Wall clock time and date at job start Mon Mar 30 2020 02:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47159 * 2 1 4 4 C 1.53002 * 109.46880 * 304.33868 * 3 2 1 5 5 C 1.53004 * 109.47437 * 294.71195 * 4 3 2 6 6 C 1.50696 * 109.47466 * 64.34029 * 3 2 1 7 7 O 1.21287 * 120.00217 * 240.00294 * 6 3 2 8 8 N 1.34776 * 119.99787 * 59.99998 * 6 3 2 9 9 C 1.39926 * 119.99834 * 184.85841 * 8 6 3 10 10 C 1.38877 * 120.07397 * 324.76584 * 9 8 6 11 11 C 1.38112 * 119.93367 * 180.02562 * 10 9 8 12 12 C 1.38277 * 120.06562 * 359.97438 * 11 10 9 13 13 C 1.50704 * 119.92451 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47489 * 90.00150 * 13 12 11 15 15 H 1.08002 * 119.99520 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00321 * 180.27351 * 14 13 12 17 17 N 1.31514 * 120.00082 * 359.72276 * 16 14 13 18 18 Si 1.86804 * 119.99996 * 179.72337 * 16 14 13 19 19 H 1.48496 * 109.46922 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46908 * 120.00214 * 18 16 14 21 21 H 1.48501 * 109.46775 * 239.99836 * 18 16 14 22 22 C 1.38284 * 120.14712 * 0.25595 * 12 11 10 23 23 C 1.38113 * 120.06721 * 359.48540 * 22 12 11 24 24 H 1.08997 * 109.47248 * 305.49041 * 1 2 3 25 25 H 1.09010 * 109.46675 * 65.48794 * 1 2 3 26 26 H 1.08997 * 109.47339 * 185.48135 * 1 2 3 27 27 H 1.08994 * 109.47189 * 239.98995 * 2 1 3 28 28 H 1.09004 * 109.46842 * 119.99478 * 2 1 3 29 29 H 1.09001 * 109.47294 * 184.34437 * 3 2 1 30 30 H 1.09000 * 109.47174 * 54.71818 * 4 3 2 31 31 H 1.09004 * 109.47192 * 174.71051 * 4 3 2 32 32 H 1.09001 * 109.46804 * 305.12072 * 5 4 3 33 33 H 1.09000 * 109.46922 * 65.11818 * 5 4 3 34 34 H 1.08996 * 109.47142 * 185.11907 * 5 4 3 35 35 H 0.96998 * 120.00360 * 4.86315 * 8 6 3 36 36 H 1.08010 * 120.03013 * 359.97438 * 10 9 8 37 37 H 1.07995 * 119.96495 * 179.97438 * 11 10 9 38 38 H 1.08997 * 109.47300 * 329.99881 * 13 12 11 39 39 H 1.09004 * 109.46960 * 210.00066 * 13 12 11 40 40 H 0.96998 * 120.00530 * 179.97438 * 17 16 14 41 41 H 1.08000 * 119.96714 * 179.74240 * 22 12 11 42 42 H 1.07993 * 120.03511 * 180.25485 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4428 2.1945 -1.1911 5 6 1.9675 1.5862 -2.4934 6 6 1.6275 2.1212 1.2806 7 8 0.9249 3.1092 1.2443 8 7 2.0392 1.6303 2.4664 9 6 1.5746 2.1980 3.6579 10 6 1.3433 3.5653 3.7335 11 6 0.8852 4.1227 4.9112 12 6 0.6565 3.3208 6.0142 13 6 0.1573 3.9324 7.2979 14 6 -1.3497 3.9341 7.3008 15 1 -1.8917 3.5327 6.4573 16 6 -2.0365 4.4535 8.3776 17 7 -1.3764 4.9426 9.4046 18 14 -3.9045 4.4625 8.3778 19 1 -4.4025 3.8603 7.1151 20 1 -4.4031 3.6742 9.5333 21 1 -4.3926 5.8609 8.4851 22 6 0.8904 1.9597 5.9438 23 6 1.3434 1.3954 4.7674 24 1 -0.3633 0.5966 0.8367 25 1 -0.3633 0.4264 -0.9352 26 1 -0.3634 -1.0229 0.0982 27 1 1.8934 -0.5140 -0.8898 28 1 1.8933 -0.5138 0.8901 29 1 3.1273 1.4434 -0.0778 30 1 0.3562 2.1135 -1.1641 31 1 1.7303 3.2446 -1.1389 32 1 3.0574 1.5847 -2.4804 33 1 1.6038 0.5632 -2.5889 34 1 1.6150 2.1776 -3.3384 35 1 2.6576 0.8835 2.4938 36 1 1.5221 4.1922 2.8723 37 1 0.7055 5.1859 4.9706 38 1 0.5218 4.9565 7.3783 39 1 0.5216 3.3496 8.1438 40 1 -1.8595 5.3084 10.1620 41 1 0.7148 1.3367 6.8083 42 1 1.5219 0.3318 4.7117 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928403592.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:49 Heat of formation + Delta-G solvation = -39.832991 kcal Electronic energy + Delta-G solvation = -20795.739243 eV Core-core repulsion = 17739.538186 eV Total energy + Delta-G solvation = -3056.201057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.57915 -38.42593 -36.28959 -34.86653 -32.99612 -31.46763 -30.46817 -30.26663 -27.98503 -26.30815 -23.75090 -23.43106 -22.35347 -21.61956 -20.16615 -19.34340 -17.51352 -16.73639 -16.28601 -16.12394 -15.41865 -14.98665 -14.61691 -14.20629 -14.04173 -13.65073 -13.35995 -13.17019 -13.03499 -12.78804 -12.53904 -12.29544 -12.02282 -11.86736 -11.62888 -11.50719 -11.32766 -11.22455 -10.86393 -10.78310 -10.75288 -10.56423 -10.33495 -10.01696 -9.62027 -9.37588 -9.21634 -8.40137 -8.26395 -7.36957 -6.01463 -4.05135 1.89964 2.08696 2.73031 3.16922 3.31727 3.39232 3.45427 4.38302 4.41298 4.47733 4.55895 4.63806 4.94325 4.98098 5.08980 5.19508 5.32712 5.40155 5.42553 5.44930 5.52673 5.62195 5.64360 5.80745 5.83609 5.94979 5.95838 6.02244 6.09646 6.15761 6.21506 6.22641 6.67576 6.82207 6.95240 7.18653 7.23209 7.53119 7.55746 7.73983 7.88751 7.94793 8.24264 8.35584 9.00698 9.58753 11.08172 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027934 B = 0.003469 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.105578 B = 8069.615854 C = 8341.631080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.115 4.115 3 C -0.107 4.107 4 C -0.110 4.110 5 C -0.152 4.152 6 C 0.513 3.487 7 O -0.520 6.520 8 N -0.669 5.669 9 C 0.102 3.898 10 C -0.117 4.117 11 C -0.110 4.110 12 C -0.042 4.042 13 C 0.048 3.952 14 C -0.510 4.510 15 H 0.058 0.942 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.894 3.106 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.110 4.110 23 C -0.143 4.143 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.403 0.597 36 H 0.128 0.872 37 H 0.121 0.879 38 H 0.029 0.971 39 H 0.028 0.972 40 H 0.261 0.739 41 H 0.121 0.879 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.662 -10.696 -19.648 24.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.152 4.152 3 C -0.128 4.128 4 C -0.147 4.147 5 C -0.209 4.209 6 C 0.300 3.700 7 O -0.395 6.395 8 N -0.314 5.314 9 C 0.010 3.990 10 C -0.137 4.137 11 C -0.129 4.129 12 C -0.042 4.042 13 C 0.011 3.989 14 C -0.548 4.548 15 H 0.076 0.924 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.722 3.278 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.128 4.128 23 C -0.163 4.163 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.114 0.886 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.238 0.762 36 H 0.145 0.855 37 H 0.139 0.861 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.071 0.929 41 H 0.139 0.861 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.120 -9.917 -19.562 23.753 hybrid contribution -0.747 -0.390 0.187 0.863 sum 8.372 -10.307 -19.376 23.489 Atomic orbital electron populations 1.21882 0.95174 1.01921 1.02653 1.21529 0.96987 0.94020 1.02687 1.21444 1.01981 0.96470 0.92939 1.21414 1.01576 0.99633 0.92111 1.21820 1.00968 1.00990 0.97149 1.20747 0.79828 0.84474 0.84937 1.90721 1.36626 1.25130 1.86979 1.43406 1.47275 1.36152 1.04538 1.17553 1.03500 0.92353 0.85626 1.21130 1.01215 0.93076 0.98296 1.21021 0.99555 1.00188 0.92111 1.20713 0.92606 0.93224 0.97689 1.18356 0.95988 0.96139 0.88437 1.21120 0.90542 1.39812 1.03313 0.92414 1.25011 0.98594 0.95276 0.95493 1.69965 1.35420 1.40770 1.07273 0.86489 0.85531 0.77743 0.78042 1.19647 1.20957 1.20929 1.20879 0.99768 0.95217 0.96961 1.20752 1.03915 0.98245 0.93423 0.92360 0.92023 0.92471 0.90621 0.91591 0.88573 0.90690 0.91113 0.92767 0.92528 0.92490 0.76171 0.85464 0.86148 0.95313 0.95331 0.92930 0.86069 0.86905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.16 37.16 0.34 -1.10 16 2 C -0.11 -0.84 5.31 -26.73 -0.14 -0.98 16 3 C -0.11 -0.94 2.50 -91.78 -0.23 -1.17 16 4 C -0.11 -1.00 4.45 -26.73 -0.12 -1.12 16 5 C -0.15 -1.01 9.55 37.16 0.35 -0.65 16 6 C 0.51 6.72 5.86 -10.99 -0.06 6.66 16 7 O -0.52 -9.04 13.35 5.55 0.07 -8.97 16 8 N -0.67 -8.42 5.16 -9.86 -0.05 -8.47 16 9 C 0.10 1.70 6.30 -83.69 -0.53 1.17 16 10 C -0.12 -2.22 8.70 -39.39 -0.34 -2.56 16 11 C -0.11 -2.30 9.69 -39.61 -0.38 -2.68 16 12 C -0.04 -0.93 5.07 -104.59 -0.53 -1.46 16 13 C 0.05 1.24 5.10 -29.03 -0.15 1.10 16 14 C -0.51 -14.58 9.09 -34.44 -0.31 -14.89 16 15 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 18 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 19 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 C -0.11 -2.14 9.69 -39.61 -0.38 -2.53 16 23 C -0.14 -2.37 9.97 -39.39 -0.39 -2.76 16 24 H 0.06 0.70 7.19 -51.93 -0.37 0.32 16 25 H 0.06 0.53 6.57 -51.92 -0.34 0.19 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.43 6.91 -51.93 -0.36 0.07 16 28 H 0.07 0.43 7.56 -51.93 -0.39 0.04 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.78 6.18 -51.93 -0.32 0.46 16 31 H 0.07 0.74 7.95 -51.93 -0.41 0.33 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.33 6.93 -51.93 -0.36 -0.03 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.40 3.58 8.35 -40.82 -0.34 3.24 16 36 H 0.13 2.40 6.23 -52.48 -0.33 2.07 16 37 H 0.12 2.47 8.06 -52.49 -0.42 2.04 16 38 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 39 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 42 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 341.36 15.07 5.14 5.14 Total: -1.00 -32.55 341.36 -8.66 -41.21 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.57 Total: 1.59 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -2.98 Total: -21.43 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.69 Total: -34.48 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.07 Total: -8.97 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.55 -8.66 -41.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928403592.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.379 kcal (2) G-P(sol) polarization free energy of solvation -32.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds