Wall clock time and date at job start Mon Mar 30 2020 01:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 110.56603 * 2 1 4 4 C 1.54483 * 110.51081 * 122.67796 * 2 1 3 5 5 O 1.44426 * 104.80284 * 142.62203 * 4 2 1 6 6 C 1.44422 * 105.27439 * 319.49047 * 5 4 2 7 7 C 1.54480 * 104.80651 * 40.51067 * 6 5 4 8 8 H 1.09002 * 110.51115 * 94.66169 * 7 6 5 9 9 N 1.46493 * 110.50977 * 217.23695 * 7 6 5 10 10 C 1.39669 * 120.00105 * 273.54531 * 9 7 6 11 11 C 1.38908 * 120.07791 * 359.72451 * 10 9 7 12 12 C 1.38103 * 119.92839 * 179.76888 * 11 10 9 13 13 C 1.38289 * 120.07033 * 0.50941 * 12 11 10 14 14 C 1.50703 * 119.92069 * 179.76234 * 13 12 11 15 15 C 1.50698 * 109.47590 * 269.97985 * 14 13 12 16 16 H 1.08001 * 119.99780 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99998 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99817 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00132 * 359.97438 * 17 15 14 20 20 H 1.48509 * 109.47095 * 89.99997 * 19 17 15 21 21 H 1.48495 * 109.47355 * 210.00087 * 19 17 15 22 22 H 1.48500 * 109.47152 * 330.00135 * 19 17 15 23 23 C 1.38284 * 120.15387 * 359.74424 * 13 12 11 24 24 C 1.38104 * 120.07003 * 359.97438 * 23 13 12 25 25 H 1.09003 * 109.47095 * 298.77417 * 1 2 3 26 26 H 1.09000 * 109.46993 * 58.77749 * 1 2 3 27 27 H 1.09003 * 109.46882 * 178.77571 * 1 2 3 28 28 H 1.08995 * 109.47189 * 181.21802 * 3 2 1 29 29 H 1.08993 * 109.46803 * 301.22533 * 3 2 1 30 30 H 1.09003 * 109.47081 * 61.22479 * 3 2 1 31 31 H 1.09005 * 110.37187 * 23.79488 * 4 2 1 32 32 H 1.08996 * 110.37438 * 261.45814 * 4 2 1 33 33 H 1.09008 * 110.37162 * 159.34384 * 6 5 4 34 34 H 1.08998 * 110.37176 * 281.67544 * 6 5 4 35 35 H 0.97002 * 119.99687 * 93.54677 * 9 7 6 36 36 H 1.08001 * 120.03447 * 0.02562 * 11 10 9 37 37 H 1.07998 * 119.96447 * 180.25124 * 12 11 10 38 38 H 1.09000 * 109.47281 * 29.98668 * 14 13 12 39 39 H 1.09007 * 109.46992 * 149.97504 * 14 13 12 40 40 H 0.96994 * 119.99791 * 180.02562 * 18 17 15 41 41 H 1.07999 * 119.96462 * 180.02562 * 23 13 12 42 42 H 1.07995 * 120.03274 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0675 1.4325 0.0000 4 6 2.0713 -0.7812 1.2179 5 8 3.2398 -1.4714 0.7239 6 6 2.8757 -1.9422 -0.5920 7 6 2.0714 -0.7814 -1.2180 8 1 2.7220 -0.1471 -1.8202 9 7 0.9682 -1.3006 -2.0300 10 6 1.1848 -1.6395 -3.3676 11 6 2.4443 -1.4794 -3.9311 12 6 2.6562 -1.8199 -5.2526 13 6 1.6136 -2.3099 -6.0177 14 6 1.8473 -2.6754 -7.4609 15 6 1.5884 -1.4732 -8.3319 16 1 1.2854 -0.5379 -7.8851 17 6 1.7385 -1.5675 -9.6993 18 7 1.5131 -0.5181 -10.4593 19 14 2.2633 -3.1851 -10.4720 20 1 1.0596 -3.9915 -10.7981 21 1 3.0294 -2.9144 -11.7150 22 1 3.1180 -3.9355 -9.5173 23 6 0.3572 -2.4656 -5.4613 24 6 0.1399 -2.1325 -4.1388 25 1 -0.3633 0.4947 0.9008 26 1 -0.3633 0.5327 -0.8788 27 1 -0.3633 -1.0275 -0.0220 28 1 3.1570 1.4117 -0.0218 29 1 1.6963 1.9597 -0.8788 30 1 1.7319 1.9464 0.9008 31 1 1.3285 -1.4970 1.5702 32 1 2.3464 -0.0939 2.0178 33 1 3.7689 -2.1468 -1.1825 34 1 2.2564 -2.8360 -0.5173 35 1 0.0872 -1.4091 -1.6387 36 1 3.2579 -1.0929 -3.3353 37 1 3.6362 -1.6995 -5.6902 38 1 2.8789 -3.0026 -7.5904 39 1 1.1719 -3.4824 -7.7453 40 1 1.6182 -0.5845 -11.4213 41 1 -0.4548 -2.8490 -6.0615 42 1 -0.8417 -2.2539 -3.7051 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926891886.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:12 Heat of formation + Delta-G solvation = -21.918301 kcal Electronic energy + Delta-G solvation = -21057.591901 eV Core-core repulsion = 18002.167684 eV Total energy + Delta-G solvation = -3055.424217 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.54058 -38.66364 -35.75637 -34.24488 -32.75438 -30.80350 -30.28983 -28.74369 -27.81139 -26.40102 -26.11912 -23.11697 -22.43877 -21.77719 -20.06474 -19.26473 -17.39523 -16.70626 -16.51116 -15.97641 -15.47255 -15.35528 -14.72964 -14.12489 -14.04967 -13.79335 -13.44808 -13.31131 -12.94305 -12.86820 -12.67452 -12.52432 -12.28297 -12.02812 -11.91164 -11.62379 -11.43693 -11.15199 -11.13598 -10.87219 -10.60116 -10.27084 -10.15763 -9.97678 -9.91103 -9.41931 -9.10057 -8.53452 -8.30360 -6.82069 -6.02489 -4.00531 2.05631 2.27395 3.31762 3.38694 3.39428 3.43023 3.88173 4.08819 4.37616 4.45964 4.51180 4.57447 4.81873 4.92719 5.00587 5.20077 5.29569 5.30767 5.32413 5.45327 5.48162 5.52086 5.55044 5.57922 5.62814 5.76091 5.83607 5.92180 5.95213 6.05273 6.21921 6.32606 6.51793 6.62062 6.77585 7.05959 7.09208 7.17342 7.38144 7.72167 7.73105 7.79310 7.96963 8.57024 9.04148 9.58707 11.10716 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035589 B = 0.003436 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.580494 B = 8147.067390 C = 8262.117143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 C -0.136 4.136 4 C 0.053 3.947 5 O -0.373 6.373 6 C 0.028 3.972 7 C 0.133 3.867 8 H 0.093 0.907 9 N -0.747 5.747 10 C 0.182 3.818 11 C -0.194 4.194 12 C -0.077 4.077 13 C -0.079 4.079 14 C 0.019 3.981 15 C -0.510 4.510 16 H 0.073 0.927 17 C 0.067 3.933 18 N -0.903 5.903 19 Si 0.878 3.122 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.265 1.265 23 C -0.077 4.077 24 C -0.191 4.191 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.397 0.603 36 H 0.110 0.890 37 H 0.117 0.883 38 H 0.024 0.976 39 H 0.020 0.980 40 H 0.263 0.737 41 H 0.117 0.883 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.841 -0.656 23.348 23.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 C -0.193 4.193 4 C -0.024 4.024 5 O -0.291 6.291 6 C -0.050 4.050 7 C 0.026 3.974 8 H 0.111 0.889 9 N -0.383 5.383 10 C 0.083 3.917 11 C -0.216 4.216 12 C -0.096 4.096 13 C -0.080 4.080 14 C -0.018 4.018 15 C -0.548 4.548 16 H 0.091 0.909 17 C -0.134 4.134 18 N -0.542 5.542 19 Si 0.705 3.295 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.189 1.189 23 C -0.096 4.096 24 C -0.213 4.213 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.083 0.917 35 H 0.235 0.765 36 H 0.128 0.872 37 H 0.135 0.865 38 H 0.042 0.958 39 H 0.038 0.962 40 H 0.073 0.927 41 H 0.135 0.865 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.467 -0.560 23.328 23.339 hybrid contribution -0.324 -0.698 -0.573 0.959 sum -0.790 -1.259 22.755 22.804 Atomic orbital electron populations 1.21786 0.93437 1.01876 1.02805 1.22126 0.96747 0.96815 0.94981 1.21826 1.01411 0.93815 1.02298 1.23543 0.88135 0.94809 0.95918 1.89136 1.34952 1.73832 1.31217 1.24076 1.00288 0.97032 0.83651 1.22159 0.89334 0.94229 0.91702 0.88871 1.44681 1.11458 1.73780 1.08406 1.17632 0.94029 0.96162 0.83868 1.20535 0.95447 1.09184 0.96474 1.20826 0.99108 0.97103 0.92547 1.20059 0.92636 0.98521 0.96825 1.18711 0.96906 0.97359 0.88815 1.21015 1.46118 0.96896 0.90733 0.90912 1.25019 0.94903 0.96319 0.97192 1.69908 1.49861 1.29442 1.04968 0.86805 0.79261 0.84525 0.78911 1.20250 1.21362 1.18918 1.20804 0.96896 0.98410 0.93459 1.20435 0.97337 1.08458 0.95083 0.91926 0.91274 0.92278 0.91887 0.91926 0.92194 0.92230 0.88981 0.88690 0.91748 0.76539 0.87227 0.86520 0.95762 0.96214 0.92721 0.86478 0.87326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 7.15 37.16 0.27 -0.76 16 2 C -0.11 -0.89 1.05 -152.94 -0.16 -1.05 16 3 C -0.14 -1.08 8.29 37.16 0.31 -0.77 16 4 C 0.05 0.45 6.73 37.94 0.26 0.70 16 5 O -0.37 -4.20 11.65 -35.23 -0.41 -4.61 16 6 C 0.03 0.30 7.35 37.93 0.28 0.58 16 7 C 0.13 1.40 2.69 -66.37 -0.18 1.22 16 8 H 0.09 1.08 6.19 -51.93 -0.32 0.76 16 9 N -0.75 -8.74 4.88 -50.66 -0.25 -8.98 16 10 C 0.18 2.79 6.65 -83.79 -0.56 2.23 16 11 C -0.19 -3.19 9.22 -39.38 -0.36 -3.56 16 12 C -0.08 -1.48 9.69 -39.61 -0.38 -1.87 16 13 C -0.08 -1.68 5.07 -104.58 -0.53 -2.21 16 14 C 0.02 0.47 4.17 -29.03 -0.12 0.35 16 15 C -0.51 -14.65 9.65 -34.44 -0.33 -14.99 16 16 H 0.07 2.29 7.98 -52.49 -0.42 1.88 16 17 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 18 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 19 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 23 C -0.08 -1.47 9.69 -39.61 -0.38 -1.86 16 24 C -0.19 -3.10 9.90 -39.38 -0.39 -3.49 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.56 7.94 -51.93 -0.41 0.15 16 27 H 0.06 0.40 6.80 -51.93 -0.35 0.05 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.46 7.87 -51.93 -0.41 0.05 16 32 H 0.09 0.65 7.87 -51.93 -0.41 0.24 16 33 H 0.09 1.02 8.14 -51.92 -0.42 0.60 16 34 H 0.06 0.71 8.06 -51.93 -0.42 0.29 16 35 H 0.40 4.02 5.79 -40.82 -0.24 3.78 16 36 H 0.11 1.57 6.28 -52.49 -0.33 1.24 16 37 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 38 H 0.02 0.58 7.14 -51.93 -0.37 0.21 16 39 H 0.02 0.47 7.51 -51.93 -0.39 0.08 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.12 2.16 8.06 -52.49 -0.42 1.73 16 42 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 334.13 15.07 5.04 5.04 Total: -1.00 -31.41 334.13 -8.53 -39.93 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -6.62 Total: 2.46 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: -2.39 Total: -23.61 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.53 Total: -36.17 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: -0.41 Total: -4.61 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.41 -8.53 -39.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926891886.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.016 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds