Wall clock time and date at job start Mon Mar 30 2020 02:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50700 * 119.99945 * 2 1 4 4 C 1.52999 * 109.46710 * 125.00034 * 3 2 1 5 5 C 1.53000 * 109.46738 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47450 * 55.00047 * 5 4 3 7 7 N 1.46903 * 109.47240 * 294.99952 * 5 4 3 8 8 C 1.46896 * 111.00106 * 154.99756 * 7 5 4 9 9 C 1.52996 * 109.47256 * 180.02562 * 8 7 5 10 10 H 1.09004 * 109.47066 * 60.00378 * 9 8 7 11 11 O 1.42903 * 109.47446 * 300.00254 * 9 8 7 12 12 C 1.50702 * 109.47159 * 180.02562 * 9 8 7 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 9 8 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 9 8 15 15 N 1.31514 * 119.99985 * 180.27663 * 14 12 9 16 16 Si 1.86800 * 119.99777 * 0.28166 * 14 12 9 17 17 H 1.48498 * 109.47109 * 89.99834 * 16 14 12 18 18 H 1.48507 * 109.46754 * 209.99574 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99405 * 16 14 12 20 20 C 1.50702 * 109.47241 * 175.00179 * 5 4 3 21 21 C 1.38236 * 119.99675 * 79.72449 * 20 5 4 22 22 C 1.38243 * 119.99719 * 179.78803 * 21 20 5 23 23 C 1.38236 * 119.99643 * 0.44772 * 22 21 20 24 24 C 1.38229 * 120.00285 * 359.80589 * 23 22 21 25 25 C 1.38234 * 119.99926 * 259.99998 * 20 5 4 26 26 H 1.08005 * 119.99530 * 179.97438 * 1 2 3 27 27 H 1.07994 * 120.00388 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.99622 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.46704 * 5.00859 * 3 2 1 30 30 H 1.08999 * 109.47174 * 245.00461 * 3 2 1 31 31 H 1.08997 * 109.47197 * 60.00322 * 4 3 2 32 32 H 1.08999 * 109.47651 * 300.00134 * 4 3 2 33 33 H 1.00900 * 110.99721 * 31.05058 * 7 5 4 34 34 H 1.09004 * 109.46774 * 60.00282 * 8 7 5 35 35 H 1.09000 * 109.47723 * 300.00671 * 8 7 5 36 36 H 0.96697 * 113.99557 * 300.00558 * 11 9 8 37 37 H 0.96996 * 119.99730 * 180.02562 * 15 14 12 38 38 H 1.07999 * 120.00222 * 359.97438 * 21 20 5 39 39 H 1.07996 * 120.00291 * 180.27111 * 22 21 20 40 40 H 1.07998 * 119.99912 * 179.83049 * 23 22 21 41 41 H 1.08006 * 120.00227 * 180.02562 * 24 23 22 42 42 H 1.07995 * 120.00364 * 359.97438 * 25 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7996 2.6583 1.1820 6 1 3.0910 3.4866 1.1823 7 7 4.6441 2.7368 -0.0174 8 6 4.9181 4.1342 -0.3779 9 6 5.7977 4.1752 -1.6290 10 1 5.2811 3.6821 -2.4526 11 8 7.0299 3.5004 -1.3674 12 6 6.0792 5.6089 -1.9984 13 1 5.6719 6.4106 -1.4004 14 6 6.8620 5.8969 -3.0964 15 7 7.1122 7.1480 -3.4156 16 14 7.5670 4.5102 -4.1304 17 1 6.6112 4.1649 -5.2132 18 1 8.8558 4.9438 -4.7274 19 1 7.7946 3.3195 -3.2727 20 6 4.6660 2.7381 2.4125 21 6 5.8772 2.0729 2.4492 22 6 6.6741 2.1496 3.5762 23 6 6.2553 2.8840 4.6700 24 6 5.0418 3.5449 4.6352 25 6 4.2469 3.4718 3.5065 26 1 -0.5399 -0.9354 -0.0004 27 1 -0.5400 0.9352 0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3585 2.1316 0.0897 30 1 2.6213 1.4027 -0.9314 31 1 3.7400 0.5065 1.0920 32 1 2.4773 1.2354 2.1130 33 1 4.2238 2.2402 -0.7887 34 1 5.4342 4.6274 0.4459 35 1 3.9783 4.6489 -0.5778 36 1 7.5436 3.8860 -0.6447 37 1 7.6626 7.3506 -4.1881 38 1 6.2024 1.4957 1.5962 39 1 7.6224 1.6335 3.6033 40 1 6.8765 2.9418 5.5515 41 1 4.7148 4.1190 5.4896 42 1 3.2988 3.9882 3.4794 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930229181.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:29 Heat of formation + Delta-G solvation = -12.989093 kcal Electronic energy + Delta-G solvation = -21105.029963 eV Core-core repulsion = 18049.992945 eV Total energy + Delta-G solvation = -3055.037018 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.43224 -37.27704 -36.03987 -34.40462 -32.19738 -31.46921 -30.67174 -30.11718 -28.03526 -25.66722 -23.74899 -22.50297 -22.17894 -20.50119 -20.03055 -19.86365 -17.25571 -16.65384 -15.76248 -15.61004 -15.14933 -14.88999 -14.64137 -14.26293 -14.17353 -13.76241 -13.47839 -13.22520 -13.01136 -12.79131 -12.54235 -12.45892 -11.98127 -11.88251 -11.46112 -11.27775 -11.09850 -10.96037 -10.88028 -10.66664 -10.62453 -10.31676 -9.87721 -9.45196 -9.00574 -8.71173 -8.60070 -8.50963 -8.18813 -7.92333 -6.10587 -4.21673 1.53483 1.62854 2.14969 3.40876 3.50582 3.78367 3.97030 4.47616 4.56349 4.71714 4.86318 4.91811 5.09838 5.14925 5.21797 5.25231 5.30600 5.37722 5.43716 5.57310 5.69071 5.72491 5.77852 5.85007 5.93857 6.02183 6.09021 6.15729 6.19129 6.26021 6.32478 6.49427 6.62965 6.64109 6.68258 6.72744 6.87344 7.21051 7.35303 7.42128 7.67344 7.85366 8.32415 8.86472 9.13672 9.54563 11.00200 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012206 B = 0.005553 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.388403 B = 5041.122270 C = 6618.262678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.101 4.101 4 C -0.109 4.109 5 C 0.122 3.878 6 H 0.048 0.952 7 N -0.675 5.675 8 C 0.046 3.954 9 C 0.200 3.800 10 H 0.049 0.951 11 O -0.571 6.571 12 C -0.565 4.565 13 H 0.070 0.930 14 C 0.083 3.917 15 N -0.895 5.895 16 Si 0.872 3.128 17 H -0.289 1.289 18 H -0.297 1.297 19 H -0.215 1.215 20 C -0.067 4.067 21 C -0.081 4.081 22 C -0.128 4.128 23 C -0.128 4.128 24 C -0.127 4.127 25 C -0.121 4.121 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.338 0.662 34 H 0.066 0.934 35 H 0.026 0.974 36 H 0.355 0.645 37 H 0.264 0.736 38 H 0.132 0.868 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.362 -12.926 13.121 20.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.163 4.163 3 C -0.138 4.138 4 C -0.147 4.147 5 C 0.012 3.988 6 H 0.065 0.935 7 N -0.308 5.308 8 C -0.083 4.083 9 C 0.142 3.858 10 H 0.067 0.933 11 O -0.376 6.376 12 C -0.603 4.603 13 H 0.088 0.912 14 C -0.121 4.121 15 N -0.532 5.532 16 Si 0.698 3.302 17 H -0.216 1.216 18 H -0.223 1.223 19 H -0.137 1.137 20 C -0.068 4.068 21 C -0.099 4.099 22 C -0.146 4.146 23 C -0.146 4.146 24 C -0.146 4.146 25 C -0.139 4.139 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.126 0.874 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.158 0.842 34 H 0.085 0.915 35 H 0.045 0.955 36 H 0.200 0.800 37 H 0.074 0.926 38 H 0.150 0.850 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.909 -13.266 12.853 20.093 hybrid contribution -0.382 0.404 -0.530 0.768 sum -8.291 -12.862 12.322 19.647 Atomic orbital electron populations 1.23831 0.96007 1.01664 1.02360 1.22964 0.95948 0.98546 0.98853 1.20872 0.98263 0.95396 0.99307 1.21678 0.97431 0.97459 0.98110 1.20443 0.91802 0.96696 0.89837 0.93462 1.60511 1.48336 1.15713 1.06200 1.22676 0.98985 0.86509 1.00139 1.19678 0.82483 0.92504 0.91090 0.93311 1.86640 1.34883 1.59814 1.56265 1.21514 1.33916 0.91449 1.13378 0.91182 1.24991 0.94657 0.95690 0.96757 1.69963 1.37659 1.18456 1.27103 0.87019 0.77917 0.85472 0.79758 1.21586 1.22347 1.13718 1.19843 0.95701 0.96855 0.94380 1.21091 0.93280 0.98197 0.97326 1.21190 0.99740 0.99802 0.93831 1.21076 0.96592 0.98373 0.98550 1.21004 0.95167 1.00302 0.98078 1.21007 0.99814 0.99508 0.93582 0.88722 0.88699 0.87382 0.91550 0.90488 0.90721 0.91447 0.84232 0.91545 0.95537 0.79958 0.92636 0.84981 0.86471 0.86742 0.86660 0.86744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.83 14.32 29.01 0.42 -1.41 16 2 C -0.15 -1.41 9.52 -36.03 -0.34 -1.75 16 3 C -0.10 -1.07 5.49 -27.88 -0.15 -1.22 16 4 C -0.11 -1.21 4.76 -26.73 -0.13 -1.34 16 5 C 0.12 1.64 2.24 -68.86 -0.15 1.49 16 6 H 0.05 0.66 7.66 -51.93 -0.40 0.26 16 7 N -0.67 -10.66 5.43 -107.95 -0.59 -11.24 16 8 C 0.05 0.88 5.08 -3.83 -0.02 0.86 16 9 C 0.20 4.62 2.52 -27.88 -0.07 4.55 16 10 H 0.05 1.15 7.58 -51.93 -0.39 0.76 16 11 O -0.57 -12.98 10.00 -35.23 -0.35 -13.33 16 12 C -0.56 -15.71 9.34 -34.44 -0.32 -16.03 16 13 H 0.07 2.11 7.99 -52.49 -0.42 1.70 16 14 C 0.08 2.41 5.47 -17.82 -0.10 2.31 16 15 N -0.89 -27.50 13.96 55.43 0.77 -26.73 16 16 Si 0.87 21.94 26.99 -169.99 -4.59 17.35 16 17 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 18 H -0.30 -7.54 7.11 56.52 0.40 -7.13 16 19 H -0.21 -5.29 5.30 56.52 0.30 -4.99 16 20 C -0.07 -0.93 4.71 -104.62 -0.49 -1.43 16 21 C -0.08 -1.14 9.32 -39.58 -0.37 -1.50 16 22 C -0.13 -1.63 10.05 -39.58 -0.40 -2.03 16 23 C -0.13 -1.53 10.05 -39.59 -0.40 -1.93 16 24 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 25 C -0.12 -1.57 9.67 -39.58 -0.38 -1.95 16 26 H 0.09 0.74 8.06 -52.48 -0.42 0.31 16 27 H 0.09 0.83 7.84 -52.49 -0.41 0.42 16 28 H 0.11 0.97 8.06 -52.49 -0.42 0.55 16 29 H 0.07 0.70 7.79 -51.93 -0.40 0.30 16 30 H 0.08 0.86 6.43 -51.93 -0.33 0.53 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.34 5.12 6.47 -39.29 -0.25 4.87 16 34 H 0.07 1.36 8.00 -51.93 -0.42 0.95 16 35 H 0.03 0.52 8.06 -51.93 -0.42 0.10 16 36 H 0.35 7.47 9.04 45.56 0.41 7.88 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.13 1.93 7.73 -52.49 -0.41 1.52 16 39 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 42 H 0.11 1.32 8.04 -52.49 -0.42 0.90 16 LS Contribution 345.97 15.07 5.21 5.21 Total: -1.00 -30.79 345.97 -8.91 -39.70 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -6.06 Total: 12.34 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -3.31 Total: -23.31 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.19 Total: -37.97 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.35 Total: -13.33 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.59 Total: 17.35 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.79 -8.91 -39.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930229181.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.710 kcal (2) G-P(sol) polarization free energy of solvation -30.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds