Wall clock time and date at job start Mon Mar 30 2020 01:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 110.56603 * 2 1 4 4 C 1.54483 * 110.51081 * 122.67796 * 2 1 3 5 5 O 1.44426 * 104.80284 * 142.62203 * 4 2 1 6 6 C 1.44422 * 105.27439 * 319.49047 * 5 4 2 7 7 C 1.54480 * 104.80651 * 40.51067 * 6 5 4 8 8 H 1.09002 * 110.51115 * 94.66169 * 7 6 5 9 9 N 1.46493 * 110.50977 * 217.23695 * 7 6 5 10 10 C 1.39669 * 120.00105 * 273.54531 * 9 7 6 11 11 C 1.38908 * 120.07791 * 359.72451 * 10 9 7 12 12 C 1.38103 * 119.92839 * 179.76888 * 11 10 9 13 13 C 1.38289 * 120.07033 * 0.50941 * 12 11 10 14 14 C 1.50703 * 119.92069 * 179.76234 * 13 12 11 15 15 C 1.50698 * 109.47590 * 269.97985 * 14 13 12 16 16 H 1.08001 * 119.99780 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99998 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99817 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00132 * 359.97438 * 17 15 14 20 20 H 1.48509 * 109.47095 * 89.99997 * 19 17 15 21 21 H 1.48495 * 109.47355 * 210.00087 * 19 17 15 22 22 H 1.48500 * 109.47152 * 330.00135 * 19 17 15 23 23 C 1.38284 * 120.15387 * 359.74424 * 13 12 11 24 24 C 1.38104 * 120.07003 * 359.97438 * 23 13 12 25 25 H 1.09003 * 109.47095 * 298.77417 * 1 2 3 26 26 H 1.09000 * 109.46993 * 58.77749 * 1 2 3 27 27 H 1.09003 * 109.46882 * 178.77571 * 1 2 3 28 28 H 1.08995 * 109.47189 * 181.21802 * 3 2 1 29 29 H 1.08993 * 109.46803 * 301.22533 * 3 2 1 30 30 H 1.09003 * 109.47081 * 61.22479 * 3 2 1 31 31 H 1.09005 * 110.37187 * 23.79488 * 4 2 1 32 32 H 1.08996 * 110.37438 * 261.45814 * 4 2 1 33 33 H 1.09008 * 110.37162 * 159.34384 * 6 5 4 34 34 H 1.08998 * 110.37176 * 281.67544 * 6 5 4 35 35 H 0.97002 * 119.99687 * 93.54677 * 9 7 6 36 36 H 1.08001 * 120.03447 * 0.02562 * 11 10 9 37 37 H 1.07998 * 119.96447 * 180.25124 * 12 11 10 38 38 H 1.09000 * 109.47281 * 29.98668 * 14 13 12 39 39 H 1.09007 * 109.46992 * 149.97504 * 14 13 12 40 40 H 0.96994 * 119.99791 * 180.02562 * 18 17 15 41 41 H 1.07999 * 119.96462 * 180.02562 * 23 13 12 42 42 H 1.07995 * 120.03274 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0675 1.4325 0.0000 4 6 2.0713 -0.7812 1.2179 5 8 3.2398 -1.4714 0.7239 6 6 2.8757 -1.9422 -0.5920 7 6 2.0714 -0.7814 -1.2180 8 1 2.7220 -0.1471 -1.8202 9 7 0.9682 -1.3006 -2.0300 10 6 1.1848 -1.6395 -3.3676 11 6 2.4443 -1.4794 -3.9311 12 6 2.6562 -1.8199 -5.2526 13 6 1.6136 -2.3099 -6.0177 14 6 1.8473 -2.6754 -7.4609 15 6 1.5884 -1.4732 -8.3319 16 1 1.2854 -0.5379 -7.8851 17 6 1.7385 -1.5675 -9.6993 18 7 1.5131 -0.5181 -10.4593 19 14 2.2633 -3.1851 -10.4720 20 1 1.0596 -3.9915 -10.7981 21 1 3.0294 -2.9144 -11.7150 22 1 3.1180 -3.9355 -9.5173 23 6 0.3572 -2.4656 -5.4613 24 6 0.1399 -2.1325 -4.1388 25 1 -0.3633 0.4947 0.9008 26 1 -0.3633 0.5327 -0.8788 27 1 -0.3633 -1.0275 -0.0220 28 1 3.1570 1.4117 -0.0218 29 1 1.6963 1.9597 -0.8788 30 1 1.7319 1.9464 0.9008 31 1 1.3285 -1.4970 1.5702 32 1 2.3464 -0.0939 2.0178 33 1 3.7689 -2.1468 -1.1825 34 1 2.2564 -2.8360 -0.5173 35 1 0.0872 -1.4091 -1.6387 36 1 3.2579 -1.0929 -3.3353 37 1 3.6362 -1.6995 -5.6902 38 1 2.8789 -3.0026 -7.5904 39 1 1.1719 -3.4824 -7.7453 40 1 1.6182 -0.5845 -11.4213 41 1 -0.4548 -2.8490 -6.0615 42 1 -0.8417 -2.2539 -3.7051 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926891886.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:11 Heat of formation + Delta-G solvation = -40.915801 kcal Electronic energy + Delta-G solvation = -21058.415695 eV Core-core repulsion = 18002.167684 eV Total energy + Delta-G solvation = -3056.248011 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.39430 -39.95395 -36.84395 -35.42530 -34.55004 -32.36071 -31.71453 -29.86343 -28.66106 -27.56763 -26.99671 -24.55391 -23.85844 -22.97728 -21.50609 -20.10983 -18.93015 -18.47968 -17.43498 -16.86321 -16.63351 -16.23738 -16.13379 -15.75588 -15.35142 -14.92172 -14.54439 -14.33376 -14.18037 -14.16001 -13.90233 -13.68070 -13.44108 -13.37056 -13.01970 -12.88437 -12.58416 -12.40368 -12.14427 -11.86051 -11.82930 -11.72310 -11.65573 -11.51240 -11.45787 -10.85195 -10.76274 -10.50048 -9.69881 -8.28342 -8.09653 -6.31495 0.65849 0.85326 1.37131 1.39132 1.51574 2.37441 2.41023 3.06841 3.08791 3.11116 3.36559 3.71079 3.83598 4.03904 4.09387 4.18855 4.24295 4.27428 4.43900 4.60436 4.65442 4.69620 4.73580 4.75130 4.77017 4.81230 4.92630 4.94352 5.00952 5.06627 5.12297 5.16000 5.25961 5.30964 5.34160 5.50460 5.61230 5.68091 5.75636 6.03336 6.15489 6.31421 6.53563 6.75322 6.90450 7.31898 8.89372 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035589 B = 0.003436 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.580494 B = 8147.067390 C = 8262.117143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 C -0.136 4.136 4 C 0.050 3.950 5 O -0.391 6.391 6 C 0.031 3.969 7 C 0.128 3.872 8 H 0.083 0.917 9 N -0.731 5.731 10 C 0.198 3.802 11 C -0.196 4.196 12 C -0.089 4.089 13 C -0.121 4.121 14 C 0.027 3.973 15 C -0.517 4.517 16 H 0.026 0.974 17 C 0.005 3.995 18 N -0.952 5.952 19 Si 0.952 3.048 20 H -0.265 1.265 21 H -0.283 1.283 22 H -0.247 1.247 23 C -0.088 4.088 24 C -0.190 4.190 25 H 0.080 0.920 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.408 0.592 36 H 0.130 0.870 37 H 0.112 0.888 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.267 0.733 41 H 0.116 0.884 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.227 -1.725 25.798 25.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.100 4.100 3 C -0.193 4.193 4 C -0.026 4.026 5 O -0.310 6.310 6 C -0.048 4.048 7 C 0.021 3.979 8 H 0.101 0.899 9 N -0.367 5.367 10 C 0.096 3.904 11 C -0.218 4.218 12 C -0.108 4.108 13 C -0.123 4.123 14 C -0.010 4.010 15 C -0.555 4.555 16 H 0.044 0.956 17 C -0.192 4.192 18 N -0.593 5.593 19 Si 0.775 3.225 20 H -0.189 1.189 21 H -0.209 1.209 22 H -0.171 1.171 23 C -0.107 4.107 24 C -0.212 4.212 25 H 0.099 0.901 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.126 0.874 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.248 0.752 36 H 0.148 0.852 37 H 0.130 0.870 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.075 0.925 41 H 0.134 0.866 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.866 -1.625 25.838 25.903 hybrid contribution -0.237 -0.233 -1.143 1.190 sum -1.103 -1.858 24.694 24.789 Atomic orbital electron populations 1.21788 0.92272 1.02418 1.03342 1.22109 0.97613 0.96626 0.93697 1.21829 1.01021 0.93623 1.02828 1.23732 0.87611 0.95179 0.96096 1.89125 1.36398 1.74222 1.31212 1.23999 1.00105 0.96920 0.83763 1.22262 0.88945 0.94425 0.92248 0.89881 1.44700 1.12508 1.72490 1.07000 1.17707 0.93265 0.94217 0.85190 1.20690 0.96767 1.08818 0.95571 1.20878 0.98596 0.97536 0.93768 1.19923 0.94493 1.02125 0.95715 1.18543 0.96771 0.95367 0.90354 1.21262 1.45619 0.96905 0.91680 0.95608 1.26012 0.94878 1.00566 0.97736 1.70069 1.51533 1.32191 1.05486 0.85634 0.79455 0.79431 0.78009 1.18948 1.20863 1.17068 1.20892 0.96029 0.98843 0.94888 1.20666 0.98955 1.07584 0.94005 0.90138 0.92155 0.91608 0.92511 0.92782 0.90371 0.91065 0.87430 0.89094 0.91724 0.75177 0.85197 0.86952 0.95722 0.95687 0.92461 0.86555 0.84278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 7.15 71.98 0.51 -1.05 16 2 C -0.10 -1.39 1.05 -51.16 -0.05 -1.45 16 3 C -0.14 -1.83 8.29 71.98 0.60 -1.24 16 4 C 0.05 0.69 6.73 72.49 0.49 1.18 16 5 O -0.39 -7.96 11.65 -148.98 -1.74 -9.70 16 6 C 0.03 0.60 7.35 72.49 0.53 1.13 16 7 C 0.13 2.42 2.69 46.01 0.12 2.54 16 8 H 0.08 1.78 6.19 -2.39 -0.01 1.77 16 9 N -0.73 -15.18 4.88 -314.19 -1.53 -16.72 16 10 C 0.20 5.68 6.65 38.22 0.25 5.94 16 11 C -0.20 -6.28 9.22 22.40 0.21 -6.07 16 12 C -0.09 -3.47 9.69 22.25 0.22 -3.26 16 13 C -0.12 -5.24 5.07 -19.84 -0.10 -5.34 16 14 C 0.03 1.33 4.17 29.10 0.12 1.45 16 15 C -0.52 -30.90 9.65 25.60 0.25 -30.65 16 16 H 0.03 1.72 7.98 -2.91 -0.02 1.70 16 17 C 0.00 0.27 5.47 84.65 0.46 0.73 16 18 N -0.95 -60.90 13.96 21.45 0.30 -60.61 16 19 Si 0.95 44.98 27.47 68.60 1.88 46.87 16 20 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 22 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 23 C -0.09 -3.35 9.69 22.25 0.22 -3.14 16 24 C -0.19 -5.84 9.90 22.40 0.22 -5.62 16 25 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.06 0.81 7.94 -2.39 -0.02 0.79 16 27 H 0.07 0.65 6.80 -2.39 -0.02 0.64 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.84 7.87 -2.38 -0.02 0.82 16 32 H 0.11 1.16 7.87 -2.39 -0.02 1.14 16 33 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.06 1.26 8.06 -2.39 -0.02 1.24 16 35 H 0.41 6.89 5.79 -92.71 -0.54 6.35 16 36 H 0.13 3.56 6.28 -2.91 -0.02 3.54 16 37 H 0.11 4.32 8.06 -2.91 -0.02 4.30 16 38 H 0.02 1.19 7.14 -2.39 -0.02 1.18 16 39 H 0.02 1.19 7.51 -2.38 -0.02 1.17 16 40 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 41 H 0.12 4.32 8.06 -2.91 -0.02 4.29 16 42 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -70.02 334.13 3.37 -66.66 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.41 Total: 18.33 kcal Atomic # 6 Polarization: -48.88 SS G_CDS: 4.05 Total: -44.84 kcal Atomic # 7 Polarization: -76.09 SS G_CDS: -1.23 Total: -77.32 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: -1.74 Total: -9.70 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.87 kcal Total: -70.02 3.37 -66.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926891886.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.741 kcal (2) G-P(sol) polarization free energy of solvation -70.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds