Wall clock time and date at job start Mon Mar 30 2020 02:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47248 * 2 1 4 4 C 1.53000 * 109.47338 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47050 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.46870 * 180.02562 * 5 4 3 7 7 O 1.21284 * 120.00445 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00120 * 180.02562 * 6 5 4 9 9 C 1.39929 * 120.00330 * 185.27166 * 8 6 5 10 10 C 1.38871 * 120.06427 * 33.29173 * 9 8 6 11 11 C 1.38112 * 119.92493 * 180.02562 * 10 9 8 12 12 C 1.38282 * 120.07478 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.93398 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47137 * 89.99687 * 13 12 11 15 15 H 1.08000 * 120.00327 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99965 * 180.27849 * 14 13 12 17 17 N 1.31517 * 120.00103 * 179.72615 * 16 14 13 18 18 Si 1.86804 * 120.00090 * 359.72200 * 16 14 13 19 19 H 1.48505 * 109.47086 * 90.00274 * 18 16 14 20 20 H 1.48501 * 109.47435 * 210.00523 * 18 16 14 21 21 H 1.48504 * 109.46864 * 330.00276 * 18 16 14 22 22 C 1.38286 * 120.13848 * 0.24863 * 12 11 10 23 23 C 1.38122 * 120.06639 * 359.49448 * 22 12 11 24 24 H 1.09002 * 109.47622 * 300.00278 * 1 2 3 25 25 H 1.09004 * 109.47164 * 60.00089 * 1 2 3 26 26 H 1.09004 * 109.47023 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47334 * 239.99408 * 2 1 3 28 28 H 1.09008 * 109.46685 * 119.99875 * 2 1 3 29 29 H 1.09003 * 109.46954 * 59.99910 * 3 2 1 30 30 H 1.08995 * 109.47074 * 299.99837 * 3 2 1 31 31 H 1.09003 * 109.46615 * 60.00384 * 4 3 2 32 32 H 1.08995 * 109.47461 * 300.00281 * 4 3 2 33 33 H 1.09003 * 109.46894 * 60.00804 * 5 4 3 34 34 H 1.08999 * 109.47633 * 300.00097 * 5 4 3 35 35 H 0.97001 * 119.99823 * 5.28307 * 8 6 5 36 36 H 1.08002 * 120.04284 * 0.02562 * 10 9 8 37 37 H 1.08005 * 119.96508 * 179.97438 * 11 10 9 38 38 H 1.08998 * 109.46787 * 329.99573 * 13 12 11 39 39 H 1.08997 * 109.47216 * 210.00042 * 13 12 11 40 40 H 0.97005 * 119.99813 * 180.02562 * 17 16 14 41 41 H 1.07996 * 119.96599 * 179.74614 * 22 12 11 42 42 H 1.08006 * 120.03084 * 180.25302 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.5869 2.8849 0.0000 7 8 6.1934 1.8346 0.0000 8 7 6.2609 4.0522 0.0000 9 6 7.6557 4.0547 -0.1113 10 6 8.2949 3.0828 -0.8698 11 6 9.6719 3.0877 -0.9773 12 6 10.4139 4.0588 -0.3303 13 6 11.9162 4.0609 -0.4493 14 6 12.3250 4.8956 -1.6355 15 1 11.5723 5.3769 -2.2423 16 6 13.6597 5.0407 -1.9492 17 7 14.0162 5.7648 -2.9876 18 14 14.9617 4.2088 -0.8993 19 1 15.2386 2.8524 -1.4366 20 1 16.2083 5.0155 -0.9252 21 1 14.4733 4.0973 0.4987 22 6 9.7808 5.0246 0.4303 23 6 8.4037 5.0283 0.5375 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9336 0.9286 -0.8892 32 1 3.9330 0.9288 0.8908 33 1 3.7163 3.3993 0.8896 34 1 3.7170 3.3983 -0.8904 35 1 5.7790 4.8904 0.0774 36 1 7.7160 2.3238 -1.3750 37 1 10.1697 2.3319 -1.5666 38 1 12.2713 3.0392 -0.5842 39 1 12.3519 4.4801 0.4576 40 1 14.9553 5.8665 -3.2085 41 1 10.3634 5.7793 0.9377 42 1 7.9096 5.7854 1.1283 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928404055.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:57 Heat of formation + Delta-G solvation = -44.622657 kcal Electronic energy + Delta-G solvation = -19885.568429 eV Core-core repulsion = 16829.159677 eV Total energy + Delta-G solvation = -3056.408752 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.36952 -38.32719 -36.30515 -34.90531 -33.02040 -32.49607 -30.78658 -30.35197 -28.03431 -26.59320 -23.55607 -22.40116 -22.33751 -21.29451 -20.45716 -19.92279 -17.51585 -16.87634 -16.75562 -16.38814 -15.36917 -14.95194 -14.60518 -14.30728 -14.09363 -13.81730 -13.60341 -13.46575 -13.14414 -12.87441 -12.49781 -12.44496 -12.19399 -12.02807 -11.67039 -11.47422 -11.32954 -11.24426 -11.13369 -10.84497 -10.80718 -10.48584 -10.18744 -10.13717 -9.83035 -9.48871 -9.30524 -8.57239 -8.34043 -7.40855 -6.06376 -4.05284 1.80360 2.00749 2.70705 3.10662 3.30125 3.37666 3.40894 4.39230 4.42758 4.43544 4.52228 4.58496 4.84038 4.86439 4.99673 5.21622 5.23797 5.25752 5.39292 5.41606 5.45944 5.51713 5.57370 5.68025 5.73832 5.87186 5.89667 5.97728 6.00021 6.05000 6.10889 6.12713 6.56403 6.73149 6.82417 6.96494 7.05243 7.07923 7.48579 7.59390 7.61934 7.72779 8.17499 8.50947 8.98960 9.54086 11.06505 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.047646 B = 0.002578 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.530085 B =10857.234553 C =11037.160093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.106 4.106 5 C -0.139 4.139 6 C 0.506 3.494 7 O -0.522 6.522 8 N -0.671 5.671 9 C 0.109 3.891 10 C -0.117 4.117 11 C -0.105 4.105 12 C -0.039 4.039 13 C 0.014 3.986 14 C -0.512 4.512 15 H 0.074 0.926 16 C 0.068 3.932 17 N -0.900 5.900 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.265 1.265 22 C -0.105 4.105 23 C -0.144 4.144 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.406 0.594 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.024 0.976 39 H 0.028 0.972 40 H 0.264 0.736 41 H 0.123 0.877 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.608 -5.648 7.693 26.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.144 4.144 5 C -0.179 4.179 6 C 0.294 3.706 7 O -0.397 6.397 8 N -0.316 5.316 9 C 0.016 3.984 10 C -0.137 4.137 11 C -0.124 4.124 12 C -0.040 4.040 13 C -0.023 4.023 14 C -0.550 4.550 15 H 0.092 0.908 16 C -0.133 4.133 17 N -0.539 5.539 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.124 4.124 23 C -0.164 4.164 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.241 0.759 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.042 0.958 39 H 0.046 0.954 40 H 0.074 0.926 41 H 0.141 0.859 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -24.072 -6.361 7.576 26.026 hybrid contribution 0.545 0.224 0.403 0.714 sum -23.527 -6.137 7.979 25.590 Atomic orbital electron populations 1.21782 0.95969 1.01568 1.01708 1.21529 0.95684 0.96879 1.02305 1.21636 0.95082 0.97023 1.02019 1.21371 0.94666 0.94534 1.03827 1.21699 0.91337 1.00410 1.04446 1.20873 0.90373 0.83512 0.75866 1.90730 1.70228 1.31149 1.47620 1.43493 1.05754 1.09305 1.73077 1.17555 0.81762 0.99064 1.00008 1.20973 0.94798 0.99076 0.98842 1.20973 0.92706 0.99200 0.99501 1.20298 0.97916 0.92609 0.93156 1.18806 0.87595 0.97645 0.98253 1.20940 0.93077 1.30257 1.10705 0.90818 1.25006 0.98474 0.94906 0.94940 1.69905 1.17048 1.39943 1.26994 0.86802 0.81276 0.79748 0.81667 1.20160 1.21280 1.18922 1.20859 0.93040 0.98788 0.99711 1.20739 0.94243 1.00003 1.01418 0.92823 0.92796 0.92838 0.91891 0.91937 0.91987 0.91929 0.91058 0.91112 0.88893 0.88719 0.75946 0.85781 0.86001 0.95813 0.95394 0.92634 0.85921 0.86674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16 2 C -0.13 -0.83 5.93 -26.73 -0.16 -0.98 16 3 C -0.12 -0.77 5.21 -26.73 -0.14 -0.91 16 4 C -0.11 -0.89 4.50 -26.73 -0.12 -1.01 16 5 C -0.14 -1.08 5.70 -27.88 -0.16 -1.24 16 6 C 0.51 6.31 7.57 -10.98 -0.08 6.22 16 7 O -0.52 -8.72 13.67 5.55 0.08 -8.64 16 8 N -0.67 -8.19 5.34 -9.86 -0.05 -8.24 16 9 C 0.11 1.77 6.28 -83.70 -0.53 1.25 16 10 C -0.12 -2.16 8.66 -39.39 -0.34 -2.50 16 11 C -0.11 -2.13 9.69 -39.61 -0.38 -2.52 16 12 C -0.04 -0.85 5.07 -104.59 -0.53 -1.38 16 13 C 0.01 0.34 4.17 -29.04 -0.12 0.22 16 14 C -0.51 -14.61 9.65 -34.44 -0.33 -14.94 16 15 H 0.07 2.30 7.98 -52.49 -0.42 1.88 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 17 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 18 Si 0.88 21.54 27.46 -169.99 -4.67 16.88 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.26 -6.22 6.55 56.52 0.37 -5.85 16 22 C -0.11 -2.00 9.69 -39.61 -0.38 -2.39 16 23 C -0.14 -2.33 9.96 -39.39 -0.39 -2.72 16 24 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.41 3.40 8.82 -40.82 -0.36 3.04 16 36 H 0.12 2.27 6.42 -52.49 -0.34 1.93 16 37 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 38 H 0.02 0.57 7.51 -51.93 -0.39 0.18 16 39 H 0.03 0.67 7.15 -51.93 -0.37 0.29 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 42 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 LS Contribution 348.50 15.07 5.25 5.25 Total: -1.00 -33.24 348.50 -8.98 -42.22 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.96 Total: 0.92 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -3.40 Total: -21.50 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.72 Total: -35.13 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.08 Total: -8.64 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.24 -8.98 -42.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928404055.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.403 kcal (2) G-P(sol) polarization free energy of solvation -33.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds