Wall clock time and date at job start Mon Mar 30 2020 01:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 112.90699 * 2 1 4 4 C 1.53779 * 113.61688 * 131.24806 * 2 1 3 5 5 H 1.09006 * 113.61424 * 25.34599 * 4 2 1 6 6 N 1.46906 * 113.61612 * 254.53453 * 4 2 1 7 7 C 1.46895 * 110.99998 * 154.99767 * 6 4 2 8 8 C 1.50706 * 109.47060 * 179.97438 * 7 6 4 9 9 H 1.07999 * 119.99625 * 359.97438 * 8 7 6 10 10 C 1.37873 * 119.99855 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00524 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99740 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47155 * 59.99868 * 12 10 8 14 14 H 1.48507 * 109.47214 * 300.00053 * 12 10 8 15 15 H 1.48498 * 109.47170 * 180.02562 * 12 10 8 16 16 C 1.53778 * 87.08069 * 139.98317 * 4 2 1 17 17 C 1.53774 * 113.61628 * 228.74729 * 2 1 3 18 18 H 1.09004 * 113.61458 * 105.46964 * 17 2 1 19 19 O 1.42903 * 113.61254 * 334.64989 * 17 2 1 20 20 C 1.35906 * 116.99794 * 156.68920 * 19 17 2 21 21 C 1.38731 * 120.05743 * 5.43602 * 20 19 17 22 22 C 1.38144 * 119.94573 * 179.69905 * 21 20 19 23 23 C 1.38270 * 120.05297 * 0.59755 * 22 21 20 24 24 C 1.38272 * 120.10971 * 359.67399 * 23 22 21 25 25 C 1.38137 * 120.05580 * 0.02785 * 24 23 22 26 26 H 1.09001 * 109.46799 * 288.74958 * 1 2 3 27 27 H 1.08997 * 109.46891 * 48.75345 * 1 2 3 28 28 H 1.09001 * 109.46848 * 168.75108 * 1 2 3 29 29 H 1.08997 * 109.46870 * 191.25395 * 3 2 1 30 30 H 1.09001 * 109.46534 * 311.25109 * 3 2 1 31 31 H 1.09000 * 109.47396 * 71.24645 * 3 2 1 32 32 H 1.00904 * 111.00182 * 31.04077 * 6 4 2 33 33 H 1.09006 * 109.47565 * 59.99923 * 7 6 4 34 34 H 1.08998 * 109.47624 * 299.99588 * 7 6 4 35 35 H 0.97006 * 119.99496 * 359.97438 * 11 10 8 36 36 H 1.09001 * 113.61657 * 89.12065 * 16 4 2 37 37 H 1.09007 * 113.60868 * 220.01942 * 16 4 2 38 38 H 1.08006 * 120.02357 * 359.97438 * 21 20 19 39 39 H 1.08000 * 119.97332 * 180.26722 * 22 21 20 40 40 H 1.07994 * 119.94293 * 179.70039 * 23 22 21 41 41 H 1.07997 * 119.96985 * 180.02562 * 24 23 22 42 42 H 1.08003 * 120.02741 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1256 1.4094 0.0000 4 6 2.1461 -0.9290 1.0594 5 1 1.4940 -1.7526 1.3502 6 7 2.7107 -0.2143 2.2120 7 6 2.7358 -1.0734 3.4033 8 6 3.3206 -0.3080 4.5624 9 1 3.6419 0.7142 4.4273 10 6 3.4464 -0.9131 5.7948 11 7 3.0565 -2.1583 5.9589 12 14 4.1719 0.0354 7.2312 13 1 3.3395 1.2346 7.5036 14 1 5.5554 0.4589 6.8966 15 1 4.1983 -0.8333 8.4353 16 6 3.1924 -1.3135 0.0000 17 6 2.1461 -0.9290 -1.0593 18 1 2.5651 -0.3988 -1.9145 19 8 1.2912 -2.0089 -1.4403 20 6 1.5112 -2.5696 -2.6586 21 6 2.5972 -2.1678 -3.4226 22 6 2.8222 -2.7438 -4.6579 23 6 1.9590 -3.7112 -5.1384 24 6 0.8726 -4.1093 -4.3813 25 6 0.6469 -3.5408 -3.1428 26 1 -0.3633 0.3303 0.9732 27 1 -0.3633 0.6775 -0.7727 28 1 -0.3633 -1.0079 -0.2005 29 1 3.1954 1.3517 -0.2006 30 1 1.6428 2.0077 -0.7727 31 1 1.9627 1.8727 0.9731 32 1 2.2035 0.6392 2.3922 33 1 3.3473 -1.9534 3.2040 34 1 1.7203 -1.3845 3.6484 35 1 2.6801 -2.6510 5.2129 36 1 4.0712 -0.6686 0.0000 37 1 3.4444 -2.3740 0.0001 38 1 3.2688 -1.4085 -3.0498 39 1 3.6700 -2.4344 -5.2511 40 1 2.1338 -4.1568 -6.1065 41 1 0.2001 -4.8654 -4.7587 42 1 -0.2016 -3.8525 -2.5516 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894084203.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:52 Heat of formation + Delta-G solvation = 3.757197 kcal Electronic energy + Delta-G solvation = -21145.124625 eV Core-core repulsion = 18090.813781 eV Total energy + Delta-G solvation = -3054.310844 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.81207 -39.10360 -36.73051 -34.19632 -31.88279 -31.20249 -30.40923 -29.71675 -27.29695 -26.22957 -24.09136 -22.71048 -22.49000 -21.81644 -21.36423 -18.69970 -17.90502 -16.85261 -16.06038 -15.87805 -15.43226 -14.91252 -14.61171 -14.52963 -14.23883 -13.70330 -13.57320 -13.31081 -12.93893 -12.81432 -12.47855 -12.29614 -12.00343 -11.88882 -11.81136 -11.70602 -11.33698 -11.09247 -10.86435 -10.69236 -10.62409 -10.58497 -10.09119 -9.93437 -9.72186 -9.15725 -8.58885 -8.41042 -8.26453 -7.42674 -6.36927 -4.05975 1.18740 1.31769 3.07158 3.44455 3.47142 3.65022 3.65692 4.46926 4.53253 4.60776 4.69058 4.74582 4.84740 4.95895 5.06444 5.16366 5.23146 5.32695 5.39303 5.41977 5.46461 5.53259 5.74460 5.77224 5.84993 5.87471 5.97325 6.05185 6.16855 6.20065 6.23197 6.26483 6.33249 6.37207 6.52105 6.55673 6.71301 6.99443 7.16861 7.43879 7.80897 8.16357 8.46457 8.58008 8.87592 9.66161 11.02874 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030110 B = 0.003477 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.700663 B = 8051.304707 C = 8349.056258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.083 4.083 3 C -0.119 4.119 4 C 0.076 3.924 5 H 0.067 0.933 6 N -0.668 5.668 7 C 0.183 3.817 8 C -0.596 4.596 9 H 0.055 0.945 10 C 0.014 3.986 11 N -0.913 5.913 12 Si 1.073 2.927 13 H -0.288 1.288 14 H -0.287 1.287 15 H -0.283 1.283 16 C -0.141 4.141 17 C 0.061 3.939 18 H 0.085 0.915 19 O -0.289 6.289 20 C 0.138 3.862 21 C -0.210 4.210 22 C -0.081 4.081 23 C -0.166 4.166 24 C -0.082 4.082 25 C -0.157 4.157 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.332 0.668 33 H 0.017 0.983 34 H -0.025 1.025 35 H 0.267 0.733 36 H 0.100 0.900 37 H 0.067 0.933 38 H 0.131 0.869 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.126 0.874 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.904 1.217 -21.521 21.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.084 4.084 3 C -0.177 4.177 4 C -0.035 4.035 5 H 0.085 0.915 6 N -0.299 5.299 7 C 0.056 3.944 8 C -0.634 4.634 9 H 0.074 0.926 10 C -0.190 4.190 11 N -0.550 5.550 12 Si 0.901 3.099 13 H -0.215 1.215 14 H -0.214 1.214 15 H -0.208 1.208 16 C -0.180 4.180 17 C 0.004 3.996 18 H 0.103 0.897 19 O -0.202 6.202 20 C 0.092 3.908 21 C -0.229 4.229 22 C -0.099 4.099 23 C -0.184 4.184 24 C -0.100 4.100 25 C -0.176 4.176 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.151 0.849 33 H 0.035 0.965 34 H -0.007 1.007 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.086 0.914 38 H 0.148 0.852 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.144 0.856 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.997 0.920 -19.899 20.145 hybrid contribution -1.119 0.037 -1.492 1.866 sum -4.117 0.958 -21.392 21.805 Atomic orbital electron populations 1.21645 0.93878 1.02314 1.01442 1.22353 0.95922 0.95098 0.94998 1.21463 1.00854 0.93077 1.02271 1.22989 0.94115 0.95630 0.90756 0.91470 1.60742 1.55815 1.07776 1.05590 1.19696 0.94178 0.93229 0.87302 1.22000 1.44995 1.00937 0.95489 0.92641 1.25863 0.95888 0.96772 1.00448 1.70790 1.39296 1.09705 1.35181 0.83485 0.76131 0.74831 0.75433 1.21480 1.21380 1.20830 1.23563 0.97686 1.02017 0.94708 1.23524 0.92225 0.87394 0.96449 0.89750 1.86077 1.55812 1.47478 1.30823 1.19116 0.93664 0.93172 0.84825 1.21348 0.99786 1.04668 0.97064 1.20952 0.98546 0.95465 0.94914 1.21030 0.96593 1.00107 1.00717 1.20944 0.97168 0.98518 0.93389 1.20472 1.00851 0.98985 0.97279 0.92481 0.92919 0.91666 0.91718 0.92893 0.91059 0.84868 0.96463 1.00690 0.92270 0.88159 0.91381 0.85173 0.85965 0.86147 0.85574 0.85318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.04 37.16 0.34 -1.50 16 2 C -0.08 -1.18 1.26 -153.70 -0.19 -1.38 16 3 C -0.12 -1.52 8.46 37.16 0.31 -1.21 16 4 C 0.08 1.37 3.53 -66.90 -0.24 1.14 16 5 H 0.07 1.34 7.82 -51.93 -0.41 0.94 16 6 N -0.67 -14.24 6.06 -107.13 -0.65 -14.89 16 7 C 0.18 4.85 4.59 -4.98 -0.02 4.82 16 8 C -0.60 -17.20 9.32 -34.44 -0.32 -17.52 16 9 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 10 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 11 N -0.91 -28.39 13.65 55.43 0.76 -27.63 16 12 Si 1.07 25.57 29.90 -169.99 -5.08 20.48 16 13 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 14 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 C -0.14 -2.25 7.36 -25.92 -0.19 -2.44 16 17 C 0.06 0.83 3.16 -25.92 -0.08 0.75 16 18 H 0.08 1.01 5.91 -51.93 -0.31 0.70 16 19 O -0.29 -4.21 8.60 -19.45 -0.17 -4.37 16 20 C 0.14 1.81 6.68 -39.22 -0.26 1.55 16 21 C -0.21 -2.45 9.02 -39.43 -0.36 -2.81 16 22 C -0.08 -0.81 10.04 -39.60 -0.40 -1.21 16 23 C -0.17 -1.57 10.04 -39.56 -0.40 -1.96 16 24 C -0.08 -0.81 10.04 -39.61 -0.40 -1.20 16 25 C -0.16 -1.85 9.99 -39.44 -0.39 -2.24 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.93 6.96 -51.93 -0.36 0.57 16 29 H 0.06 0.82 7.34 -51.93 -0.38 0.44 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.96 6.72 -51.93 -0.35 0.61 16 32 H 0.33 6.80 6.92 -39.29 -0.27 6.52 16 33 H 0.02 0.49 8.01 -51.93 -0.42 0.08 16 34 H -0.02 -0.68 8.00 -51.93 -0.42 -1.10 16 35 H 0.27 8.31 7.22 -40.82 -0.29 8.02 16 36 H 0.10 1.56 7.65 -51.93 -0.40 1.16 16 37 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 38 H 0.13 1.40 5.91 -52.48 -0.31 1.09 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 LS Contribution 338.61 15.07 5.10 5.10 Total: -1.00 -31.55 338.61 -9.24 -40.78 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.50 Total: 5.43 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: -2.70 Total: -24.90 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: 0.11 Total: -42.52 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.17 Total: -4.37 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -5.08 Total: 20.48 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.55 -9.24 -40.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894084203.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.540 kcal (2) G-P(sol) polarization free energy of solvation -31.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds