Wall clock time and date at job start Mon Mar 30 2020 02:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47226 * 2 1 4 4 C 1.53011 * 109.47222 * 240.00379 * 2 1 3 5 5 C 1.52998 * 109.47525 * 120.00222 * 2 1 3 6 6 C 1.50698 * 109.46870 * 60.00060 * 5 2 1 7 7 O 1.21284 * 120.00445 * 0.02562 * 6 5 2 8 8 N 1.34780 * 120.00120 * 180.02562 * 6 5 2 9 9 C 1.39929 * 120.00330 * 185.27166 * 8 6 5 10 10 C 1.38875 * 120.06682 * 33.29472 * 9 8 6 11 11 C 1.38105 * 119.92705 * 180.02562 * 10 9 8 12 12 C 1.38282 * 120.07521 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.93398 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47137 * 89.99687 * 13 12 11 15 15 H 1.08001 * 120.00382 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99666 * 180.27320 * 14 13 12 17 17 N 1.31517 * 119.99801 * 179.72616 * 16 14 13 18 18 Si 1.86796 * 120.00366 * 359.73117 * 16 14 13 19 19 H 1.48495 * 109.47512 * 89.99602 * 18 16 14 20 20 H 1.48501 * 109.47244 * 209.99900 * 18 16 14 21 21 H 1.48504 * 109.46718 * 329.99446 * 18 16 14 22 22 C 1.38291 * 120.13592 * 0.25464 * 12 11 10 23 23 C 1.38108 * 120.06898 * 359.49209 * 22 12 11 24 24 H 1.08989 * 109.47471 * 299.99511 * 1 2 3 25 25 H 1.09004 * 109.47180 * 59.99911 * 1 2 3 26 26 H 1.09004 * 109.46791 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47461 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47247 * 300.00385 * 3 2 1 29 29 H 1.09003 * 109.46615 * 59.99879 * 3 2 1 30 30 H 1.08997 * 109.46836 * 299.99893 * 4 2 1 31 31 H 1.09001 * 109.46565 * 59.99874 * 4 2 1 32 32 H 1.09004 * 109.46984 * 179.97438 * 4 2 1 33 33 H 1.09003 * 109.46894 * 300.00474 * 5 2 1 34 34 H 1.08999 * 109.47633 * 179.97438 * 5 2 1 35 35 H 0.97001 * 119.99823 * 5.28307 * 8 6 5 36 36 H 1.08005 * 120.03647 * 359.97438 * 10 9 8 37 37 H 1.08005 * 119.96465 * 179.97438 * 11 10 9 38 38 H 1.08998 * 109.46787 * 329.99573 * 13 12 11 39 39 H 1.08997 * 109.47216 * 210.00042 * 13 12 11 40 40 H 0.97000 * 120.00409 * 179.97438 * 17 16 14 41 41 H 1.08001 * 119.96082 * 179.74147 * 22 12 11 42 42 H 1.07997 * 120.03354 * 180.25512 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0401 -0.7213 1.2492 6 6 1.5378 -2.1421 1.2491 7 8 0.8408 -2.5389 0.3392 8 7 1.8630 -2.9719 2.2601 9 6 1.4902 -4.3196 2.2066 10 6 1.4387 -4.9794 0.9857 11 6 1.0700 -6.3093 0.9362 12 6 0.7516 -6.9840 2.1006 13 6 0.3491 -8.4350 2.0429 14 6 1.5748 -9.3019 2.1733 15 1 2.5480 -8.8476 2.2871 16 6 1.4544 -10.6751 2.1423 17 7 2.5247 -11.4316 2.2507 18 14 -0.2288 -11.4610 1.9461 19 1 -0.5212 -11.6512 0.5027 20 1 -0.2432 -12.7781 2.6318 21 1 -1.2603 -10.5783 2.5480 22 6 0.7963 -6.3282 3.3173 23 6 1.1694 -4.9997 3.3741 24 1 -0.3634 0.5137 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6767 -1.7488 -1.2494 31 1 1.6766 -0.2073 -2.1393 32 1 3.1301 -0.7208 -1.2496 33 1 1.6767 -0.2075 2.1392 34 1 3.1300 -0.7217 1.2490 35 1 2.3553 -2.6349 3.0249 36 1 1.6860 -4.4527 0.0758 37 1 1.0293 -6.8229 -0.0130 38 1 -0.1403 -8.6386 1.0905 39 1 -0.3393 -8.6538 2.8591 40 1 2.4400 -12.3977 2.2292 41 1 0.5431 -6.8567 4.2245 42 1 1.2081 -4.4892 4.3251 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928402793.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:44 Heat of formation + Delta-G solvation = -48.920214 kcal Electronic energy + Delta-G solvation = -20763.614832 eV Core-core repulsion = 17707.019724 eV Total energy + Delta-G solvation = -3056.595108 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.67578 -39.89719 -37.60925 -36.08745 -34.91984 -32.69249 -31.78177 -29.97328 -28.11793 -28.08482 -27.98823 -24.77515 -23.83504 -22.30954 -21.29372 -19.93912 -18.96694 -18.44736 -17.96037 -16.78862 -16.55958 -15.97266 -15.76625 -15.55493 -15.31878 -15.14431 -14.84995 -14.41321 -14.29021 -13.97535 -13.73402 -13.54478 -13.30334 -12.96204 -12.91844 -12.65851 -12.50563 -12.36901 -12.14452 -11.98670 -11.82036 -11.78008 -11.63745 -11.55318 -11.50965 -10.93434 -10.78902 -10.42050 -9.76119 -8.79901 -8.29922 -6.34757 0.44229 0.56746 1.36817 1.37697 1.50128 1.70067 2.15298 2.35338 2.98350 3.04284 3.67935 3.83749 3.96144 4.05702 4.14154 4.28900 4.31195 4.57618 4.62065 4.62852 4.67187 4.68452 4.76610 4.87657 4.88339 5.01038 5.04408 5.06550 5.11445 5.19485 5.25633 5.29323 5.38334 5.43114 5.46309 5.55135 5.55731 5.59590 5.73829 6.00582 6.17404 6.29587 6.55240 6.71326 7.28122 7.28762 8.86546 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.040993 B = 0.003195 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.872500 B = 8762.442236 C = 8895.179033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.052 4.052 3 C -0.136 4.136 4 C -0.155 4.155 5 C -0.124 4.124 6 C 0.503 3.497 7 O -0.546 6.546 8 N -0.662 5.662 9 C 0.124 3.876 10 C -0.127 4.127 11 C -0.120 4.120 12 C -0.076 4.076 13 C 0.021 3.979 14 C -0.518 4.518 15 H 0.029 0.971 16 C 0.007 3.993 17 N -0.949 5.949 18 Si 0.950 3.050 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.245 1.245 22 C -0.113 4.113 23 C -0.134 4.134 24 H 0.058 0.942 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.426 0.574 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.024 0.976 39 H 0.034 0.966 40 H 0.268 0.732 41 H 0.129 0.871 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.976 27.088 0.498 27.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.052 4.052 3 C -0.194 4.194 4 C -0.212 4.212 5 C -0.163 4.163 6 C 0.294 3.706 7 O -0.424 6.424 8 N -0.308 5.308 9 C 0.030 3.970 10 C -0.147 4.147 11 C -0.139 4.139 12 C -0.077 4.077 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.047 0.953 16 C -0.190 4.190 17 N -0.590 5.590 18 Si 0.773 3.227 19 H -0.193 1.193 20 H -0.207 1.207 21 H -0.169 1.169 22 C -0.132 4.132 23 C -0.154 4.154 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.140 0.860 34 H 0.136 0.864 35 H 0.265 0.735 36 H 0.142 0.858 37 H 0.130 0.870 38 H 0.042 0.958 39 H 0.052 0.948 40 H 0.077 0.923 41 H 0.147 0.853 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.378 26.719 -0.157 26.825 hybrid contribution -0.067 -1.065 -0.025 1.067 sum -2.445 25.654 -0.182 25.771 Atomic orbital electron populations 1.22070 0.95137 1.02381 1.01410 1.20298 0.95548 0.95782 0.93621 1.21842 1.01490 0.93512 1.02513 1.22096 1.00516 1.01391 0.97207 1.21872 1.03764 0.89204 1.01456 1.21618 0.79135 0.89031 0.80850 1.90630 1.37546 1.77882 1.36320 1.43517 1.56872 1.06216 1.24241 1.17652 1.00848 0.84672 0.93842 1.21005 1.02167 0.93699 0.97819 1.20966 1.00514 0.94269 0.98160 1.20156 0.97938 0.95752 0.93824 1.18639 0.95768 0.89854 0.97332 1.21168 0.93300 0.91225 1.49917 0.95301 1.25978 1.01088 0.97774 0.94117 1.70055 1.31315 1.05407 1.52195 0.85658 0.79912 0.77978 0.79148 1.19303 1.20653 1.16851 1.21031 1.00287 0.94600 0.97259 1.21062 1.01786 0.94553 0.98019 0.92300 0.93104 0.92695 0.91606 0.92539 0.91357 0.92647 0.93045 0.92590 0.85968 0.86368 0.73539 0.85809 0.86952 0.95757 0.94791 0.92350 0.85289 0.82510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.18 71.98 0.59 -2.21 16 2 C -0.05 -0.78 0.77 -52.18 -0.04 -0.82 16 3 C -0.14 -1.37 8.47 71.98 0.61 -0.76 16 4 C -0.15 -2.95 8.18 71.99 0.59 -2.36 16 5 C -0.12 -1.54 4.77 29.85 0.14 -1.39 16 6 C 0.50 10.87 6.98 87.66 0.61 11.48 16 7 O -0.55 -16.32 9.03 -3.04 -0.03 -16.35 16 8 N -0.66 -13.75 5.34 -303.50 -1.62 -15.37 16 9 C 0.12 3.73 6.28 38.15 0.24 3.97 16 10 C -0.13 -4.59 8.66 22.39 0.19 -4.39 16 11 C -0.12 -4.97 9.69 22.25 0.22 -4.76 16 12 C -0.08 -3.31 5.07 -19.84 -0.10 -3.41 16 13 C 0.02 1.04 4.17 29.10 0.12 1.17 16 14 C -0.52 -30.61 9.65 25.60 0.25 -30.36 16 15 H 0.03 1.90 7.98 -2.91 -0.02 1.88 16 16 C 0.01 0.44 5.47 84.65 0.46 0.90 16 17 N -0.95 -60.15 13.96 21.45 0.30 -59.85 16 18 Si 0.95 44.64 27.46 68.60 1.88 46.52 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 21 H -0.25 -10.66 6.55 99.48 0.65 -10.01 16 22 C -0.11 -4.18 9.69 22.25 0.22 -3.97 16 23 C -0.13 -3.96 9.96 22.39 0.22 -3.73 16 24 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 26 H 0.05 1.37 5.51 -2.38 -0.01 1.36 16 27 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.05 1.42 5.51 -2.39 -0.01 1.40 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.43 5.29 8.82 -92.71 -0.82 4.47 16 36 H 0.12 4.45 6.41 -2.91 -0.02 4.44 16 37 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 38 H 0.02 1.17 7.51 -2.39 -0.02 1.15 16 39 H 0.03 1.60 7.15 -2.39 -0.02 1.58 16 40 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 41 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 42 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -73.73 337.19 4.98 -68.75 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.13 Total: 16.96 kcal Atomic # 6 Polarization: -44.97 SS G_CDS: 4.32 Total: -40.65 kcal Atomic # 7 Polarization: -73.90 SS G_CDS: -1.32 Total: -75.23 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.03 Total: -16.35 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.52 kcal Total: -73.73 4.98 -68.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928402793.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.829 kcal (2) G-P(sol) polarization free energy of solvation -73.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds