Wall clock time and date at job start Mon Mar 30 2020 02:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47225 * 2 1 4 4 C 1.53009 * 109.46812 * 60.00179 * 3 2 1 5 5 C 1.53003 * 109.47144 * 300.00357 * 3 2 1 6 6 C 1.50695 * 109.47197 * 180.02562 * 3 2 1 7 7 O 1.21288 * 119.99814 * 359.97438 * 6 3 2 8 8 N 1.34778 * 119.99838 * 180.02562 * 6 3 2 9 9 C 1.39927 * 119.99585 * 185.27077 * 8 6 3 10 10 C 1.38874 * 120.07215 * 33.29114 * 9 8 6 11 11 C 1.38112 * 119.93099 * 180.02562 * 10 9 8 12 12 C 1.38283 * 120.07013 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.92860 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46706 * 90.00245 * 13 12 11 15 15 H 1.07999 * 120.00604 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99849 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00008 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00113 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47232 * 59.99702 * 18 16 14 20 20 H 1.48498 * 109.47233 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46963 * 299.99825 * 18 16 14 22 22 C 1.38286 * 120.13828 * 0.25319 * 12 11 10 23 23 C 1.38105 * 120.07308 * 359.48773 * 22 12 11 24 24 H 1.09002 * 109.47335 * 299.99782 * 1 2 3 25 25 H 1.09005 * 109.47386 * 59.99685 * 1 2 3 26 26 H 1.08997 * 109.47582 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46850 * 240.00190 * 2 1 3 28 28 H 1.08993 * 109.47018 * 120.00321 * 2 1 3 29 29 H 1.09001 * 109.46534 * 179.97438 * 4 3 2 30 30 H 1.08998 * 109.46720 * 299.99621 * 4 3 2 31 31 H 1.08995 * 109.46949 * 60.00272 * 4 3 2 32 32 H 1.08998 * 109.47110 * 299.99920 * 5 3 2 33 33 H 1.08997 * 109.47261 * 60.00109 * 5 3 2 34 34 H 1.09005 * 109.46583 * 179.97438 * 5 3 2 35 35 H 0.96994 * 120.00037 * 5.27153 * 8 6 3 36 36 H 1.08001 * 120.03469 * 359.97438 * 10 9 8 37 37 H 1.07997 * 119.96629 * 179.97438 * 11 10 9 38 38 H 1.09001 * 109.47113 * 210.00070 * 13 12 11 39 39 H 1.08995 * 109.47338 * 330.00260 * 13 12 11 40 40 H 0.96996 * 119.99982 * 180.02562 * 17 16 14 41 41 H 1.08002 * 119.95762 * 179.74594 * 22 12 11 42 42 H 1.08004 * 120.04052 * 180.25141 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2494 5 6 1.5300 2.1638 -1.2492 6 6 3.5470 1.4425 -0.0006 7 8 4.1534 0.3921 -0.0006 8 7 4.2209 2.6097 -0.0002 9 6 5.6156 2.6123 -0.1121 10 6 6.2546 1.6407 -0.8714 11 6 7.6315 1.6457 -0.9794 12 6 8.3738 2.6164 -0.3321 13 6 9.8760 2.6185 -0.4517 14 6 10.2843 3.4540 -1.6375 15 1 9.5313 3.9351 -2.2442 16 6 11.6192 3.6035 -1.9487 17 7 12.5362 3.0173 -1.2103 18 14 12.1253 4.6386 -3.4190 19 1 11.6419 6.0305 -3.2344 20 1 13.6056 4.6408 -3.5368 21 1 11.5308 4.0679 -4.6543 22 6 7.7409 3.5818 0.4293 23 6 6.3641 3.5855 0.5370 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.8938 3.1912 1.2495 30 1 0.4400 2.1637 1.2493 31 1 1.8934 1.6499 2.1392 32 1 1.8933 1.6500 -2.1392 33 1 0.4400 2.1638 -1.2492 34 1 1.8930 3.1916 -1.2489 35 1 3.7390 3.4479 0.0777 36 1 5.6755 0.8816 -1.3761 37 1 8.1290 0.8902 -1.5693 38 1 10.3121 3.0372 0.4552 39 1 10.2311 1.5970 -0.5875 40 1 13.4753 3.1228 -1.4290 41 1 8.3238 4.3361 0.9370 42 1 5.8700 4.3421 1.1286 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928406705.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:01 Heat of formation + Delta-G solvation = -37.297048 kcal Electronic energy + Delta-G solvation = -20789.946780 eV Core-core repulsion = 17733.855690 eV Total energy + Delta-G solvation = -3056.091090 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.71129 -38.50805 -36.50854 -34.90204 -33.01027 -30.97645 -30.28681 -29.90693 -27.73489 -26.65853 -25.12313 -23.47370 -22.39265 -21.66062 -20.14876 -19.06988 -17.55739 -16.69237 -16.28731 -15.55197 -15.26653 -14.89247 -14.70869 -14.29927 -14.18687 -13.95987 -13.13640 -13.08901 -12.89729 -12.73792 -12.52865 -12.43224 -12.25812 -11.99416 -11.75662 -11.57711 -11.35962 -11.26637 -10.92894 -10.89285 -10.77487 -10.60098 -10.33628 -9.97499 -9.74026 -9.38013 -9.23432 -8.40514 -8.27397 -7.35497 -6.01932 -4.06121 1.87285 2.07531 2.75497 3.12541 3.32934 3.37022 3.40178 4.32103 4.37816 4.42219 4.53516 4.60122 4.87145 5.01239 5.15027 5.23219 5.25661 5.31790 5.42043 5.45100 5.48792 5.59371 5.62739 5.67636 5.71513 5.84910 5.97996 6.00474 6.07084 6.13176 6.15151 6.21831 6.65942 6.80414 6.93496 7.18197 7.22423 7.52304 7.55196 7.72915 7.88711 7.93673 8.21856 8.34445 8.98980 9.57416 11.07639 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.039512 B = 0.003184 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.472125 B = 8791.213188 C = 8826.653066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.101 4.101 3 C -0.081 4.081 4 C -0.144 4.144 5 C -0.143 4.143 6 C 0.517 3.483 7 O -0.520 6.520 8 N -0.667 5.667 9 C 0.105 3.895 10 C -0.118 4.118 11 C -0.108 4.108 12 C -0.043 4.043 13 C 0.048 3.952 14 C -0.512 4.512 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.896 3.104 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.108 4.108 23 C -0.144 4.144 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.404 0.596 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.028 0.972 39 H 0.029 0.971 40 H 0.262 0.738 41 H 0.122 0.878 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.323 -0.612 3.408 24.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.139 4.139 3 C -0.084 4.084 4 C -0.201 4.201 5 C -0.201 4.201 6 C 0.304 3.696 7 O -0.395 6.395 8 N -0.312 5.312 9 C 0.013 3.987 10 C -0.137 4.137 11 C -0.126 4.126 12 C -0.043 4.043 13 C 0.011 3.989 14 C -0.550 4.550 15 H 0.075 0.925 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.723 3.277 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.127 4.127 23 C -0.165 4.165 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.239 0.761 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.072 0.928 41 H 0.140 0.860 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -23.738 -1.415 3.413 24.024 hybrid contribution 0.183 1.067 -0.763 1.324 sum -23.556 -0.348 2.650 23.707 Atomic orbital electron populations 1.21920 0.95492 1.01876 1.01957 1.21358 0.95371 0.93534 1.03597 1.20824 0.91028 0.98677 0.97870 1.21937 1.02081 0.99920 0.96179 1.21930 1.01982 1.00043 0.96128 1.20673 0.89745 0.83529 0.75654 1.90722 1.69967 1.31179 1.47609 1.43432 1.05665 1.09176 1.72881 1.17541 0.81629 0.99249 1.00307 1.20972 0.94865 0.98990 0.98922 1.20996 0.92564 0.99270 0.99807 1.20705 0.99143 0.92050 0.92414 1.18343 0.84624 0.98155 0.97744 1.21033 0.91733 1.30481 1.11732 0.92525 1.25018 0.96614 0.95921 0.96806 1.69950 1.00753 1.43666 1.38982 0.86597 0.77282 0.80789 0.83007 1.20197 1.21248 1.20171 1.20882 0.92879 0.99057 0.99842 1.20737 0.94319 1.00013 1.01396 0.92401 0.92378 0.92526 0.91135 0.91162 0.92201 0.90931 0.91906 0.91883 0.90964 0.92108 0.76125 0.85971 0.86114 0.95328 0.95308 0.92793 0.86033 0.86878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 9.21 37.16 0.34 -0.68 16 2 C -0.10 -0.93 4.28 -26.73 -0.11 -1.04 16 3 C -0.08 -0.73 0.65 -155.66 -0.10 -0.83 16 4 C -0.14 -1.01 8.02 37.16 0.30 -0.71 16 5 C -0.14 -1.05 8.02 37.16 0.30 -0.75 16 6 C 0.52 6.87 6.22 -10.99 -0.07 6.81 16 7 O -0.52 -9.08 13.67 5.55 0.08 -9.00 16 8 N -0.67 -8.57 5.12 -9.86 -0.05 -8.62 16 9 C 0.11 1.76 6.28 -83.69 -0.53 1.24 16 10 C -0.12 -2.23 8.66 -39.39 -0.34 -2.57 16 11 C -0.11 -2.25 9.69 -39.61 -0.38 -2.63 16 12 C -0.04 -0.95 5.07 -104.59 -0.53 -1.48 16 13 C 0.05 1.26 5.10 -29.04 -0.15 1.11 16 14 C -0.51 -14.45 9.09 -34.44 -0.31 -14.76 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 18 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C -0.11 -2.12 9.69 -39.61 -0.38 -2.50 16 23 C -0.14 -2.40 9.96 -39.39 -0.39 -2.80 16 24 H 0.06 0.33 6.43 -51.93 -0.33 0.00 16 25 H 0.06 0.34 6.43 -51.93 -0.33 0.00 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.74 8.10 -51.93 -0.42 0.31 16 28 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 29 H 0.06 0.36 7.45 -51.93 -0.39 -0.03 16 30 H 0.07 0.39 6.43 -51.93 -0.33 0.06 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.41 6.43 -51.93 -0.33 0.07 16 34 H 0.06 0.40 7.69 -51.93 -0.40 0.00 16 35 H 0.40 3.79 7.68 -40.82 -0.31 3.48 16 36 H 0.12 2.30 6.42 -52.49 -0.34 1.96 16 37 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 38 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 39 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.12 2.28 8.06 -52.49 -0.42 1.85 16 42 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 LS Contribution 340.30 15.07 5.13 5.13 Total: -1.00 -32.28 340.30 -8.12 -40.41 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -6.53 Total: 1.42 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -2.46 Total: -20.04 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.69 Total: -34.54 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.08 Total: -9.00 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.28 -8.12 -40.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928406705.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.109 kcal (2) G-P(sol) polarization free energy of solvation -32.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds