Wall clock time and date at job start Mon Mar 30 2020 01:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 112.90699 * 2 1 4 4 C 1.53779 * 113.61688 * 131.24806 * 2 1 3 5 5 H 1.09006 * 113.61424 * 25.34599 * 4 2 1 6 6 N 1.46906 * 113.61612 * 254.53453 * 4 2 1 7 7 C 1.46895 * 110.99998 * 154.99767 * 6 4 2 8 8 C 1.50706 * 109.47060 * 179.97438 * 7 6 4 9 9 H 1.07999 * 119.99625 * 359.97438 * 8 7 6 10 10 C 1.37873 * 119.99855 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00524 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99740 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47155 * 59.99868 * 12 10 8 14 14 H 1.48507 * 109.47214 * 300.00053 * 12 10 8 15 15 H 1.48498 * 109.47170 * 180.02562 * 12 10 8 16 16 C 1.53778 * 87.08069 * 139.98317 * 4 2 1 17 17 C 1.53774 * 113.61628 * 228.74729 * 2 1 3 18 18 H 1.09004 * 113.61458 * 105.46964 * 17 2 1 19 19 O 1.42903 * 113.61254 * 334.64989 * 17 2 1 20 20 C 1.35906 * 116.99794 * 156.68920 * 19 17 2 21 21 C 1.38731 * 120.05743 * 5.43602 * 20 19 17 22 22 C 1.38144 * 119.94573 * 179.69905 * 21 20 19 23 23 C 1.38270 * 120.05297 * 0.59755 * 22 21 20 24 24 C 1.38272 * 120.10971 * 359.67399 * 23 22 21 25 25 C 1.38137 * 120.05580 * 0.02785 * 24 23 22 26 26 H 1.09001 * 109.46799 * 288.74958 * 1 2 3 27 27 H 1.08997 * 109.46891 * 48.75345 * 1 2 3 28 28 H 1.09001 * 109.46848 * 168.75108 * 1 2 3 29 29 H 1.08997 * 109.46870 * 191.25395 * 3 2 1 30 30 H 1.09001 * 109.46534 * 311.25109 * 3 2 1 31 31 H 1.09000 * 109.47396 * 71.24645 * 3 2 1 32 32 H 1.00904 * 111.00182 * 31.04077 * 6 4 2 33 33 H 1.09006 * 109.47565 * 59.99923 * 7 6 4 34 34 H 1.08998 * 109.47624 * 299.99588 * 7 6 4 35 35 H 0.97006 * 119.99496 * 359.97438 * 11 10 8 36 36 H 1.09001 * 113.61657 * 89.12065 * 16 4 2 37 37 H 1.09007 * 113.60868 * 220.01942 * 16 4 2 38 38 H 1.08006 * 120.02357 * 359.97438 * 21 20 19 39 39 H 1.08000 * 119.97332 * 180.26722 * 22 21 20 40 40 H 1.07994 * 119.94293 * 179.70039 * 23 22 21 41 41 H 1.07997 * 119.96985 * 180.02562 * 24 23 22 42 42 H 1.08003 * 120.02741 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1256 1.4094 0.0000 4 6 2.1461 -0.9290 1.0594 5 1 1.4940 -1.7526 1.3502 6 7 2.7107 -0.2143 2.2120 7 6 2.7358 -1.0734 3.4033 8 6 3.3206 -0.3080 4.5624 9 1 3.6419 0.7142 4.4273 10 6 3.4464 -0.9131 5.7948 11 7 3.0565 -2.1583 5.9589 12 14 4.1719 0.0354 7.2312 13 1 3.3395 1.2346 7.5036 14 1 5.5554 0.4589 6.8966 15 1 4.1983 -0.8333 8.4353 16 6 3.1924 -1.3135 0.0000 17 6 2.1461 -0.9290 -1.0593 18 1 2.5651 -0.3988 -1.9145 19 8 1.2912 -2.0089 -1.4403 20 6 1.5112 -2.5696 -2.6586 21 6 2.5972 -2.1678 -3.4226 22 6 2.8222 -2.7438 -4.6579 23 6 1.9590 -3.7112 -5.1384 24 6 0.8726 -4.1093 -4.3813 25 6 0.6469 -3.5408 -3.1428 26 1 -0.3633 0.3303 0.9732 27 1 -0.3633 0.6775 -0.7727 28 1 -0.3633 -1.0079 -0.2005 29 1 3.1954 1.3517 -0.2006 30 1 1.6428 2.0077 -0.7727 31 1 1.9627 1.8727 0.9731 32 1 2.2035 0.6392 2.3922 33 1 3.3473 -1.9534 3.2040 34 1 1.7203 -1.3845 3.6484 35 1 2.6801 -2.6510 5.2129 36 1 4.0712 -0.6686 0.0000 37 1 3.4444 -2.3740 0.0001 38 1 3.2688 -1.4085 -3.0498 39 1 3.6700 -2.4344 -5.2511 40 1 2.1338 -4.1568 -6.1065 41 1 0.2001 -4.8654 -4.7587 42 1 -0.2016 -3.8525 -2.5516 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894084203.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:52 Heat of formation + Delta-G solvation = -14.986417 kcal Electronic energy + Delta-G solvation = -21145.937409 eV Core-core repulsion = 18090.813781 eV Total energy + Delta-G solvation = -3055.123628 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.93478 -40.11359 -37.80588 -36.17487 -33.84976 -32.05012 -31.52096 -30.64905 -28.37542 -28.20373 -25.48527 -24.26403 -23.61592 -23.02683 -22.69121 -19.81737 -19.27261 -18.65264 -17.23461 -16.80526 -16.63345 -16.28773 -15.86311 -15.76701 -15.59737 -15.34065 -14.85199 -14.41373 -14.23252 -14.19030 -13.91171 -13.61398 -13.25003 -13.15588 -13.04753 -12.83886 -12.70729 -12.49392 -12.45643 -12.09179 -11.95096 -11.92519 -11.79546 -11.19151 -11.05521 -10.67722 -10.63155 -9.96010 -9.28826 -9.15396 -8.74003 -6.45251 0.38552 0.48209 1.52542 1.61813 1.81281 2.07059 2.54929 2.83104 3.11129 3.28493 3.37525 3.42602 3.75436 3.86927 3.95028 3.99638 4.13029 4.18235 4.31149 4.43549 4.49663 4.54303 4.62518 4.70171 4.71035 4.74776 4.85709 4.88012 4.92940 4.98084 5.05451 5.07914 5.13197 5.30421 5.41388 5.43422 5.48992 5.59260 5.72472 5.89157 5.98543 6.35562 6.47712 6.51649 6.65743 7.38449 8.65343 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030110 B = 0.003477 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.700663 B = 8051.304707 C = 8349.056258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.071 4.071 3 C -0.117 4.117 4 C 0.058 3.942 5 H 0.037 0.963 6 N -0.659 5.659 7 C 0.196 3.804 8 C -0.610 4.610 9 H 0.060 0.940 10 C -0.040 4.040 11 N -0.937 5.937 12 Si 1.126 2.874 13 H -0.265 1.265 14 H -0.268 1.268 15 H -0.284 1.284 16 C -0.139 4.139 17 C 0.077 3.923 18 H 0.112 0.888 19 O -0.309 6.309 20 C 0.107 3.893 21 C -0.220 4.220 22 C -0.084 4.084 23 C -0.164 4.164 24 C -0.083 4.083 25 C -0.175 4.175 26 H 0.048 0.952 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.338 0.662 33 H -0.011 1.011 34 H -0.051 1.051 35 H 0.251 0.749 36 H 0.107 0.893 37 H 0.052 0.948 38 H 0.136 0.864 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.306 2.771 -23.634 24.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.072 4.072 3 C -0.174 4.174 4 C -0.053 4.053 5 H 0.055 0.945 6 N -0.290 5.290 7 C 0.068 3.932 8 C -0.648 4.648 9 H 0.079 0.921 10 C -0.237 4.237 11 N -0.575 5.575 12 Si 0.946 3.054 13 H -0.190 1.190 14 H -0.193 1.193 15 H -0.210 1.210 16 C -0.178 4.178 17 C 0.021 3.979 18 H 0.129 0.871 19 O -0.223 6.223 20 C 0.062 3.938 21 C -0.239 4.239 22 C -0.102 4.102 23 C -0.182 4.182 24 C -0.101 4.101 25 C -0.194 4.194 26 H 0.067 0.933 27 H 0.096 0.904 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.157 0.843 33 H 0.007 0.993 34 H -0.033 1.033 35 H 0.060 0.940 36 H 0.126 0.874 37 H 0.070 0.930 38 H 0.154 0.846 39 H 0.166 0.834 40 H 0.167 0.833 41 H 0.170 0.830 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.412 2.478 -22.063 22.332 hybrid contribution -1.338 -0.546 -0.964 1.737 sum -3.750 1.932 -23.027 23.410 Atomic orbital electron populations 1.21618 0.93305 1.02212 1.01843 1.22333 0.96393 0.95571 0.92883 1.21485 1.01220 0.91896 1.02835 1.23124 0.95484 0.96100 0.90558 0.94500 1.60664 1.56582 1.07357 1.04396 1.19359 0.91871 0.92858 0.89101 1.22374 1.44743 1.01288 0.96361 0.92135 1.27574 0.95402 0.96769 1.03912 1.70932 1.40977 1.10946 1.34601 0.82841 0.76615 0.74158 0.71833 1.19033 1.19319 1.20987 1.23541 0.98084 1.01209 0.94955 1.23341 0.90928 0.87081 0.96584 0.87066 1.86052 1.56136 1.48003 1.32094 1.19424 0.95173 0.94427 0.84772 1.21513 0.99456 1.05176 0.97742 1.21324 0.99337 0.95146 0.94419 1.21450 0.95736 0.99337 1.01632 1.21299 0.97744 0.98550 0.92490 1.20699 1.01015 0.99301 0.98369 0.93258 0.90395 0.92919 0.91469 0.89933 0.91943 0.84274 0.99338 1.03335 0.93985 0.87425 0.92956 0.84596 0.83417 0.83260 0.83021 0.85528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.54 9.04 71.98 0.65 -2.89 16 2 C -0.07 -1.99 1.26 -51.66 -0.07 -2.05 16 3 C -0.12 -2.75 8.46 71.98 0.61 -2.14 16 4 C 0.06 2.17 3.53 45.44 0.16 2.33 16 5 H 0.04 1.61 7.82 -2.38 -0.02 1.59 16 6 N -0.66 -28.97 6.06 -492.84 -2.98 -31.95 16 7 C 0.20 10.93 4.59 85.56 0.39 11.32 16 8 C -0.61 -35.86 9.32 25.60 0.24 -35.63 16 9 H 0.06 3.44 7.81 -2.91 -0.02 3.42 16 10 C -0.04 -2.34 5.46 84.65 0.46 -1.88 16 11 N -0.94 -59.97 13.65 21.45 0.29 -59.68 16 12 Si 1.13 50.96 29.90 68.60 2.05 53.01 16 13 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 14 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 15 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 16 C -0.14 -4.53 7.36 31.12 0.23 -4.30 16 17 C 0.08 2.08 3.16 31.12 0.10 2.17 16 18 H 0.11 2.41 5.91 -2.38 -0.01 2.40 16 19 O -0.31 -9.13 8.60 -92.49 -0.80 -9.93 16 20 C 0.11 2.78 6.68 22.51 0.15 2.93 16 21 C -0.22 -4.82 9.02 22.37 0.20 -4.62 16 22 C -0.08 -1.47 10.04 22.25 0.22 -1.25 16 23 C -0.16 -2.60 10.04 22.29 0.22 -2.37 16 24 C -0.08 -1.46 10.04 22.25 0.22 -1.24 16 25 C -0.18 -4.05 9.99 22.36 0.22 -3.83 16 26 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.05 1.53 6.96 -2.39 -0.02 1.51 16 29 H 0.07 1.55 7.34 -2.39 -0.02 1.54 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 1.59 6.72 -2.39 -0.02 1.57 16 32 H 0.34 14.03 6.92 -89.69 -0.62 13.41 16 33 H -0.01 -0.69 8.01 -2.38 -0.02 -0.71 16 34 H -0.05 -3.04 8.00 -2.39 -0.02 -3.06 16 35 H 0.25 16.46 7.22 -92.70 -0.67 15.79 16 36 H 0.11 3.32 7.65 -2.39 -0.02 3.30 16 37 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 38 H 0.14 2.68 5.91 -2.91 -0.02 2.66 16 39 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 40 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 41 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 42 H 0.13 2.83 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -70.58 338.61 3.07 -67.52 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 0.48 Total: 24.47 kcal Atomic # 6 Polarization: -47.46 SS G_CDS: 4.02 Total: -43.44 kcal Atomic # 7 Polarization: -88.94 SS G_CDS: -2.69 Total: -91.63 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -0.80 Total: -9.93 kcal Atomic # 14 Polarization: 50.96 SS G_CDS: 2.05 Total: 53.01 kcal Total: -70.58 3.07 -67.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894084203.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.530 kcal (2) G-P(sol) polarization free energy of solvation -70.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds