Wall clock time and date at job start Mon Mar 30 2020 01:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50702 * 109.47114 * 2 1 4 4 C 1.37851 * 119.79181 * 9.50410 * 3 2 1 5 5 C 1.38270 * 119.95521 * 179.97438 * 4 3 2 6 6 C 1.38099 * 119.88630 * 359.87056 * 5 4 3 7 7 C 1.38571 * 120.48862 * 0.03297 * 6 5 4 8 8 C 1.38416 * 119.86281 * 0.21384 * 7 6 5 9 9 N 1.39405 * 122.94919 * 179.42882 * 8 7 6 10 10 C 1.46899 * 110.99889 * 145.83562 * 9 8 7 11 11 C 1.53008 * 109.46748 * 207.11321 * 10 9 8 12 12 H 1.08995 * 109.46881 * 60.00243 * 11 10 9 13 13 O 1.42901 * 109.47280 * 299.99918 * 11 10 9 14 14 C 1.50704 * 109.46734 * 179.97438 * 11 10 9 15 15 H 1.08003 * 120.00052 * 0.02562 * 14 11 10 16 16 C 1.37878 * 119.99973 * 180.02562 * 14 11 10 17 17 N 1.31520 * 119.99872 * 0.02562 * 16 14 11 18 18 Si 1.86793 * 120.00304 * 180.02562 * 16 14 11 19 19 H 1.48508 * 109.47193 * 59.99647 * 18 16 14 20 20 H 1.48495 * 109.47341 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47021 * 300.00138 * 18 16 14 22 22 C 1.46427 * 113.13015 * 20.28436 * 9 8 7 23 23 C 1.53373 * 108.67577 * 306.62802 * 22 9 8 24 24 C 1.50802 * 118.13016 * 180.56606 * 7 6 5 25 25 H 1.08995 * 109.47659 * 294.38853 * 1 2 3 26 26 H 1.09005 * 109.46900 * 54.38380 * 1 2 3 27 27 H 1.08999 * 109.47126 * 174.38086 * 1 2 3 28 28 H 1.09001 * 109.47390 * 240.00123 * 2 1 3 29 29 H 1.09000 * 109.47504 * 120.00005 * 2 1 3 30 30 H 1.07999 * 120.02058 * 0.02562 * 4 3 2 31 31 H 1.08001 * 120.05659 * 180.14429 * 5 4 3 32 32 H 1.08000 * 119.75642 * 180.02562 * 6 5 4 33 33 H 1.08999 * 109.47329 * 327.10721 * 10 9 8 34 34 H 1.08995 * 109.47231 * 87.11778 * 10 9 8 35 35 H 0.96698 * 113.99948 * 300.00407 * 13 11 10 36 36 H 0.96992 * 120.00244 * 180.02562 * 17 16 14 37 37 H 1.09002 * 109.60190 * 66.38102 * 22 9 8 38 38 H 1.09000 * 109.60283 * 186.70641 * 22 9 8 39 39 H 1.09001 * 109.77188 * 187.82598 * 23 22 9 40 40 H 1.08999 * 109.76502 * 308.54966 * 23 22 9 41 41 H 1.08998 * 109.44189 * 315.50032 * 24 7 6 42 42 H 1.09003 * 109.43823 * 75.38822 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 1.1481 2.4599 0.1975 5 6 1.6055 3.7648 0.1987 6 6 2.9480 4.0236 0.0045 7 6 3.8430 2.9842 -0.1927 8 6 3.3898 1.6764 -0.1999 9 7 4.2309 0.5836 -0.4038 10 6 3.7851 -0.5771 0.3785 11 6 4.9852 -1.4738 0.6897 12 1 5.7209 -0.9100 1.2631 13 8 5.5751 -1.9213 -0.5325 14 6 4.5279 -2.6641 1.4928 15 1 3.4856 -2.7707 1.7547 16 6 5.4403 -3.6172 1.8933 17 7 6.7097 -3.4872 1.5748 18 14 4.8734 -5.0930 2.8881 19 1 3.8714 -5.8616 2.1066 20 1 6.0381 -5.9632 3.1903 21 1 4.2598 -4.6279 4.1579 22 6 5.6394 0.8847 -0.1399 23 6 6.0402 2.1170 -0.9602 24 6 5.2988 3.3267 -0.3865 25 1 -0.3634 0.4243 0.9359 26 1 -0.3633 0.5985 -0.8355 27 1 -0.3633 -1.0227 -0.1006 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.0991 2.2548 0.3521 31 1 0.9146 4.5799 0.3556 32 1 3.3030 5.0436 0.0063 33 1 3.3353 -0.2357 1.3108 34 1 3.0494 -1.1409 -0.1949 35 1 4.9760 -2.4313 -1.0948 36 1 7.3514 -4.1578 1.8562 37 1 5.7765 1.0915 0.9215 38 1 6.2558 0.0335 -0.4292 39 1 7.1162 2.2751 -0.8864 40 1 5.7597 1.9726 -2.0035 41 1 5.3853 4.1661 -1.0765 42 1 5.7381 3.5998 0.5730 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929976375.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:48 Heat of formation + Delta-G solvation = -15.188141 kcal Electronic energy + Delta-G solvation = -22344.031524 eV Core-core repulsion = 19288.899148 eV Total energy + Delta-G solvation = -3055.132376 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.94541 -38.62658 -37.21004 -36.20197 -34.25788 -33.24881 -31.25590 -30.78520 -29.06449 -27.28056 -25.67329 -25.26491 -23.49173 -21.82209 -21.68505 -20.08057 -19.12757 -17.65503 -17.16594 -16.73253 -16.56674 -16.20542 -15.97184 -15.73602 -15.25086 -14.94638 -14.49324 -14.38434 -14.32126 -14.19666 -13.67335 -13.37063 -13.18528 -12.94045 -12.82629 -12.74896 -12.51606 -12.37792 -12.22793 -12.09636 -11.82753 -11.66584 -11.47418 -11.32887 -10.77743 -10.72881 -10.52715 -10.02388 -9.39842 -8.41396 -8.14646 -6.40742 0.52421 0.58720 1.40410 1.41412 1.49516 2.37049 2.74400 3.09114 3.12319 3.77103 3.82746 4.00736 4.02231 4.08566 4.21206 4.29716 4.35733 4.39301 4.47910 4.54225 4.55845 4.63751 4.68874 4.73235 4.84535 4.95780 4.98564 5.04865 5.12718 5.18480 5.20343 5.23832 5.29679 5.31174 5.52741 5.60518 5.66938 5.71004 5.75529 5.98132 6.06862 6.24365 6.55306 6.71134 7.32119 7.52421 8.88980 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019856 B = 0.006011 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.845877 B = 4656.627223 C = 5684.306844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.137 4.137 4 C -0.105 4.105 5 C -0.156 4.156 6 C -0.103 4.103 7 C -0.146 4.146 8 C 0.104 3.896 9 N -0.488 5.488 10 C 0.033 3.967 11 C 0.225 3.775 12 H 0.023 0.977 13 O -0.569 6.569 14 C -0.586 4.586 15 H 0.061 0.939 16 C 0.029 3.971 17 N -0.898 5.898 18 Si 0.958 3.042 19 H -0.265 1.265 20 H -0.285 1.285 21 H -0.270 1.270 22 C 0.056 3.944 23 C -0.115 4.115 24 C -0.072 4.072 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.041 0.959 34 H 0.102 0.898 35 H 0.355 0.645 36 H 0.261 0.739 37 H 0.017 0.983 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.096 0.904 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.361 13.293 -3.499 16.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.134 4.134 3 C -0.140 4.140 4 C -0.123 4.123 5 C -0.175 4.175 6 C -0.121 4.121 7 C -0.149 4.149 8 C 0.004 3.996 9 N -0.200 5.200 10 C -0.092 4.092 11 C 0.167 3.833 12 H 0.040 0.960 13 O -0.373 6.373 14 C -0.625 4.625 15 H 0.079 0.921 16 C -0.174 4.174 17 N -0.535 5.535 18 Si 0.782 3.218 19 H -0.190 1.190 20 H -0.211 1.211 21 H -0.195 1.195 22 C -0.070 4.070 23 C -0.153 4.153 24 C -0.108 4.108 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.161 0.839 31 H 0.164 0.836 32 H 0.161 0.839 33 H 0.059 0.941 34 H 0.120 0.880 35 H 0.200 0.800 36 H 0.070 0.930 37 H 0.036 0.964 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.115 0.885 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.610 13.333 -3.722 16.302 hybrid contribution -0.224 -1.220 1.110 1.664 sum -8.834 12.113 -2.612 15.218 Atomic orbital electron populations 1.21870 0.94045 1.02249 1.02193 1.21333 0.97062 0.92922 1.02123 1.20000 0.92021 0.96849 1.05086 1.21169 0.99939 0.92070 0.99104 1.21274 0.95947 0.96936 1.03298 1.21198 0.93201 0.98696 0.99002 1.19829 0.97244 0.91633 1.06186 1.19058 0.92444 0.90620 0.97430 1.58128 1.03098 1.04790 1.54004 1.23929 0.99655 0.90633 0.94978 1.19433 0.89348 0.91456 0.83066 0.95951 1.86459 1.43720 1.74078 1.33041 1.21930 0.94950 1.08825 1.36748 0.92113 1.25847 0.94708 1.00893 0.95922 1.70195 1.02708 1.35633 1.44920 0.85639 0.77869 0.79019 0.79230 1.19025 1.21074 1.19524 1.22245 0.87902 0.99783 0.97047 1.21704 1.00917 0.93182 0.99473 1.20528 0.90250 0.98299 1.01772 0.91853 0.91888 0.92011 0.91368 0.90569 0.83917 0.83606 0.83890 0.94121 0.88020 0.79988 0.92974 0.96425 0.89715 0.89346 0.91417 0.88518 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.58 71.98 0.62 -2.78 16 2 C -0.10 -2.99 3.99 29.85 0.12 -2.87 16 3 C -0.14 -4.35 5.49 -19.63 -0.11 -4.45 16 4 C -0.10 -2.72 8.95 22.19 0.20 -2.52 16 5 C -0.16 -3.61 10.05 22.24 0.22 -3.39 16 6 C -0.10 -2.53 9.63 22.32 0.21 -2.31 16 7 C -0.15 -4.39 5.74 -19.71 -0.11 -4.51 16 8 C 0.10 3.65 5.72 38.30 0.22 3.87 16 9 N -0.49 -18.98 4.63 -695.83 -3.22 -22.20 16 10 C 0.03 1.37 3.03 86.31 0.26 1.64 16 11 C 0.22 11.37 2.07 29.85 0.06 11.44 16 12 H 0.02 1.29 6.44 -2.39 -0.02 1.28 16 13 O -0.57 -29.09 10.89 -148.98 -1.62 -30.72 16 14 C -0.59 -31.76 8.76 25.60 0.22 -31.53 16 15 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16 16 C 0.03 1.61 5.40 84.65 0.46 2.06 16 17 N -0.90 -53.14 12.84 21.45 0.28 -52.87 16 18 Si 0.96 42.93 29.54 68.60 2.03 44.96 16 19 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 20 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 C 0.06 2.21 4.12 86.52 0.36 2.56 16 23 C -0.12 -3.46 6.19 30.73 0.19 -3.27 16 24 C -0.07 -1.86 5.81 29.89 0.17 -1.69 16 25 H 0.06 1.33 7.43 -2.39 -0.02 1.31 16 26 H 0.06 1.32 7.62 -2.38 -0.02 1.31 16 27 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.07 2.24 6.43 -2.39 -0.02 2.23 16 29 H 0.08 2.61 5.08 -2.39 -0.01 2.60 16 30 H 0.14 3.00 5.94 -2.91 -0.02 2.98 16 31 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 32 H 0.14 2.64 8.06 -2.91 -0.02 2.61 16 33 H 0.04 1.76 5.93 -2.39 -0.01 1.75 16 34 H 0.10 4.07 4.76 -2.39 -0.01 4.06 16 35 H 0.36 16.41 9.04 -74.06 -0.67 15.74 16 36 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 37 H 0.02 0.73 7.61 -2.39 -0.02 0.71 16 38 H 0.08 3.83 5.41 -2.39 -0.01 3.82 16 39 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.10 1.99 8.14 -2.39 -0.02 1.98 16 42 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -63.85 317.32 0.92 -62.93 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: 0.36 Total: 35.66 kcal Atomic # 6 Polarization: -40.86 SS G_CDS: 3.10 Total: -37.76 kcal Atomic # 7 Polarization: -72.12 SS G_CDS: -2.95 Total: -75.07 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -1.62 Total: -30.72 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -63.85 0.92 -62.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929976375.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.740 kcal (2) G-P(sol) polarization free energy of solvation -63.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds