Wall clock time and date at job start Mon Mar 30 2020 01:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 112.84814 * 2 1 4 4 C 1.53778 * 113.61474 * 131.19725 * 2 1 3 5 5 H 1.09001 * 113.61450 * 25.35019 * 4 2 1 6 6 N 1.46895 * 113.61586 * 254.52774 * 4 2 1 7 7 C 1.46899 * 110.99796 * 155.00105 * 6 4 2 8 8 C 1.50700 * 109.47097 * 180.02562 * 7 6 4 9 9 H 1.08000 * 120.00087 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00147 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99810 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00383 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46826 * 269.99882 * 12 10 8 14 14 H 1.48491 * 109.47388 * 149.99748 * 12 10 8 15 15 H 1.48505 * 109.46924 * 29.99747 * 12 10 8 16 16 C 1.53788 * 87.07737 * 139.98327 * 4 2 1 17 17 C 1.53779 * 113.61250 * 228.69918 * 2 1 3 18 18 H 1.08996 * 113.61624 * 334.56702 * 17 2 1 19 19 O 1.42900 * 113.61376 * 105.38677 * 17 2 1 20 20 C 1.35901 * 116.99936 * 202.12059 * 19 17 2 21 21 C 1.38730 * 120.05701 * 173.77530 * 20 19 17 22 22 C 1.38145 * 119.94453 * 179.70382 * 21 20 19 23 23 C 1.38266 * 120.05416 * 0.59581 * 22 21 20 24 24 C 1.38262 * 120.11232 * 359.68064 * 23 22 21 25 25 C 1.38144 * 120.05527 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.46805 * 288.79694 * 1 2 3 27 27 H 1.09000 * 109.46920 * 48.80270 * 1 2 3 28 28 H 1.08998 * 109.46714 * 168.80065 * 1 2 3 29 29 H 1.08997 * 109.47402 * 191.19571 * 3 2 1 30 30 H 1.08995 * 109.47379 * 311.20304 * 3 2 1 31 31 H 1.09003 * 109.46583 * 71.19817 * 3 2 1 32 32 H 1.00896 * 111.00468 * 278.95779 * 6 4 2 33 33 H 1.09005 * 109.47282 * 60.00540 * 7 6 4 34 34 H 1.09001 * 109.47261 * 300.00285 * 7 6 4 35 35 H 0.96994 * 120.00168 * 0.02562 * 11 10 8 36 36 H 1.09000 * 113.61526 * 89.12034 * 16 4 2 37 37 H 1.09004 * 113.61305 * 220.01897 * 16 4 2 38 38 H 1.08002 * 120.02528 * 359.97438 * 21 20 19 39 39 H 1.07998 * 119.97207 * 180.32068 * 22 21 20 40 40 H 1.08001 * 119.94363 * 179.70276 * 23 22 21 41 41 H 1.07997 * 119.97328 * 180.02562 * 24 23 22 42 42 H 1.08003 * 120.02990 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1242 1.4100 0.0000 4 6 2.1461 -0.9280 1.0602 5 1 1.4940 -1.7514 1.3516 6 7 2.7108 -0.2124 2.2121 7 6 2.7359 -1.0704 3.4042 8 6 3.3196 -0.3037 4.5628 9 1 3.6396 0.7189 4.4272 10 6 3.4453 -0.9076 5.7959 11 7 3.0552 -2.1527 5.9610 12 14 4.1682 0.0430 7.2322 13 1 5.6400 -0.1515 7.2638 14 1 3.5762 -0.4514 8.5012 15 1 3.8630 1.4876 7.0735 16 6 3.1924 -1.3135 0.0011 17 6 2.1460 -0.9300 -1.0585 18 1 1.4945 -1.7547 -1.3474 19 8 2.6936 -0.2359 -2.1812 20 6 2.8297 -0.9402 -3.3356 21 6 3.2320 -0.2983 -4.4978 22 6 3.3754 -1.0176 -5.6685 23 6 3.1066 -2.3738 -5.6853 24 6 2.7000 -3.0147 -4.5296 25 6 2.5609 -2.3011 -3.3550 26 1 -0.3633 0.3311 0.9729 27 1 -0.3633 0.6769 -0.7733 28 1 -0.3633 -1.0081 -0.1996 29 1 3.1942 1.3534 -0.1995 30 1 1.6415 2.0077 -0.7731 31 1 1.9600 1.8733 0.9729 32 1 3.6320 0.1414 2.0018 33 1 3.3474 -1.9506 3.2055 34 1 1.7204 -1.3814 3.6494 35 1 2.6794 -2.6462 5.2153 36 1 4.0712 -0.6686 0.0006 37 1 3.4445 -2.3740 0.0021 38 1 3.4370 0.7620 -4.4863 39 1 3.6936 -0.5194 -6.5723 40 1 3.2147 -2.9334 -6.6026 41 1 2.4910 -4.0742 -4.5452 42 1 2.2436 -2.8022 -2.4524 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894084202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:48 Heat of formation + Delta-G solvation = -17.669394 kcal Electronic energy + Delta-G solvation = -21082.516119 eV Core-core repulsion = 18027.276148 eV Total energy + Delta-G solvation = -3055.239971 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.86028 -40.13297 -37.81239 -36.17514 -33.88869 -32.02701 -31.39965 -30.66785 -28.48031 -28.00543 -25.44237 -24.10489 -23.61822 -23.38102 -22.45969 -19.80313 -19.31599 -18.76092 -17.16683 -16.75006 -16.45636 -16.27890 -15.85396 -15.70384 -15.51219 -15.16458 -14.94084 -14.44262 -14.34674 -14.08646 -13.98524 -13.49919 -13.24150 -13.17834 -13.03185 -12.79682 -12.66845 -12.52216 -12.45428 -12.11342 -11.99749 -11.92461 -11.61673 -11.45753 -11.09944 -10.69381 -10.62776 -9.95675 -9.19592 -9.09523 -8.71559 -6.42496 0.38815 0.49456 1.52915 1.62117 1.80614 2.20006 2.55080 2.83943 3.12729 3.31102 3.35737 3.46021 3.62655 3.85127 3.93214 4.00361 4.16278 4.27012 4.30650 4.43393 4.48134 4.49810 4.55657 4.72992 4.74322 4.75940 4.83413 4.87789 4.97738 5.04105 5.05918 5.08771 5.17392 5.33287 5.41611 5.46799 5.52134 5.59895 5.73214 5.89110 6.01878 6.38853 6.49101 6.55097 6.65800 7.39316 8.68361 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032659 B = 0.003351 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.151072 B = 8352.617341 C = 8563.380630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.060 4.060 3 C -0.105 4.105 4 C 0.067 3.933 5 H 0.084 0.916 6 N -0.660 5.660 7 C 0.197 3.803 8 C -0.611 4.611 9 H 0.055 0.945 10 C -0.037 4.037 11 N -0.937 5.937 12 Si 1.124 2.876 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.270 1.270 16 C -0.178 4.178 17 C 0.078 3.922 18 H 0.111 0.889 19 O -0.306 6.306 20 C 0.108 3.892 21 C -0.171 4.171 22 C -0.082 4.082 23 C -0.165 4.165 24 C -0.087 4.087 25 C -0.225 4.225 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.337 0.663 33 H -0.044 1.044 34 H -0.003 1.003 35 H 0.254 0.746 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.133 0.867 39 H 0.154 0.846 40 H 0.148 0.852 41 H 0.143 0.857 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.764 1.411 -23.589 23.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.062 4.062 3 C -0.163 4.163 4 C -0.044 4.044 5 H 0.103 0.897 6 N -0.289 5.289 7 C 0.069 3.931 8 C -0.649 4.649 9 H 0.073 0.927 10 C -0.234 4.234 11 N -0.574 5.574 12 Si 0.945 3.055 13 H -0.197 1.197 14 H -0.208 1.208 15 H -0.195 1.195 16 C -0.218 4.218 17 C 0.021 3.979 18 H 0.128 0.872 19 O -0.220 6.220 20 C 0.063 3.937 21 C -0.190 4.190 22 C -0.100 4.100 23 C -0.183 4.183 24 C -0.105 4.105 25 C -0.244 4.244 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.155 0.845 33 H -0.026 1.026 34 H 0.015 0.985 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.151 0.849 39 H 0.172 0.828 40 H 0.166 0.834 41 H 0.161 0.839 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.928 1.811 -21.766 21.926 hybrid contribution 0.208 -1.079 -1.458 1.825 sum -1.720 0.733 -23.223 23.298 Atomic orbital electron populations 1.21713 0.92724 1.02337 1.02168 1.22245 0.96272 0.96043 0.91601 1.21198 0.99954 0.93630 1.01493 1.22897 0.96766 0.95663 0.89071 0.89743 1.60296 1.28399 1.37305 1.02912 1.19367 0.93698 0.90804 0.89208 1.22399 1.44551 1.00923 0.97001 0.92679 1.27438 0.95497 0.96820 1.03651 1.70898 1.40975 1.10829 1.34748 0.82836 0.76283 0.74272 0.72073 1.19739 1.20788 1.19510 1.24163 0.98675 1.01976 0.96953 1.24056 0.95346 0.95932 0.82553 0.87195 1.86150 1.78125 1.39700 1.17990 1.19431 0.96445 0.91166 0.86669 1.20725 1.06066 1.01233 0.90951 1.21324 0.96817 0.94408 0.97447 1.21426 1.02550 0.95144 0.99184 1.21284 0.96621 1.00705 0.91902 1.21473 1.08556 0.93572 1.00769 0.92737 0.91237 0.91851 0.93313 0.91876 0.92454 0.84469 1.02640 0.98540 0.93657 0.89577 0.91045 0.84901 0.82843 0.83430 0.83946 0.85383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 9.19 71.98 0.66 -2.71 16 2 C -0.06 -1.74 1.35 -51.65 -0.07 -1.81 16 3 C -0.11 -3.07 7.82 71.98 0.56 -2.51 16 4 C 0.07 2.33 3.64 45.44 0.17 2.49 16 5 H 0.08 3.03 7.82 -2.39 -0.02 3.01 16 6 N -0.66 -28.23 5.53 -492.85 -2.72 -30.96 16 7 C 0.20 10.47 4.59 85.56 0.39 10.86 16 8 C -0.61 -35.32 9.32 25.60 0.24 -35.08 16 9 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 10 C -0.04 -2.13 5.46 84.65 0.46 -1.67 16 11 N -0.94 -58.32 13.65 21.45 0.29 -58.03 16 12 Si 1.12 50.76 29.90 68.60 2.05 52.81 16 13 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 14 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 15 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 16 C -0.18 -5.38 7.18 31.12 0.22 -5.15 16 17 C 0.08 2.05 3.04 31.12 0.09 2.15 16 18 H 0.11 2.57 5.86 -2.39 -0.01 2.56 16 19 O -0.31 -8.36 9.25 -92.44 -0.86 -9.22 16 20 C 0.11 2.67 6.68 22.51 0.15 2.82 16 21 C -0.17 -3.62 9.99 22.37 0.22 -3.40 16 22 C -0.08 -1.35 10.04 22.25 0.22 -1.12 16 23 C -0.17 -2.58 10.04 22.28 0.22 -2.36 16 24 C -0.09 -1.56 10.04 22.25 0.22 -1.34 16 25 C -0.23 -4.99 9.01 22.37 0.20 -4.78 16 26 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.06 1.44 7.94 -2.39 -0.02 1.42 16 29 H 0.05 1.45 7.20 -2.39 -0.02 1.43 16 30 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.06 1.85 7.77 -2.39 -0.02 1.83 16 32 H 0.34 14.11 8.11 -89.70 -0.73 13.39 16 33 H -0.04 -2.47 8.01 -2.38 -0.02 -2.49 16 34 H 0.00 -0.19 8.00 -2.39 -0.02 -0.21 16 35 H 0.25 16.00 7.22 -92.71 -0.67 15.33 16 36 H 0.09 2.72 7.34 -2.39 -0.02 2.70 16 37 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 38 H 0.13 2.57 8.06 -2.91 -0.02 2.54 16 39 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 40 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 41 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 42 H 0.13 2.71 5.95 -2.91 -0.02 2.69 16 Total: -1.00 -66.55 340.88 3.11 -63.44 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: 0.37 Total: 25.57 kcal Atomic # 6 Polarization: -47.60 SS G_CDS: 3.98 Total: -43.62 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -2.43 Total: -88.98 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -0.86 Total: -9.22 kcal Atomic # 14 Polarization: 50.76 SS G_CDS: 2.05 Total: 52.81 kcal Total: -66.55 3.11 -63.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894084202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.771 kcal (2) G-P(sol) polarization free energy of solvation -66.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds