Wall clock time and date at job start Mon Mar 30 2020 01:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50702 * 109.47114 * 2 1 4 4 C 1.37851 * 119.79181 * 9.50410 * 3 2 1 5 5 C 1.38270 * 119.95521 * 179.97438 * 4 3 2 6 6 C 1.38099 * 119.88630 * 359.87056 * 5 4 3 7 7 C 1.38571 * 120.48862 * 0.03297 * 6 5 4 8 8 C 1.38416 * 119.86281 * 0.21384 * 7 6 5 9 9 N 1.39405 * 122.94919 * 179.42882 * 8 7 6 10 10 C 1.46899 * 110.99889 * 145.83562 * 9 8 7 11 11 C 1.53008 * 109.46748 * 207.11321 * 10 9 8 12 12 H 1.08995 * 109.46881 * 60.00243 * 11 10 9 13 13 O 1.42901 * 109.47280 * 299.99918 * 11 10 9 14 14 C 1.50704 * 109.46734 * 179.97438 * 11 10 9 15 15 H 1.08003 * 120.00052 * 0.02562 * 14 11 10 16 16 C 1.37878 * 119.99973 * 180.02562 * 14 11 10 17 17 N 1.31520 * 119.99872 * 0.02562 * 16 14 11 18 18 Si 1.86793 * 120.00304 * 180.02562 * 16 14 11 19 19 H 1.48508 * 109.47193 * 59.99647 * 18 16 14 20 20 H 1.48495 * 109.47341 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47021 * 300.00138 * 18 16 14 22 22 C 1.46427 * 113.13015 * 20.28436 * 9 8 7 23 23 C 1.53373 * 108.67577 * 306.62802 * 22 9 8 24 24 C 1.50802 * 118.13016 * 180.56606 * 7 6 5 25 25 H 1.08995 * 109.47659 * 294.38853 * 1 2 3 26 26 H 1.09005 * 109.46900 * 54.38380 * 1 2 3 27 27 H 1.08999 * 109.47126 * 174.38086 * 1 2 3 28 28 H 1.09001 * 109.47390 * 240.00123 * 2 1 3 29 29 H 1.09000 * 109.47504 * 120.00005 * 2 1 3 30 30 H 1.07999 * 120.02058 * 0.02562 * 4 3 2 31 31 H 1.08001 * 120.05659 * 180.14429 * 5 4 3 32 32 H 1.08000 * 119.75642 * 180.02562 * 6 5 4 33 33 H 1.08999 * 109.47329 * 327.10721 * 10 9 8 34 34 H 1.08995 * 109.47231 * 87.11778 * 10 9 8 35 35 H 0.96698 * 113.99948 * 300.00407 * 13 11 10 36 36 H 0.96992 * 120.00244 * 180.02562 * 17 16 14 37 37 H 1.09002 * 109.60190 * 66.38102 * 22 9 8 38 38 H 1.09000 * 109.60283 * 186.70641 * 22 9 8 39 39 H 1.09001 * 109.77188 * 187.82598 * 23 22 9 40 40 H 1.08999 * 109.76502 * 308.54966 * 23 22 9 41 41 H 1.08998 * 109.44189 * 315.50032 * 24 7 6 42 42 H 1.09003 * 109.43823 * 75.38822 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 1.1481 2.4599 0.1975 5 6 1.6055 3.7648 0.1987 6 6 2.9480 4.0236 0.0045 7 6 3.8430 2.9842 -0.1927 8 6 3.3898 1.6764 -0.1999 9 7 4.2309 0.5836 -0.4038 10 6 3.7851 -0.5771 0.3785 11 6 4.9852 -1.4738 0.6897 12 1 5.7209 -0.9100 1.2631 13 8 5.5751 -1.9213 -0.5325 14 6 4.5279 -2.6641 1.4928 15 1 3.4856 -2.7707 1.7547 16 6 5.4403 -3.6172 1.8933 17 7 6.7097 -3.4872 1.5748 18 14 4.8734 -5.0930 2.8881 19 1 3.8714 -5.8616 2.1066 20 1 6.0381 -5.9632 3.1903 21 1 4.2598 -4.6279 4.1579 22 6 5.6394 0.8847 -0.1399 23 6 6.0402 2.1170 -0.9602 24 6 5.2988 3.3267 -0.3865 25 1 -0.3634 0.4243 0.9359 26 1 -0.3633 0.5985 -0.8355 27 1 -0.3633 -1.0227 -0.1006 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.0991 2.2548 0.3521 31 1 0.9146 4.5799 0.3556 32 1 3.3030 5.0436 0.0063 33 1 3.3353 -0.2357 1.3108 34 1 3.0494 -1.1409 -0.1949 35 1 4.9760 -2.4313 -1.0948 36 1 7.3514 -4.1578 1.8562 37 1 5.7765 1.0915 0.9215 38 1 6.2558 0.0335 -0.4292 39 1 7.1162 2.2751 -0.8864 40 1 5.7597 1.9726 -2.0035 41 1 5.3853 4.1661 -1.0765 42 1 5.7381 3.5998 0.5730 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929976375.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:49 Heat of formation + Delta-G solvation = 2.647658 kcal Electronic energy + Delta-G solvation = -22343.258106 eV Core-core repulsion = 19288.899148 eV Total energy + Delta-G solvation = -3054.358958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.64921 -37.13362 -35.88474 -34.64407 -32.19633 -32.02097 -29.99731 -29.26310 -27.64604 -25.65864 -24.46075 -23.66738 -22.17398 -20.51001 -20.22002 -18.76309 -17.22076 -16.31938 -15.73856 -15.34934 -14.81911 -14.63993 -14.47915 -14.27590 -13.81782 -13.69945 -13.34047 -12.93219 -12.90062 -12.63067 -12.34484 -12.10333 -11.74942 -11.38773 -11.24458 -11.15506 -11.07646 -10.95418 -10.87310 -10.56935 -10.45283 -10.16823 -10.11007 -9.98915 -9.27673 -8.85756 -8.60550 -8.27153 -8.13765 -7.06081 -6.07292 -4.25705 1.66619 1.77433 3.25421 3.31148 3.32622 3.95116 4.31306 4.46135 4.92906 4.98192 5.16523 5.19976 5.27127 5.34741 5.45428 5.46780 5.55517 5.61562 5.76431 5.77952 5.86585 5.96560 6.02655 6.08754 6.16044 6.20082 6.25192 6.27798 6.28450 6.34427 6.43923 6.53389 6.61730 6.70801 6.80031 6.87163 6.91007 7.19066 7.54724 7.64433 7.76601 7.89024 8.10579 8.76647 9.32765 9.51420 10.97008 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019856 B = 0.006011 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.845877 B = 4656.627223 C = 5684.306844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.100 4.100 3 C -0.121 4.121 4 C -0.100 4.100 5 C -0.163 4.163 6 C -0.100 4.100 7 C -0.134 4.134 8 C 0.143 3.857 9 N -0.483 5.483 10 C 0.009 3.991 11 C 0.220 3.780 12 H 0.058 0.942 13 O -0.559 6.559 14 C -0.574 4.574 15 H 0.056 0.944 16 C 0.081 3.919 17 N -0.859 5.859 18 Si 0.890 3.110 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.276 1.276 22 C 0.052 3.948 23 C -0.123 4.123 24 C -0.075 4.075 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.121 0.879 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.347 0.653 36 H 0.262 0.738 37 H 0.038 0.962 38 H 0.118 0.882 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.303 11.569 -3.504 14.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.136 4.136 3 C -0.124 4.124 4 C -0.119 4.119 5 C -0.183 4.183 6 C -0.119 4.119 7 C -0.137 4.137 8 C 0.042 3.958 9 N -0.195 5.195 10 C -0.115 4.115 11 C 0.162 3.838 12 H 0.076 0.924 13 O -0.362 6.362 14 C -0.612 4.612 15 H 0.074 0.926 16 C -0.125 4.125 17 N -0.494 5.494 18 Si 0.717 3.283 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.074 4.074 23 C -0.161 4.161 24 C -0.112 4.112 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.101 0.899 29 H 0.115 0.885 30 H 0.139 0.861 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.192 0.808 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.136 0.864 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.524 11.587 -3.722 13.809 hybrid contribution -0.828 -0.792 1.113 1.597 sum -7.352 10.796 -2.609 13.319 Atomic orbital electron populations 1.21932 0.96546 1.01413 1.01221 1.21506 0.94862 0.93386 1.03884 1.19775 0.92048 0.95964 1.04612 1.20855 0.99116 0.92104 0.99825 1.20814 0.95492 0.96395 1.05576 1.20827 0.93163 0.97835 1.00045 1.19475 0.95835 0.91840 1.06568 1.18793 0.91952 0.90307 0.94755 1.58077 1.03042 1.04430 1.53909 1.24265 1.01874 0.90357 0.95021 1.19640 0.88971 0.91598 0.83587 0.92423 1.86490 1.43054 1.73733 1.32890 1.21521 0.94707 1.08149 1.36806 0.92573 1.25005 0.94730 0.97928 0.94858 1.70051 1.01494 1.34531 1.43319 0.86719 0.78276 0.82621 0.80671 1.20058 1.21177 1.20175 1.22421 0.87909 0.99320 0.97700 1.21748 0.99646 0.94230 1.00447 1.20489 0.91473 0.98374 1.00854 0.92897 0.92961 0.92660 0.89888 0.88507 0.86139 0.86916 0.86873 0.93080 0.88750 0.80844 0.92855 0.94376 0.86419 0.91035 0.91068 0.91314 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.58 37.15 0.32 -1.60 16 2 C -0.10 -1.53 3.99 -27.89 -0.11 -1.64 16 3 C -0.12 -1.97 5.49 -104.26 -0.57 -2.54 16 4 C -0.10 -1.44 8.95 -39.71 -0.36 -1.80 16 5 C -0.16 -2.21 10.05 -39.62 -0.40 -2.61 16 6 C -0.10 -1.40 9.63 -39.51 -0.38 -1.78 16 7 C -0.13 -2.12 5.74 -104.38 -0.60 -2.72 16 8 C 0.14 2.51 5.72 -83.85 -0.48 2.03 16 9 N -0.48 -9.05 4.63 -171.29 -0.79 -9.84 16 10 C 0.01 0.18 3.03 -3.82 -0.01 0.17 16 11 C 0.22 5.27 2.07 -27.88 -0.06 5.21 16 12 H 0.06 1.53 6.44 -51.93 -0.33 1.20 16 13 O -0.56 -13.55 10.89 -35.23 -0.38 -13.93 16 14 C -0.57 -15.08 8.76 -34.44 -0.30 -15.38 16 15 H 0.06 1.43 7.74 -52.48 -0.41 1.03 16 16 C 0.08 2.20 5.40 -17.82 -0.10 2.11 16 17 N -0.86 -24.60 12.84 55.43 0.71 -23.89 16 18 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 22 C 0.05 0.97 4.12 -3.89 -0.02 0.95 16 23 C -0.12 -1.85 6.19 -26.52 -0.16 -2.02 16 24 C -0.07 -1.04 5.81 -27.81 -0.16 -1.20 16 25 H 0.05 0.62 7.43 -51.93 -0.39 0.23 16 26 H 0.05 0.61 7.62 -51.93 -0.40 0.22 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.08 1.34 6.43 -51.93 -0.33 1.00 16 29 H 0.10 1.61 5.08 -51.93 -0.26 1.35 16 30 H 0.12 1.48 5.94 -52.49 -0.31 1.17 16 31 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 33 H 0.05 1.05 5.93 -51.93 -0.31 0.74 16 34 H 0.09 1.81 4.76 -51.93 -0.25 1.56 16 35 H 0.35 7.65 9.04 45.56 0.41 8.06 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.04 0.74 7.61 -51.93 -0.40 0.34 16 38 H 0.12 2.47 5.41 -51.93 -0.28 2.19 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 317.32 15.07 4.78 4.78 Total: -1.00 -28.79 317.32 -9.44 -38.23 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -5.35 Total: 11.84 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -3.39 Total: -22.84 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: -0.08 Total: -33.73 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.38 Total: -13.93 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.79 -9.44 -38.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929976375.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.877 kcal (2) G-P(sol) polarization free energy of solvation -28.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds