36 1 4.0712 -0.6686 0.0006 37 1 3.4445 -2.3740 0.0021 38 1 3.4370 0.7620 -4.4863 39 1 3.6936 -0.5194 -6.5723 40 1 3.2147 -2.9334 -6.6026 41 1 2.4910 -4.0742 -4.5452 42 1 2.2436 -2.8022 -2.4524 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894084202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:49 Heat of formation + Delta-G solvation = -0.269796 kcal Electronic energy + Delta-G solvation = -21081.761616 eV Core-core repulsion = 18027.276148 eV Total energy + Delta-G solvation = -3054.485468 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.75490 -39.13504 -36.77794 -34.25673 -31.98183 -31.20533 -30.25329 -29.75392 -27.23390 -26.17059 -24.07823 -22.69561 -22.45863 -22.04004 -21.31156 -18.46759 -18.32587 -16.77182 -16.21003 -15.85821 -15.31765 -14.94866 -14.57945 -14.40189 -13.85776 -13.75156 -13.63137 -13.48487 -13.14392 -12.89614 -12.36456 -12.14440 -11.94200 -11.82595 -11.80370 -11.61399 -11.45654 -11.05785 -11.03606 -10.65828 -10.62581 -10.47812 -10.17188 -10.04150 -9.93842 -9.17005 -8.63171 -8.43782 -8.25874 -7.40779 -6.39911 -4.09053 1.17488 1.31305 3.20488 3.43125 3.47406 3.63320 3.64298 4.48342 4.51416 4.60884 4.67344 4.73739 4.80339 4.85693 4.97249 5.17958 5.21949 5.35753 5.38028 5.43648 5.52395 5.54624 5.66315 5.75640 5.83817 5.92182 5.96999 6.07816 6.16425 6.19147 6.25392 6.27058 6.36210 6.39102 6.51987 6.64171 6.75370 6.90675 7.12575 7.44986 7.74914 8.12087 8.41398 8.55666 8.84661 9.62721 11.00010 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032659 B = 0.003351 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.151072 B = 8352.617341 C = 8563.380630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.064 4.064 3 C -0.111 4.111 4 C 0.080 3.920 5 H 0.092 0.908 6 N -0.662 5.662 7 C 0.184 3.816 8 C -0.596 4.596 9 H 0.056 0.944 10 C 0.015 3.985 11 N -0.914 5.914 12 Si 1.075 2.925 13 H -0.288 1.288 14 H -0.284 1.284 15 H -0.287 1.287 16 C -0.183 4.183 17 C 0.060 3.940 18 H 0.095 0.905 19 O -0.294 6.294 20 C 0.137 3.863 21 C -0.159 4.159 22 C -0.082 4.082 23 C -0.167 4.167 24 C -0.080 4.080 25 C -0.212 4.212 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.335 0.665 33 H -0.024 1.024 34 H 0.018 0.982 35 H 0.267 0.733 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.991 1.040 -21.650 21.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.065 4.065 3 C -0.168 4.168 4 C -0.032 4.032 5 H 0.110 0.890 6 N -0.291 5.291 7 C 0.057 3.943 8 C -0.634 4.634 9 H 0.075 0.925 10 C -0.189 4.189 11 N -0.551 5.551 12 Si 0.904 3.096 13 H -0.215 1.215 14 H -0.210 1.210 15 H -0.213 1.213 16 C -0.222 4.222 17 C 0.004 3.996 18 H 0.113 0.887 19 O -0.207 6.207 20 C 0.091 3.909 21 C -0.177 4.177 22 C -0.100 4.100 23 C -0.185 4.185 24 C -0.098 4.098 25 C -0.230 4.230 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.154 0.846 33 H -0.006 1.006 34 H 0.036 0.964 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.149 1.439 -19.775 19.944 hybrid contribution 0.276 -0.929 -1.899 2.133 sum -1.873 0.509 -21.675 21.761 Atomic orbital electron populations 1.21725 0.93968 1.01110 1.02372 1.22296 0.95279 0.96454 0.92505 1.21263 1.00092 0.93445 1.02009 1.22779 0.95779 0.94950 0.89670 0.89038 1.60386 1.28243 1.37655 1.02803 1.19701 0.95782 0.91174 0.87681 1.22026 1.44722 1.00789 0.95870 0.92530 1.25862 0.95857 0.96751 1.00441 1.70768 1.39379 1.09751 1.35158 0.83451 0.76126 0.74739 0.75328 1.21527 1.21016 1.21350 1.24262 0.99005 1.01871 0.97091 1.24311 0.96322 0.96210 0.82764 0.88707 1.86194 1.77621 1.39312 1.17574 1.19146 0.94565 0.90450 0.86714 1.20476 1.05900 1.00649 0.90697 1.20949 0.97830 0.94127 0.97140 1.21020 1.04112 0.94990 0.98417 1.20952 0.97097 0.99588 0.92202 1.21339 1.08010 0.93772 0.99910 0.91385 0.92827 0.93124 0.92772 0.93377 0.90780 0.84624 1.00631 0.96396 0.92292 0.88915 0.91435 0.85349 0.85620 0.86171 0.86006 0.85402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 9.19 37.16 0.34 -1.44 16 2 C -0.06 -0.93 1.35 -153.69 -0.21 -1.14 16 3 C -0.11 -1.63 7.82 37.16 0.29 -1.34 16 4 C 0.08 1.36 3.64 -66.90 -0.24 1.12 16 5 H 0.09 1.59 7.82 -51.93 -0.41 1.19 16 6 N -0.66 -13.77 5.53 -107.13 -0.59 -14.36 16 7 C 0.18 4.69 4.59 -4.98 -0.02 4.67 16 8 C -0.60 -16.93 9.32 -34.44 -0.32 -17.25 16 9 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 10 C 0.01 0.42 5.46 -17.82 -0.10 0.32 16 11 N -0.91 -27.91 13.65 55.43 0.76 -27.15 16 12 Si 1.08 25.40 29.90 -169.99 -5.08 20.31 16 13 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 16 C -0.18 -2.74 7.18 -25.91 -0.19 -2.93 16 17 C 0.06 0.82 3.04 -25.92 -0.08 0.74 16 18 H 0.10 1.17 5.86 -51.93 -0.30 0.86 16 19 O -0.29 -4.14 9.25 -19.43 -0.18 -4.32 16 20 C 0.14 1.77 6.68 -39.22 -0.26 1.51 16 21 C -0.16 -1.80 9.99 -39.43 -0.39 -2.20 16 22 C -0.08 -0.79 10.04 -39.61 -0.40 -1.19 16 23 C -0.17 -1.57 10.04 -39.56 -0.40 -1.97 16 24 C -0.08 -0.81 10.04 -39.61 -0.40 -1.21 16 25 C -0.21 -2.49 9.01 -39.43 -0.36 -2.84 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.61 7.94 -51.93 -0.41 0.19 16 29 H 0.05 0.81 7.20 -51.93 -0.37 0.43 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.19 7.77 -51.93 -0.40 0.79 16 32 H 0.34 6.85 8.11 -39.29 -0.32 6.53 16 33 H -0.02 -0.64 8.01 -51.93 -0.42 -1.06 16 34 H 0.02 0.49 8.00 -51.93 -0.42 0.07 16 35 H 0.27 8.10 7.22 -40.82 -0.29 7.81 16 36 H 0.09 1.44 7.34 -51.93 -0.38 1.06 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 41 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.13 1.42 5.95 -52.48 -0.31 1.11 16 LS Contribution 340.88 15.07 5.14 5.14 Total: -1.00 -30.68 340.88 -9.32 -39.99 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -6.63 Total: 5.52 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: -2.73 Total: -25.14 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 0.16 Total: -41.51 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: -0.18 Total: -4.32 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.08 Total: 20.31 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.68 -9.32 -39.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894084202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.724 kcal (2) G-P(sol) polarization free energy of solvation -30.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds