Wall clock time and date at job start Mon Mar 30 2020 02:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47226 * 2 1 4 4 C 1.53011 * 109.47222 * 240.00379 * 2 1 3 5 5 C 1.52998 * 109.47525 * 120.00222 * 2 1 3 6 6 C 1.50698 * 109.46870 * 60.00060 * 5 2 1 7 7 O 1.21284 * 120.00445 * 0.02562 * 6 5 2 8 8 N 1.34780 * 120.00120 * 180.02562 * 6 5 2 9 9 C 1.39929 * 120.00330 * 185.27166 * 8 6 5 10 10 C 1.38875 * 120.06682 * 33.29472 * 9 8 6 11 11 C 1.38105 * 119.92705 * 180.02562 * 10 9 8 12 12 C 1.38282 * 120.07521 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.93398 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47137 * 89.99687 * 13 12 11 15 15 H 1.08001 * 120.00382 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99666 * 180.27320 * 14 13 12 17 17 N 1.31517 * 119.99801 * 179.72616 * 16 14 13 18 18 Si 1.86796 * 120.00366 * 359.73117 * 16 14 13 19 19 H 1.48495 * 109.47512 * 89.99602 * 18 16 14 20 20 H 1.48501 * 109.47244 * 209.99900 * 18 16 14 21 21 H 1.48504 * 109.46718 * 329.99446 * 18 16 14 22 22 C 1.38291 * 120.13592 * 0.25464 * 12 11 10 23 23 C 1.38108 * 120.06898 * 359.49209 * 22 12 11 24 24 H 1.08989 * 109.47471 * 299.99511 * 1 2 3 25 25 H 1.09004 * 109.47180 * 59.99911 * 1 2 3 26 26 H 1.09004 * 109.46791 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47461 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47247 * 300.00385 * 3 2 1 29 29 H 1.09003 * 109.46615 * 59.99879 * 3 2 1 30 30 H 1.08997 * 109.46836 * 299.99893 * 4 2 1 31 31 H 1.09001 * 109.46565 * 59.99874 * 4 2 1 32 32 H 1.09004 * 109.46984 * 179.97438 * 4 2 1 33 33 H 1.09003 * 109.46894 * 300.00474 * 5 2 1 34 34 H 1.08999 * 109.47633 * 179.97438 * 5 2 1 35 35 H 0.97001 * 119.99823 * 5.28307 * 8 6 5 36 36 H 1.08005 * 120.03647 * 359.97438 * 10 9 8 37 37 H 1.08005 * 119.96465 * 179.97438 * 11 10 9 38 38 H 1.08998 * 109.46787 * 329.99573 * 13 12 11 39 39 H 1.08997 * 109.47216 * 210.00042 * 13 12 11 40 40 H 0.97000 * 120.00409 * 179.97438 * 17 16 14 41 41 H 1.08001 * 119.96082 * 179.74147 * 22 12 11 42 42 H 1.07997 * 120.03354 * 180.25512 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0401 -0.7213 1.2492 6 6 1.5378 -2.1421 1.2491 7 8 0.8408 -2.5389 0.3392 8 7 1.8630 -2.9719 2.2601 9 6 1.4902 -4.3196 2.2066 10 6 1.4387 -4.9794 0.9857 11 6 1.0700 -6.3093 0.9362 12 6 0.7516 -6.9840 2.1006 13 6 0.3491 -8.4350 2.0429 14 6 1.5748 -9.3019 2.1733 15 1 2.5480 -8.8476 2.2871 16 6 1.4544 -10.6751 2.1423 17 7 2.5247 -11.4316 2.2507 18 14 -0.2288 -11.4610 1.9461 19 1 -0.5212 -11.6512 0.5027 20 1 -0.2432 -12.7781 2.6318 21 1 -1.2603 -10.5783 2.5480 22 6 0.7963 -6.3282 3.3173 23 6 1.1694 -4.9997 3.3741 24 1 -0.3634 0.5137 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6767 -1.7488 -1.2494 31 1 1.6766 -0.2073 -2.1393 32 1 3.1301 -0.7208 -1.2496 33 1 1.6767 -0.2075 2.1392 34 1 3.1300 -0.7217 1.2490 35 1 2.3553 -2.6349 3.0249 36 1 1.6860 -4.4527 0.0758 37 1 1.0293 -6.8229 -0.0130 38 1 -0.1403 -8.6386 1.0905 39 1 -0.3393 -8.6538 2.8591 40 1 2.4400 -12.3977 2.2292 41 1 0.5431 -6.8567 4.2245 42 1 1.2081 -4.4892 4.3251 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928402793.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:45 Heat of formation + Delta-G solvation = -29.898829 kcal Electronic energy + Delta-G solvation = -20762.790003 eV Core-core repulsion = 17707.019724 eV Total energy + Delta-G solvation = -3055.770279 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.65011 -38.63488 -36.71036 -34.84058 -32.97295 -31.00963 -30.36253 -28.86456 -27.39517 -27.31175 -26.63338 -23.08895 -22.40291 -20.95566 -19.97844 -19.15790 -17.38871 -16.94194 -16.75921 -15.68131 -15.01293 -14.78101 -14.67692 -14.52839 -14.13495 -14.00507 -13.39456 -12.94035 -12.86696 -12.64693 -12.45463 -12.28337 -12.26348 -11.94124 -11.75185 -11.55130 -11.37506 -11.23804 -10.95652 -10.84715 -10.78022 -10.46356 -10.17655 -10.04083 -9.71324 -9.35736 -9.29588 -8.57580 -8.34078 -7.40505 -6.06746 -4.05678 1.80022 2.00556 2.69946 3.11550 3.29864 3.37455 3.40611 4.38658 4.42488 4.43621 4.57622 4.61041 4.98106 5.21210 5.24959 5.26227 5.29359 5.39086 5.42655 5.51828 5.57097 5.70760 5.73530 5.83943 5.90598 5.93567 5.99207 6.01215 6.08314 6.12181 6.34899 6.41990 6.56914 6.73301 6.84128 6.96261 7.05038 7.08143 7.49032 7.59466 7.61756 7.72547 8.20006 8.50594 8.98654 9.53754 11.06228 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.040993 B = 0.003195 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.872500 B = 8762.442236 C = 8895.179033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.051 4.051 3 C -0.142 4.142 4 C -0.155 4.155 5 C -0.132 4.132 6 C 0.509 3.491 7 O -0.512 6.512 8 N -0.671 5.671 9 C 0.109 3.891 10 C -0.117 4.117 11 C -0.105 4.105 12 C -0.039 4.039 13 C 0.014 3.986 14 C -0.512 4.512 15 H 0.074 0.926 16 C 0.068 3.932 17 N -0.901 5.901 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.264 1.264 22 C -0.105 4.105 23 C -0.144 4.144 24 H 0.045 0.955 25 H 0.050 0.950 26 H 0.085 0.915 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.405 0.595 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.023 0.977 39 H 0.028 0.972 40 H 0.264 0.736 41 H 0.122 0.878 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.314 24.269 -0.787 24.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.051 4.051 3 C -0.199 4.199 4 C -0.212 4.212 5 C -0.172 4.172 6 C 0.297 3.703 7 O -0.388 6.388 8 N -0.316 5.316 9 C 0.017 3.983 10 C -0.136 4.136 11 C -0.124 4.124 12 C -0.039 4.039 13 C -0.023 4.023 14 C -0.550 4.550 15 H 0.092 0.908 16 C -0.133 4.133 17 N -0.539 5.539 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.124 4.124 23 C -0.164 4.164 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.104 0.896 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.240 0.760 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.042 0.958 39 H 0.046 0.954 40 H 0.074 0.926 41 H 0.140 0.860 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.731 23.851 -1.460 23.958 hybrid contribution -0.362 -0.336 0.411 0.643 sum -2.093 23.515 -1.049 23.632 Atomic orbital electron populations 1.22118 0.94018 1.04284 1.00744 1.20269 0.96451 0.94418 0.94011 1.21898 1.00838 0.95326 1.01854 1.22128 1.00009 1.03004 0.96084 1.21801 1.02436 0.92283 1.00668 1.20790 0.79994 0.87665 0.81845 1.90607 1.36087 1.77000 1.35084 1.43523 1.56890 1.08041 1.23138 1.17547 1.03166 0.82882 0.94714 1.20968 1.01680 0.94392 0.96607 1.20968 0.99539 0.93188 0.98701 1.20290 0.94674 0.96811 0.92155 1.18803 0.97733 0.88430 0.97321 1.20942 0.93316 0.90336 1.50399 0.90824 1.25004 0.96557 0.97186 0.94554 1.69901 1.28555 1.04894 1.50584 0.86801 0.85155 0.78840 0.78707 1.20153 1.21285 1.18903 1.20854 1.00274 0.93193 0.98080 1.20737 1.03698 0.95702 0.96293 0.93614 0.93080 0.89627 0.92691 0.92368 0.92749 0.89632 0.93057 0.93505 0.88948 0.88771 0.76025 0.85722 0.86046 0.95834 0.95420 0.92620 0.85967 0.86724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.18 37.16 0.30 -1.22 16 2 C -0.05 -0.45 0.77 -154.51 -0.12 -0.57 16 3 C -0.14 -0.96 8.47 37.16 0.31 -0.65 16 4 C -0.16 -1.56 8.18 37.16 0.30 -1.25 16 5 C -0.13 -1.06 4.77 -27.88 -0.13 -1.20 16 6 C 0.51 6.05 6.98 -10.98 -0.08 5.97 16 7 O -0.51 -7.75 9.03 5.55 0.05 -7.70 16 8 N -0.67 -7.96 5.34 -9.86 -0.05 -8.01 16 9 C 0.11 1.74 6.28 -83.69 -0.53 1.22 16 10 C -0.12 -2.09 8.66 -39.39 -0.34 -2.43 16 11 C -0.11 -2.10 9.69 -39.61 -0.38 -2.48 16 12 C -0.04 -0.83 5.07 -104.59 -0.53 -1.36 16 13 C 0.01 0.34 4.17 -29.04 -0.12 0.22 16 14 C -0.51 -14.57 9.65 -34.44 -0.33 -14.90 16 15 H 0.07 2.29 7.98 -52.49 -0.42 1.87 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 17 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 18 Si 0.88 21.48 27.46 -169.99 -4.67 16.81 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 21 H -0.26 -6.19 6.55 56.52 0.37 -5.82 16 22 C -0.11 -1.98 9.69 -39.61 -0.38 -2.37 16 23 C -0.14 -2.30 9.96 -39.40 -0.39 -2.69 16 24 H 0.04 0.40 8.14 -51.94 -0.42 -0.02 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.09 1.08 5.51 -51.93 -0.29 0.79 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 1.08 5.51 -51.93 -0.29 0.80 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.40 3.37 8.82 -40.82 -0.36 3.01 16 36 H 0.12 2.19 6.41 -52.48 -0.34 1.85 16 37 H 0.12 2.35 8.06 -52.48 -0.42 1.93 16 38 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16 39 H 0.03 0.66 7.15 -51.93 -0.37 0.29 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.12 2.18 8.06 -52.49 -0.42 1.75 16 42 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 337.19 15.07 5.08 5.08 Total: -1.00 -32.18 337.19 -8.02 -40.20 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -6.69 Total: 2.32 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -2.51 Total: -21.82 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.72 Total: -34.89 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: 0.05 Total: -7.70 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.18 -8.02 -40.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928402793.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.303 kcal (2) G-P(sol) polarization free energy of solvation -32.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds