Wall clock time and date at job start Mon Mar 30 2020 01:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52999 * 110.45897 * 2 1 4 4 C 1.54478 * 110.51461 * 237.24095 * 2 1 3 5 5 O 1.44418 * 104.80594 * 217.37628 * 4 2 1 6 6 C 1.44430 * 105.27528 * 40.51494 * 5 4 2 7 7 C 1.54480 * 104.79910 * 319.48525 * 6 5 4 8 8 H 1.08999 * 110.62952 * 265.26951 * 7 6 5 9 9 N 1.46505 * 110.50549 * 142.62194 * 7 6 5 10 10 C 1.39680 * 120.00023 * 90.36100 * 9 7 6 11 11 C 1.38910 * 120.07355 * 179.97438 * 10 9 7 12 12 C 1.38103 * 119.92353 * 179.97438 * 11 10 9 13 13 C 1.38295 * 120.07380 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.92470 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47168 * 89.99621 * 14 13 12 16 16 H 1.07999 * 120.00202 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99746 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99573 * 0.27650 * 17 15 14 19 19 Si 1.86800 * 119.99781 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46758 * 89.99934 * 19 17 15 21 21 H 1.48499 * 109.47026 * 209.99782 * 19 17 15 22 22 H 1.48496 * 109.47474 * 329.99818 * 19 17 15 23 23 C 1.38281 * 120.14876 * 0.26858 * 13 12 11 24 24 C 1.38103 * 120.07619 * 359.46191 * 23 13 12 25 25 H 1.09005 * 109.47885 * 297.39958 * 1 2 3 26 26 H 1.09006 * 109.47128 * 57.40125 * 1 2 3 27 27 H 1.08997 * 109.47403 * 177.39407 * 1 2 3 28 28 H 1.09001 * 109.47521 * 182.60300 * 3 2 1 29 29 H 1.09000 * 109.47139 * 302.59903 * 3 2 1 30 30 H 1.08998 * 109.47230 * 62.60341 * 3 2 1 31 31 H 1.08994 * 110.37223 * 336.21514 * 4 2 1 32 32 H 1.09000 * 110.36778 * 98.43953 * 4 2 1 33 33 H 1.09002 * 110.37128 * 200.65429 * 6 5 4 34 34 H 1.09001 * 110.36948 * 78.31659 * 6 5 4 35 35 H 0.96997 * 119.99903 * 270.35449 * 9 7 6 36 36 H 1.07999 * 120.03691 * 359.97438 * 11 10 9 37 37 H 1.07995 * 119.96407 * 180.02562 * 12 11 10 38 38 H 1.09000 * 109.46490 * 329.99738 * 14 13 12 39 39 H 1.08999 * 109.46382 * 209.99955 * 14 13 12 40 40 H 0.97001 * 120.00651 * 359.71956 * 18 17 15 41 41 H 1.08004 * 119.96198 * 179.70254 * 23 13 12 42 42 H 1.08005 * 120.04260 * 180.26692 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0647 1.4335 0.0000 4 6 2.0713 -0.7829 -1.2167 5 8 3.2398 -1.4723 -0.7218 6 6 2.8756 -1.9414 0.5948 7 6 2.0713 -0.7797 1.2192 8 1 2.7198 -0.1440 1.8219 9 7 0.9660 -1.2979 2.0291 10 6 1.1585 -1.5598 3.3876 11 6 0.1114 -2.0507 4.1571 12 6 0.3054 -2.3091 5.4998 13 6 1.5405 -2.0802 6.0782 14 6 1.7486 -2.3639 7.5436 15 6 2.2108 -3.7875 7.7190 16 1 2.3404 -4.4234 6.8557 17 6 2.4671 -4.2785 8.9817 18 7 2.3030 -3.5060 10.0333 19 14 3.0393 -6.0433 9.1991 20 1 4.5226 -6.0924 9.1491 21 1 2.5709 -6.5574 10.5112 22 1 2.4792 -6.8831 8.1100 23 6 2.5836 -1.5869 5.3161 24 6 2.3981 -1.3316 3.9716 25 1 -0.3635 0.4729 0.9124 26 1 -0.3634 0.5537 -0.8658 27 1 -0.3634 -1.0266 -0.0467 28 1 3.1535 1.4151 -0.0467 29 1 1.6730 1.9674 -0.8658 30 1 1.7487 1.9392 0.9124 31 1 1.3285 -1.4990 -1.5681 32 1 2.3447 -0.0967 -2.0183 33 1 3.7688 -2.1451 1.1855 34 1 2.2562 -2.8353 0.5212 35 1 0.1004 -1.4589 1.6221 36 1 -0.8533 -2.2300 3.7059 37 1 -0.5082 -2.6911 6.0986 38 1 0.8103 -2.2180 8.0787 39 1 2.5031 -1.6852 7.9413 40 1 2.0056 -2.5896 9.9204 41 1 3.5456 -1.4047 5.7720 42 1 3.2144 -0.9503 3.3760 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926891885.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:07 Heat of formation + Delta-G solvation = -30.089680 kcal Electronic energy + Delta-G solvation = -21067.359464 eV Core-core repulsion = 18011.580909 eV Total energy + Delta-G solvation = -3055.778555 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.54542 -38.67332 -35.76997 -34.31116 -33.05321 -30.59971 -30.13815 -28.57386 -27.67065 -26.37508 -25.58205 -23.17799 -22.64801 -21.87664 -20.30389 -19.29484 -17.42947 -16.75115 -16.48880 -15.96627 -15.47128 -15.33252 -14.61531 -14.12137 -13.84426 -13.69363 -13.46615 -13.35559 -13.09699 -12.89190 -12.72440 -12.58019 -12.37164 -12.01103 -11.80049 -11.40735 -11.27862 -11.16210 -11.13264 -10.88754 -10.61577 -10.18985 -10.14059 -10.05628 -9.81788 -9.57694 -8.61216 -8.33983 -8.30473 -6.86447 -6.30125 -4.03036 2.03725 2.26602 3.37309 3.45954 3.49535 3.65615 3.87566 4.07785 4.35732 4.47306 4.53785 4.63703 4.80098 4.91776 4.98998 5.19487 5.28776 5.30841 5.39748 5.45306 5.46319 5.49699 5.52711 5.56347 5.63046 5.74710 5.81448 5.88620 5.95555 6.04226 6.22165 6.32422 6.51800 6.61888 6.76665 7.12763 7.18655 7.23793 7.39418 7.74043 7.79020 7.95184 8.21729 8.50321 8.90378 9.67807 11.06160 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031908 B = 0.003489 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.322125 B = 8022.249760 C = 8351.166168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C -0.136 4.136 4 C 0.053 3.947 5 O -0.373 6.373 6 C 0.027 3.973 7 C 0.133 3.867 8 H 0.095 0.905 9 N -0.747 5.747 10 C 0.180 3.820 11 C -0.190 4.190 12 C -0.079 4.079 13 C -0.078 4.078 14 C 0.040 3.960 15 C -0.589 4.589 16 H 0.050 0.950 17 C 0.014 3.986 18 N -0.914 5.914 19 Si 1.072 2.928 20 H -0.288 1.288 21 H -0.284 1.284 22 H -0.289 1.289 23 C -0.080 4.080 24 C -0.194 4.194 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.396 0.604 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.015 0.985 39 H 0.015 0.985 40 H 0.269 0.731 41 H 0.115 0.885 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.248 8.228 -22.077 23.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.108 4.108 3 C -0.193 4.193 4 C -0.024 4.024 5 O -0.291 6.291 6 C -0.051 4.051 7 C 0.026 3.974 8 H 0.113 0.887 9 N -0.382 5.382 10 C 0.081 3.919 11 C -0.213 4.213 12 C -0.098 4.098 13 C -0.080 4.080 14 C 0.003 3.997 15 C -0.628 4.628 16 H 0.068 0.932 17 C -0.189 4.189 18 N -0.551 5.551 19 Si 0.900 3.100 20 H -0.214 1.214 21 H -0.210 1.210 22 H -0.215 1.215 23 C -0.099 4.099 24 C -0.216 4.216 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.083 0.917 35 H 0.234 0.766 36 H 0.127 0.873 37 H 0.134 0.866 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.079 0.921 41 H 0.133 0.867 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.442 7.135 -21.108 22.415 hybrid contribution -0.944 0.999 -1.235 1.848 sum -3.386 8.134 -22.343 24.018 Atomic orbital electron populations 1.21783 0.93428 1.01850 1.02762 1.22144 0.96765 0.96775 0.95107 1.21819 1.01384 0.93830 1.02255 1.23530 0.88191 0.94815 0.95898 1.89139 1.34902 1.73894 1.31162 1.24076 1.00372 0.97042 0.83617 1.22177 0.89262 0.94276 0.91707 0.88735 1.44637 1.12997 1.74417 1.06193 1.17617 0.94106 0.96710 0.83430 1.20438 0.97616 1.08552 0.94653 1.20803 0.97379 0.98060 0.93559 1.20230 0.92437 0.96829 0.98470 1.18370 0.96569 0.97512 0.87205 1.21981 1.49159 0.96557 0.95054 0.93171 1.25868 0.95084 1.05763 0.92185 1.70752 1.43784 1.09011 1.31549 0.83503 0.76445 0.74423 0.75618 1.21448 1.21005 1.21473 1.20824 0.98637 0.97714 0.92685 1.20539 0.95777 1.09462 0.95816 0.91307 0.91995 0.92342 0.91904 0.92200 0.92030 0.92232 0.88998 0.88632 0.91696 0.76615 0.87350 0.86639 0.96642 0.96648 0.92070 0.86686 0.87242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 7.15 37.15 0.27 -0.74 16 2 C -0.11 -0.89 1.05 -152.95 -0.16 -1.05 16 3 C -0.14 -1.03 8.29 37.16 0.31 -0.72 16 4 C 0.05 0.45 6.74 37.93 0.26 0.71 16 5 O -0.37 -4.32 11.65 -35.23 -0.41 -4.73 16 6 C 0.03 0.31 7.35 37.93 0.28 0.59 16 7 C 0.13 1.42 2.82 -66.36 -0.19 1.23 16 8 H 0.09 1.08 5.99 -51.93 -0.31 0.77 16 9 N -0.75 -8.85 4.73 -50.65 -0.24 -9.09 16 10 C 0.18 2.81 6.65 -83.78 -0.56 2.26 16 11 C -0.19 -3.18 9.90 -39.38 -0.39 -3.57 16 12 C -0.08 -1.58 9.69 -39.61 -0.38 -1.96 16 13 C -0.08 -1.74 5.07 -104.58 -0.53 -2.27 16 14 C 0.04 1.05 4.41 -29.04 -0.13 0.93 16 15 C -0.59 -17.02 9.09 -34.44 -0.31 -17.33 16 16 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 17 C 0.01 0.42 5.46 -17.82 -0.10 0.32 16 18 N -0.91 -28.13 13.65 55.43 0.76 -27.37 16 19 Si 1.07 25.71 29.90 -169.99 -5.08 20.63 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 C -0.08 -1.60 9.69 -39.62 -0.38 -1.98 16 24 C -0.19 -3.26 9.22 -39.38 -0.36 -3.63 16 25 H 0.07 0.55 7.78 -51.93 -0.40 0.14 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.40 6.94 -51.93 -0.36 0.04 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.47 7.83 -51.93 -0.41 0.06 16 32 H 0.09 0.66 7.88 -51.93 -0.41 0.25 16 33 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 0.76 8.06 -51.93 -0.42 0.34 16 35 H 0.40 4.07 5.98 -40.82 -0.24 3.83 16 36 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 38 H 0.02 0.42 7.94 -51.93 -0.41 0.00 16 39 H 0.02 0.41 7.95 -51.93 -0.41 0.00 16 40 H 0.27 8.21 7.22 -40.82 -0.29 7.92 16 41 H 0.12 2.25 8.06 -52.48 -0.42 1.83 16 42 H 0.11 1.60 6.21 -52.48 -0.33 1.28 16 LS Contribution 336.25 15.07 5.07 5.07 Total: -1.00 -31.50 336.25 -8.88 -40.38 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -6.58 Total: 2.34 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: -2.39 Total: -27.22 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.52 Total: -36.46 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.41 Total: -4.73 kcal Atomic # 14 Polarization: 25.71 SS G_CDS: -5.08 Total: 20.63 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.50 -8.88 -40.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926891885.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.289 kcal (2) G-P(sol) polarization free energy of solvation -31.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds