Wall clock time and date at job start Mon Mar 30 2020 02:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47248 * 2 1 4 4 C 1.53000 * 109.47338 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47050 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.46870 * 180.02562 * 5 4 3 7 7 O 1.21284 * 120.00445 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00120 * 180.02562 * 6 5 4 9 9 C 1.39929 * 120.00330 * 185.27166 * 8 6 5 10 10 C 1.38871 * 120.06427 * 33.29173 * 9 8 6 11 11 C 1.38112 * 119.92493 * 180.02562 * 10 9 8 12 12 C 1.38282 * 120.07478 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.93398 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47137 * 89.99687 * 13 12 11 15 15 H 1.08000 * 120.00327 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99965 * 180.27849 * 14 13 12 17 17 N 1.31517 * 120.00103 * 179.72615 * 16 14 13 18 18 Si 1.86804 * 120.00090 * 359.72200 * 16 14 13 19 19 H 1.48505 * 109.47086 * 90.00274 * 18 16 14 20 20 H 1.48501 * 109.47435 * 210.00523 * 18 16 14 21 21 H 1.48504 * 109.46864 * 330.00276 * 18 16 14 22 22 C 1.38286 * 120.13848 * 0.24863 * 12 11 10 23 23 C 1.38122 * 120.06639 * 359.49448 * 22 12 11 24 24 H 1.09002 * 109.47622 * 300.00278 * 1 2 3 25 25 H 1.09004 * 109.47164 * 60.00089 * 1 2 3 26 26 H 1.09004 * 109.47023 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47334 * 239.99408 * 2 1 3 28 28 H 1.09008 * 109.46685 * 119.99875 * 2 1 3 29 29 H 1.09003 * 109.46954 * 59.99910 * 3 2 1 30 30 H 1.08995 * 109.47074 * 299.99837 * 3 2 1 31 31 H 1.09003 * 109.46615 * 60.00384 * 4 3 2 32 32 H 1.08995 * 109.47461 * 300.00281 * 4 3 2 33 33 H 1.09003 * 109.46894 * 60.00804 * 5 4 3 34 34 H 1.08999 * 109.47633 * 300.00097 * 5 4 3 35 35 H 0.97001 * 119.99823 * 5.28307 * 8 6 5 36 36 H 1.08002 * 120.04284 * 0.02562 * 10 9 8 37 37 H 1.08005 * 119.96508 * 179.97438 * 11 10 9 38 38 H 1.08998 * 109.46787 * 329.99573 * 13 12 11 39 39 H 1.08997 * 109.47216 * 210.00042 * 13 12 11 40 40 H 0.97005 * 119.99813 * 180.02562 * 17 16 14 41 41 H 1.07996 * 119.96599 * 179.74614 * 22 12 11 42 42 H 1.08006 * 120.03084 * 180.25302 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.5869 2.8849 0.0000 7 8 6.1934 1.8346 0.0000 8 7 6.2609 4.0522 0.0000 9 6 7.6557 4.0547 -0.1113 10 6 8.2949 3.0828 -0.8698 11 6 9.6719 3.0877 -0.9773 12 6 10.4139 4.0588 -0.3303 13 6 11.9162 4.0609 -0.4493 14 6 12.3250 4.8956 -1.6355 15 1 11.5723 5.3769 -2.2423 16 6 13.6597 5.0407 -1.9492 17 7 14.0162 5.7648 -2.9876 18 14 14.9617 4.2088 -0.8993 19 1 15.2386 2.8524 -1.4366 20 1 16.2083 5.0155 -0.9252 21 1 14.4733 4.0973 0.4987 22 6 9.7808 5.0246 0.4303 23 6 8.4037 5.0283 0.5375 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9336 0.9286 -0.8892 32 1 3.9330 0.9288 0.8908 33 1 3.7163 3.3993 0.8896 34 1 3.7170 3.3983 -0.8904 35 1 5.7790 4.8904 0.0774 36 1 7.7160 2.3238 -1.3750 37 1 10.1697 2.3319 -1.5666 38 1 12.2713 3.0392 -0.5842 39 1 12.3519 4.4801 0.4576 40 1 14.9553 5.8665 -3.2085 41 1 10.3634 5.7793 0.9377 42 1 7.9096 5.7854 1.1283 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928404055.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:57 Heat of formation + Delta-G solvation = -64.184081 kcal Electronic energy + Delta-G solvation = -19886.416676 eV Core-core repulsion = 16829.159677 eV Total energy + Delta-G solvation = -3057.256999 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.50770 -39.66093 -36.94975 -36.21711 -34.92672 -33.31337 -32.40922 -31.79704 -29.24382 -27.76155 -24.96054 -23.88656 -23.39610 -21.97276 -21.70380 -21.09840 -18.96863 -18.66347 -17.93795 -17.10960 -16.72282 -16.22305 -15.95879 -15.61177 -15.42737 -14.86804 -14.52598 -14.43175 -14.32360 -14.13857 -14.03096 -13.87157 -13.51745 -13.25253 -12.80157 -12.59899 -12.50222 -12.25663 -11.88888 -11.84158 -11.82774 -11.80041 -11.66960 -11.60963 -11.35607 -11.09911 -10.79200 -10.74400 -9.78836 -8.83679 -8.29833 -6.34684 0.41457 0.54615 1.36835 1.37701 1.50115 1.65623 2.11906 2.35274 2.96194 3.04221 3.68718 3.86169 4.03194 4.04790 4.12189 4.29185 4.30656 4.33377 4.45703 4.58320 4.61995 4.66560 4.75384 4.78730 4.87828 4.97181 5.03135 5.05824 5.06879 5.12802 5.25727 5.26595 5.37694 5.39466 5.43715 5.46808 5.54566 5.55538 5.62575 5.98750 6.14975 6.28835 6.50825 6.71160 7.21023 7.28570 8.86455 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.047646 B = 0.002578 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.530085 B =10857.234553 C =11037.160093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C -0.112 4.112 4 C -0.105 4.105 5 C -0.127 4.127 6 C 0.502 3.498 7 O -0.569 6.569 8 N -0.659 5.659 9 C 0.120 3.880 10 C -0.129 4.129 11 C -0.121 4.121 12 C -0.076 4.076 13 C 0.021 3.979 14 C -0.518 4.518 15 H 0.029 0.971 16 C 0.007 3.993 17 N -0.948 5.948 18 Si 0.950 3.050 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.245 1.245 22 C -0.113 4.113 23 C -0.132 4.132 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.126 0.874 34 H 0.122 0.878 35 H 0.428 0.572 36 H 0.121 0.879 37 H 0.113 0.887 38 H 0.024 0.976 39 H 0.035 0.965 40 H 0.267 0.733 41 H 0.131 0.869 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.768 -5.098 9.712 28.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C -0.150 4.150 4 C -0.144 4.144 5 C -0.166 4.166 6 C 0.292 3.708 7 O -0.447 6.447 8 N -0.306 5.306 9 C 0.026 3.974 10 C -0.149 4.149 11 C -0.139 4.139 12 C -0.077 4.077 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.047 0.953 16 C -0.190 4.190 17 N -0.588 5.588 18 Si 0.773 3.227 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.169 1.169 22 C -0.131 4.131 23 C -0.152 4.152 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.267 0.733 36 H 0.139 0.861 37 H 0.131 0.869 38 H 0.043 0.957 39 H 0.053 0.947 40 H 0.076 0.924 41 H 0.149 0.851 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -26.286 -5.786 9.607 28.578 hybrid contribution 1.050 0.060 -0.274 1.087 sum -25.236 -5.726 9.333 27.509 Atomic orbital electron populations 1.21767 0.95072 1.01811 1.02199 1.21558 0.96483 0.97149 1.01637 1.21583 0.93247 0.96965 1.03184 1.21339 0.96182 0.94815 1.02016 1.21756 0.87217 1.00414 1.07240 1.21818 0.92266 0.82568 0.74142 1.90724 1.71539 1.32906 1.49580 1.43476 1.03975 1.10701 1.72467 1.17682 0.83964 0.97673 0.98052 1.21004 0.94073 1.00044 0.99769 1.20973 0.93739 0.99277 0.99936 1.20183 0.96568 0.94875 0.96059 1.18646 0.90017 0.96580 0.96377 1.21157 0.92400 1.30384 1.11680 0.95284 1.25981 1.01091 0.95593 0.96335 1.70057 1.17833 1.41834 1.29122 0.85657 0.77882 0.78622 0.80517 1.19338 1.20623 1.16869 1.21054 0.94648 0.98142 0.99279 1.21078 0.93070 1.00383 1.00692 0.92214 0.92367 0.92819 0.92750 0.92566 0.90586 0.90840 0.93149 0.92870 0.85601 0.86012 0.73254 0.86084 0.86854 0.95724 0.94687 0.92363 0.85086 0.82283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 71.98 0.71 -0.72 16 2 C -0.13 -1.55 5.93 30.59 0.18 -1.37 16 3 C -0.11 -1.15 5.21 30.59 0.16 -0.99 16 4 C -0.11 -1.59 4.50 30.59 0.14 -1.46 16 5 C -0.13 -1.52 5.70 29.85 0.17 -1.35 16 6 C 0.50 11.39 7.57 87.66 0.66 12.05 16 7 O -0.57 -18.76 13.67 -3.04 -0.04 -18.80 16 8 N -0.66 -14.03 5.34 -303.51 -1.62 -15.65 16 9 C 0.12 3.70 6.28 38.15 0.24 3.94 16 10 C -0.13 -4.79 8.66 22.39 0.19 -4.59 16 11 C -0.12 -5.05 9.69 22.25 0.22 -4.83 16 12 C -0.08 -3.34 5.07 -19.84 -0.10 -3.44 16 13 C 0.02 1.03 4.17 29.10 0.12 1.15 16 14 C -0.52 -30.63 9.65 25.60 0.25 -30.38 16 15 H 0.03 1.91 7.98 -2.91 -0.02 1.89 16 16 C 0.01 0.41 5.47 84.65 0.46 0.88 16 17 N -0.95 -59.99 13.96 21.45 0.30 -59.69 16 18 Si 0.95 44.65 27.46 68.60 1.88 46.53 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.25 -10.67 6.55 99.48 0.65 -10.02 16 22 C -0.11 -4.17 9.69 22.25 0.22 -3.96 16 23 C -0.13 -3.92 9.96 22.39 0.22 -3.70 16 24 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 26 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 32 H 0.05 0.99 8.10 -2.39 -0.02 0.97 16 33 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.43 5.25 8.82 -92.71 -0.82 4.43 16 36 H 0.12 4.53 6.42 -2.91 -0.02 4.51 16 37 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 38 H 0.02 1.18 7.51 -2.39 -0.02 1.17 16 39 H 0.03 1.65 7.15 -2.39 -0.02 1.63 16 40 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 41 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 42 H 0.16 3.30 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -75.86 348.50 4.48 -71.38 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.12 Total: 15.01 kcal Atomic # 6 Polarization: -42.61 SS G_CDS: 3.84 Total: -38.77 kcal Atomic # 7 Polarization: -74.02 SS G_CDS: -1.32 Total: -75.35 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.04 Total: -18.80 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.53 kcal Total: -75.86 4.48 -71.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928404055.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.191 kcal (2) G-P(sol) polarization free energy of solvation -75.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds