Wall clock time and date at job start Mon Mar 30 2020 01:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52999 * 110.45897 * 2 1 4 4 C 1.54478 * 110.51461 * 237.24095 * 2 1 3 5 5 O 1.44418 * 104.80594 * 217.37628 * 4 2 1 6 6 C 1.44430 * 105.27528 * 40.51494 * 5 4 2 7 7 C 1.54480 * 104.79910 * 319.48525 * 6 5 4 8 8 H 1.08999 * 110.62952 * 265.26951 * 7 6 5 9 9 N 1.46505 * 110.50549 * 142.62194 * 7 6 5 10 10 C 1.39680 * 120.00023 * 90.36100 * 9 7 6 11 11 C 1.38910 * 120.07355 * 179.97438 * 10 9 7 12 12 C 1.38103 * 119.92353 * 179.97438 * 11 10 9 13 13 C 1.38295 * 120.07380 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.92470 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47168 * 89.99621 * 14 13 12 16 16 H 1.07999 * 120.00202 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99746 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99573 * 0.27650 * 17 15 14 19 19 Si 1.86800 * 119.99781 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46758 * 89.99934 * 19 17 15 21 21 H 1.48499 * 109.47026 * 209.99782 * 19 17 15 22 22 H 1.48496 * 109.47474 * 329.99818 * 19 17 15 23 23 C 1.38281 * 120.14876 * 0.26858 * 13 12 11 24 24 C 1.38103 * 120.07619 * 359.46191 * 23 13 12 25 25 H 1.09005 * 109.47885 * 297.39958 * 1 2 3 26 26 H 1.09006 * 109.47128 * 57.40125 * 1 2 3 27 27 H 1.08997 * 109.47403 * 177.39407 * 1 2 3 28 28 H 1.09001 * 109.47521 * 182.60300 * 3 2 1 29 29 H 1.09000 * 109.47139 * 302.59903 * 3 2 1 30 30 H 1.08998 * 109.47230 * 62.60341 * 3 2 1 31 31 H 1.08994 * 110.37223 * 336.21514 * 4 2 1 32 32 H 1.09000 * 110.36778 * 98.43953 * 4 2 1 33 33 H 1.09002 * 110.37128 * 200.65429 * 6 5 4 34 34 H 1.09001 * 110.36948 * 78.31659 * 6 5 4 35 35 H 0.96997 * 119.99903 * 270.35449 * 9 7 6 36 36 H 1.07999 * 120.03691 * 359.97438 * 11 10 9 37 37 H 1.07995 * 119.96407 * 180.02562 * 12 11 10 38 38 H 1.09000 * 109.46490 * 329.99738 * 14 13 12 39 39 H 1.08999 * 109.46382 * 209.99955 * 14 13 12 40 40 H 0.97001 * 120.00651 * 359.71956 * 18 17 15 41 41 H 1.08004 * 119.96198 * 179.70254 * 23 13 12 42 42 H 1.08005 * 120.04260 * 180.26692 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0647 1.4335 0.0000 4 6 2.0713 -0.7829 -1.2167 5 8 3.2398 -1.4723 -0.7218 6 6 2.8756 -1.9414 0.5948 7 6 2.0713 -0.7797 1.2192 8 1 2.7198 -0.1440 1.8219 9 7 0.9660 -1.2979 2.0291 10 6 1.1585 -1.5598 3.3876 11 6 0.1114 -2.0507 4.1571 12 6 0.3054 -2.3091 5.4998 13 6 1.5405 -2.0802 6.0782 14 6 1.7486 -2.3639 7.5436 15 6 2.2108 -3.7875 7.7190 16 1 2.3404 -4.4234 6.8557 17 6 2.4671 -4.2785 8.9817 18 7 2.3030 -3.5060 10.0333 19 14 3.0393 -6.0433 9.1991 20 1 4.5226 -6.0924 9.1491 21 1 2.5709 -6.5574 10.5112 22 1 2.4792 -6.8831 8.1100 23 6 2.5836 -1.5869 5.3161 24 6 2.3981 -1.3316 3.9716 25 1 -0.3635 0.4729 0.9124 26 1 -0.3634 0.5537 -0.8658 27 1 -0.3634 -1.0266 -0.0467 28 1 3.1535 1.4151 -0.0467 29 1 1.6730 1.9674 -0.8658 30 1 1.7487 1.9392 0.9124 31 1 1.3285 -1.4990 -1.5681 32 1 2.3447 -0.0967 -2.0183 33 1 3.7688 -2.1451 1.1855 34 1 2.2562 -2.8353 0.5212 35 1 0.1004 -1.4589 1.6221 36 1 -0.8533 -2.2300 3.7059 37 1 -0.5082 -2.6911 6.0986 38 1 0.8103 -2.2180 8.0787 39 1 2.5031 -1.6852 7.9413 40 1 2.0056 -2.5896 9.9204 41 1 3.5456 -1.4047 5.7720 42 1 3.2144 -0.9503 3.3760 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926891885.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:07 Heat of formation + Delta-G solvation = -48.463464 kcal Electronic energy + Delta-G solvation = -21068.156211 eV Core-core repulsion = 18011.580909 eV Total energy + Delta-G solvation = -3056.575302 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.41825 -40.02389 -36.93842 -35.66894 -34.65171 -32.03667 -31.66585 -29.67340 -28.48158 -27.25409 -26.98760 -24.94585 -24.00022 -23.09283 -21.74381 -20.13605 -18.97692 -18.48749 -17.44420 -16.87615 -16.45801 -16.23460 -16.03647 -15.62068 -15.41045 -15.15090 -14.69233 -14.37056 -14.21737 -14.18798 -13.85632 -13.69554 -13.37055 -13.29059 -12.96489 -12.91828 -12.58868 -12.47590 -12.03605 -11.96466 -11.87071 -11.70997 -11.70072 -11.52605 -11.18156 -10.80038 -10.56553 -10.45487 -9.77760 -8.73931 -8.11467 -6.38958 0.57923 0.78133 1.51531 1.60897 1.79360 2.36756 2.55776 3.03278 3.08679 3.14814 3.35544 3.69497 3.81679 3.99758 4.04597 4.13017 4.20148 4.26731 4.37455 4.56363 4.63320 4.65105 4.69022 4.70852 4.74461 4.79240 4.90118 4.94476 4.97686 5.02957 5.07172 5.11065 5.25540 5.26166 5.31338 5.43021 5.61879 5.72805 5.91871 6.00642 6.09721 6.18179 6.46291 6.58969 6.86451 7.41316 8.71263 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031908 B = 0.003489 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.322125 B = 8022.249760 C = 8351.166168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 C -0.135 4.135 4 C 0.049 3.951 5 O -0.391 6.391 6 C 0.028 3.972 7 C 0.128 3.872 8 H 0.089 0.911 9 N -0.729 5.729 10 C 0.200 3.800 11 C -0.185 4.185 12 C -0.089 4.089 13 C -0.120 4.120 14 C 0.047 3.953 15 C -0.601 4.601 16 H 0.044 0.956 17 C -0.038 4.038 18 N -0.937 5.937 19 Si 1.121 2.879 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.272 1.272 23 C -0.090 4.090 24 C -0.192 4.192 25 H 0.062 0.938 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.409 0.591 36 H 0.142 0.858 37 H 0.110 0.890 38 H -0.006 1.006 39 H -0.007 1.007 40 H 0.256 0.744 41 H 0.107 0.893 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.823 8.056 -25.269 26.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.100 4.100 3 C -0.192 4.192 4 C -0.028 4.028 5 O -0.309 6.309 6 C -0.050 4.050 7 C 0.022 3.978 8 H 0.107 0.893 9 N -0.364 5.364 10 C 0.099 3.901 11 C -0.208 4.208 12 C -0.108 4.108 13 C -0.122 4.122 14 C 0.010 3.990 15 C -0.639 4.639 16 H 0.062 0.938 17 C -0.235 4.235 18 N -0.575 5.575 19 Si 0.941 3.059 20 H -0.197 1.197 21 H -0.205 1.205 22 H -0.197 1.197 23 C -0.109 4.109 24 C -0.214 4.214 25 H 0.081 0.919 26 H 0.098 0.902 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.126 0.874 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.248 0.752 36 H 0.160 0.840 37 H 0.128 0.872 38 H 0.012 0.988 39 H 0.011 0.989 40 H 0.065 0.935 41 H 0.125 0.875 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.034 6.993 -24.359 25.524 hybrid contribution -0.790 1.154 -0.427 1.462 sum -3.824 8.147 -24.786 26.370 Atomic orbital electron populations 1.21789 0.92194 1.02468 1.03313 1.22119 0.97670 0.96693 0.93546 1.21823 1.01086 0.93452 1.02849 1.23738 0.87593 0.95193 0.96242 1.89128 1.36427 1.74307 1.31086 1.24001 1.00102 0.97058 0.83853 1.22297 0.88845 0.94344 0.92358 0.89327 1.44656 1.14064 1.73064 1.04649 1.17666 0.93162 0.94404 0.84915 1.20650 0.99330 1.07527 0.93248 1.20813 0.96250 0.98559 0.95167 1.19952 0.94692 1.01047 0.96476 1.18157 0.94507 0.95959 0.90334 1.22308 1.48808 0.97815 0.94952 0.93805 1.27459 0.94533 1.09499 0.92014 1.70881 1.45555 1.08755 1.32298 0.82895 0.77017 0.69723 0.76221 1.19690 1.20499 1.19657 1.20801 0.97771 0.98243 0.94063 1.20682 0.97198 1.08946 0.94577 0.91947 0.90221 0.91785 0.92490 0.90393 0.92566 0.91207 0.87372 0.89303 0.91943 0.75157 0.84019 0.87221 0.98761 0.98886 0.93504 0.87519 0.84896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 7.15 71.98 0.51 -0.95 16 2 C -0.10 -1.33 1.05 -51.17 -0.05 -1.38 16 3 C -0.13 -1.65 8.29 71.98 0.60 -1.06 16 4 C 0.05 0.68 6.74 72.48 0.49 1.16 16 5 O -0.39 -8.15 11.65 -148.98 -1.74 -9.89 16 6 C 0.03 0.58 7.35 72.49 0.53 1.11 16 7 C 0.13 2.38 2.82 46.01 0.13 2.51 16 8 H 0.09 1.80 5.99 -2.39 -0.01 1.79 16 9 N -0.73 -14.92 4.73 -314.15 -1.49 -16.40 16 10 C 0.20 5.78 6.65 38.21 0.25 6.03 16 11 C -0.19 -5.81 9.90 22.40 0.22 -5.59 16 12 C -0.09 -3.57 9.69 22.25 0.22 -3.36 16 13 C -0.12 -5.53 5.07 -19.84 -0.10 -5.63 16 14 C 0.05 2.63 4.41 29.10 0.13 2.76 16 15 C -0.60 -35.94 9.09 25.60 0.23 -35.71 16 16 H 0.04 2.62 7.74 -2.91 -0.02 2.59 16 17 C -0.04 -2.27 5.46 84.66 0.46 -1.81 16 18 N -0.94 -59.57 13.65 21.45 0.29 -59.28 16 19 Si 1.12 51.92 29.90 68.60 2.05 53.97 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 C -0.09 -3.67 9.69 22.25 0.22 -3.45 16 24 C -0.19 -6.23 9.22 22.40 0.21 -6.02 16 25 H 0.06 0.76 7.78 -2.38 -0.02 0.74 16 26 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 27 H 0.06 0.61 6.94 -2.39 -0.02 0.59 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.84 7.83 -2.39 -0.02 0.82 16 32 H 0.11 1.15 7.88 -2.39 -0.02 1.14 16 33 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.06 1.30 8.06 -2.39 -0.02 1.28 16 35 H 0.41 6.75 5.98 -92.71 -0.55 6.20 16 36 H 0.14 3.47 8.06 -2.91 -0.02 3.44 16 37 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 38 H -0.01 -0.34 7.94 -2.39 -0.02 -0.36 16 39 H -0.01 -0.42 7.95 -2.39 -0.02 -0.43 16 40 H 0.26 16.46 7.22 -92.71 -0.67 15.79 16 41 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 42 H 0.13 3.64 6.21 -2.91 -0.02 3.63 16 Total: -1.00 -70.20 336.25 3.71 -66.49 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.54 Total: 16.50 kcal Atomic # 6 Polarization: -55.43 SS G_CDS: 4.05 Total: -51.38 kcal Atomic # 7 Polarization: -74.49 SS G_CDS: -1.19 Total: -75.68 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -1.74 Total: -9.89 kcal Atomic # 14 Polarization: 51.92 SS G_CDS: 2.05 Total: 53.97 kcal Total: -70.20 3.71 -66.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926891885.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.025 kcal (2) G-P(sol) polarization free energy of solvation -70.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds