Wall clock time and date at job start Mon Mar 30 2020 02:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47171 * 2 1 4 4 C 1.53000 * 109.47496 * 120.00629 * 2 1 3 5 5 C 1.52998 * 109.47050 * 64.99410 * 4 2 1 6 6 C 1.50698 * 109.46870 * 180.02562 * 5 4 2 7 7 O 1.21284 * 120.00445 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00120 * 180.02562 * 6 5 4 9 9 C 1.39929 * 120.00330 * 185.27166 * 8 6 5 10 10 C 1.38871 * 120.06427 * 33.29173 * 9 8 6 11 11 C 1.38112 * 119.92493 * 180.02562 * 10 9 8 12 12 C 1.38282 * 120.07478 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.93398 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47137 * 89.99687 * 13 12 11 15 15 H 1.08000 * 120.00327 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99965 * 180.27849 * 14 13 12 17 17 N 1.31517 * 120.00103 * 179.72615 * 16 14 13 18 18 Si 1.86804 * 120.00090 * 359.72200 * 16 14 13 19 19 H 1.48505 * 109.47086 * 90.00274 * 18 16 14 20 20 H 1.48501 * 109.47435 * 210.00523 * 18 16 14 21 21 H 1.48504 * 109.46864 * 330.00276 * 18 16 14 22 22 C 1.38286 * 120.13848 * 0.24863 * 12 11 10 23 23 C 1.38122 * 120.06639 * 359.49448 * 22 12 11 24 24 H 1.09004 * 109.47007 * 60.00014 * 1 2 3 25 25 H 1.09004 * 109.47180 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47041 * 299.99726 * 1 2 3 27 27 H 1.09004 * 109.47041 * 240.00274 * 2 1 3 28 28 H 1.09002 * 109.46896 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.46964 * 300.00236 * 3 2 1 30 30 H 1.08996 * 109.46614 * 60.00229 * 3 2 1 31 31 H 1.09003 * 109.46615 * 305.00044 * 4 2 1 32 32 H 1.08995 * 109.47461 * 184.99942 * 4 2 1 33 33 H 1.09003 * 109.46894 * 60.00804 * 5 4 2 34 34 H 1.08999 * 109.47633 * 300.00097 * 5 4 2 35 35 H 0.97001 * 119.99823 * 5.28307 * 8 6 5 36 36 H 1.08002 * 120.04284 * 0.02562 * 10 9 8 37 37 H 1.08005 * 119.96508 * 179.97438 * 11 10 9 38 38 H 1.08998 * 109.46787 * 329.99573 * 13 12 11 39 39 H 1.08997 * 109.47216 * 210.00042 * 13 12 11 40 40 H 0.97005 * 119.99813 * 180.02562 * 17 16 14 41 41 H 1.07996 * 119.96599 * 179.74614 * 22 12 11 42 42 H 1.08006 * 120.03084 * 180.25302 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.6353 -2.1955 1.1878 6 6 2.1372 -2.9059 2.4184 7 8 2.7572 -2.2933 3.2618 8 7 1.8970 -4.2220 2.5819 9 6 2.2654 -4.8578 3.7727 10 6 2.2168 -4.1649 4.9752 11 6 2.5815 -4.7951 6.1488 12 6 2.9952 -6.1144 6.1273 13 6 3.3930 -6.7988 7.4096 14 6 2.1830 -7.4510 8.0273 15 1 1.2220 -7.3776 7.5398 16 6 2.3016 -8.1369 9.2174 17 7 1.2445 -8.7014 9.7592 18 14 3.9637 -8.2644 10.0603 19 1 4.1365 -7.1192 10.9899 20 1 4.0357 -9.5364 10.8232 21 1 5.0404 -8.2389 9.0379 22 6 3.0501 -6.8055 4.9307 23 6 2.6816 -6.1825 3.7543 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6055 -0.2619 2.1369 32 1 3.1264 -0.6445 1.2950 33 1 2.0699 -2.6550 0.3000 34 1 0.5490 -2.2725 1.1419 35 1 1.4690 -4.7285 1.8740 36 1 1.8942 -3.1343 4.9928 37 1 2.5444 -4.2567 7.0844 38 1 3.8026 -6.0633 8.1020 39 1 4.1464 -7.5575 7.1980 40 1 1.3279 -9.1837 10.5967 41 1 3.3775 -7.8345 4.9166 42 1 2.7208 -6.7240 2.8207 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928403991.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:53 Heat of formation + Delta-G solvation = -41.195633 kcal Electronic energy + Delta-G solvation = -20155.626142 eV Core-core repulsion = 17099.365996 eV Total energy + Delta-G solvation = -3056.260145 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.38760 -38.38264 -36.84276 -34.90302 -32.97511 -31.57119 -30.51234 -30.31994 -27.50172 -27.17379 -24.81211 -22.75858 -22.39831 -20.67110 -20.15313 -19.93292 -17.54614 -16.89665 -16.75484 -16.09362 -15.12613 -14.98597 -14.72121 -14.18159 -14.11185 -14.08928 -13.53664 -13.17691 -12.92341 -12.85510 -12.54685 -12.44905 -12.33688 -12.08739 -11.71028 -11.61587 -11.45362 -11.11466 -10.96332 -10.86437 -10.82180 -10.48497 -10.18566 -10.13539 -9.82778 -9.48644 -9.30427 -8.57194 -8.33843 -7.40595 -6.06336 -4.05228 1.80684 2.00944 2.71185 3.11266 3.30171 3.37708 3.40945 4.39533 4.42813 4.46032 4.47259 4.57162 4.79134 4.93227 5.09891 5.23077 5.25493 5.32157 5.37174 5.40637 5.50668 5.52351 5.58323 5.71196 5.75159 5.87247 5.88886 5.97596 6.03207 6.05566 6.11846 6.13067 6.56586 6.73408 6.82688 6.96629 7.05344 7.08121 7.48965 7.59588 7.62099 7.72880 8.18025 8.51013 8.99020 9.54147 11.06571 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.044058 B = 0.002772 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.368120 B =10097.475725 C =10188.468282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.148 4.148 4 C -0.100 4.100 5 C -0.140 4.140 6 C 0.506 3.494 7 O -0.522 6.522 8 N -0.671 5.671 9 C 0.109 3.891 10 C -0.117 4.117 11 C -0.105 4.105 12 C -0.039 4.039 13 C 0.014 3.986 14 C -0.512 4.512 15 H 0.074 0.926 16 C 0.068 3.932 17 N -0.900 5.900 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.265 1.265 22 C -0.105 4.105 23 C -0.144 4.144 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.406 0.594 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.024 0.976 39 H 0.028 0.972 40 H 0.264 0.736 41 H 0.123 0.877 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.271 14.237 -21.551 25.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.138 4.138 5 C -0.180 4.180 6 C 0.294 3.706 7 O -0.397 6.397 8 N -0.316 5.316 9 C 0.016 3.984 10 C -0.137 4.137 11 C -0.124 4.124 12 C -0.040 4.040 13 C -0.023 4.023 14 C -0.550 4.550 15 H 0.092 0.908 16 C -0.133 4.133 17 N -0.539 5.539 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.124 4.124 23 C -0.164 4.164 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.240 0.760 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.042 0.958 39 H 0.046 0.954 40 H 0.074 0.926 41 H 0.141 0.859 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.633 14.622 -20.819 25.449 hybrid contribution 0.436 -0.534 0.180 0.712 sum 1.069 14.088 -20.639 25.012 Atomic orbital electron populations 1.21927 0.95262 1.01830 1.01849 1.21149 0.95903 0.96428 0.98170 1.21828 1.01086 0.95831 1.01754 1.21420 1.01912 0.92397 0.98098 1.21757 1.02965 0.97148 0.96173 1.20880 0.79376 0.81742 0.88613 1.90729 1.38817 1.65713 1.44476 1.43493 1.60825 1.09841 1.17475 1.17556 1.02776 0.92731 0.85322 1.20974 1.01653 1.00157 0.90918 1.20971 0.99303 0.94792 0.97306 1.20294 0.94630 0.93043 0.95987 1.18805 0.97759 0.95441 0.90288 1.20938 0.94763 1.32703 1.06551 0.90824 1.25006 0.96507 0.94961 0.96855 1.69905 1.29072 1.35592 1.19339 0.86802 0.85046 0.77663 0.79982 1.20159 1.21283 1.18918 1.20858 1.00422 0.99689 0.91433 1.20738 1.03144 0.93915 0.98603 0.92806 0.92494 0.92516 0.91224 0.92616 0.92778 0.92548 0.90999 0.91087 0.88918 0.88553 0.75962 0.85782 0.86011 0.95821 0.95401 0.92632 0.85929 0.86681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 8.95 37.16 0.33 -0.57 16 2 C -0.10 -0.64 2.92 -90.62 -0.26 -0.90 16 3 C -0.15 -0.95 9.19 37.16 0.34 -0.61 16 4 C -0.10 -0.85 3.97 -26.73 -0.11 -0.96 16 5 C -0.14 -1.10 5.46 -27.88 -0.15 -1.26 16 6 C 0.51 6.32 7.57 -10.98 -0.08 6.24 16 7 O -0.52 -8.72 13.67 5.55 0.08 -8.65 16 8 N -0.67 -8.20 5.34 -9.86 -0.05 -8.25 16 9 C 0.11 1.78 6.28 -83.70 -0.53 1.25 16 10 C -0.12 -2.17 8.66 -39.39 -0.34 -2.51 16 11 C -0.11 -2.13 9.69 -39.61 -0.38 -2.51 16 12 C -0.04 -0.84 5.07 -104.59 -0.53 -1.37 16 13 C 0.01 0.34 4.17 -29.04 -0.12 0.22 16 14 C -0.51 -14.60 9.65 -34.44 -0.33 -14.93 16 15 H 0.07 2.30 7.98 -52.49 -0.42 1.88 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 17 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 18 Si 0.88 21.55 27.46 -169.99 -4.67 16.88 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.26 -6.22 6.55 56.52 0.37 -5.85 16 22 C -0.11 -2.00 9.69 -39.61 -0.38 -2.39 16 23 C -0.14 -2.32 9.96 -39.39 -0.39 -2.72 16 24 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 0.31 6.57 -51.93 -0.34 -0.03 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.10 0.60 6.57 -51.93 -0.34 0.26 16 35 H 0.41 3.41 8.82 -40.82 -0.36 3.05 16 36 H 0.12 2.27 6.42 -52.49 -0.34 1.93 16 37 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 38 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16 39 H 0.03 0.66 7.15 -51.93 -0.37 0.29 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.12 2.20 8.06 -52.49 -0.42 1.77 16 42 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 LS Contribution 344.57 15.07 5.19 5.19 Total: -1.00 -33.21 344.57 -8.51 -41.73 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.79 Total: 1.15 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -3.04 Total: -21.14 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.72 Total: -35.16 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.08 Total: -8.65 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.21 -8.51 -41.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928403991.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.530 kcal (2) G-P(sol) polarization free energy of solvation -33.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds