Wall clock time and date at job start Mon Mar 30 2020 02:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50700 * 119.99945 * 2 1 4 4 C 1.52999 * 109.46710 * 125.00034 * 3 2 1 5 5 C 1.53000 * 109.46738 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47450 * 55.00047 * 5 4 3 7 7 N 1.46903 * 109.47240 * 294.99952 * 5 4 3 8 8 C 1.46896 * 111.00106 * 154.99756 * 7 5 4 9 9 C 1.52996 * 109.47256 * 180.02562 * 8 7 5 10 10 H 1.09004 * 109.47066 * 60.00378 * 9 8 7 11 11 O 1.42903 * 109.47446 * 300.00254 * 9 8 7 12 12 C 1.50702 * 109.47159 * 180.02562 * 9 8 7 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 9 8 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 9 8 15 15 N 1.31514 * 119.99985 * 180.27663 * 14 12 9 16 16 Si 1.86800 * 119.99777 * 0.28166 * 14 12 9 17 17 H 1.48498 * 109.47109 * 89.99834 * 16 14 12 18 18 H 1.48507 * 109.46754 * 209.99574 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99405 * 16 14 12 20 20 C 1.50702 * 109.47241 * 175.00179 * 5 4 3 21 21 C 1.38236 * 119.99675 * 79.72449 * 20 5 4 22 22 C 1.38243 * 119.99719 * 179.78803 * 21 20 5 23 23 C 1.38236 * 119.99643 * 0.44772 * 22 21 20 24 24 C 1.38229 * 120.00285 * 359.80589 * 23 22 21 25 25 C 1.38234 * 119.99926 * 259.99998 * 20 5 4 26 26 H 1.08005 * 119.99530 * 179.97438 * 1 2 3 27 27 H 1.07994 * 120.00388 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.99622 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.46704 * 5.00859 * 3 2 1 30 30 H 1.08999 * 109.47174 * 245.00461 * 3 2 1 31 31 H 1.08997 * 109.47197 * 60.00322 * 4 3 2 32 32 H 1.08999 * 109.47651 * 300.00134 * 4 3 2 33 33 H 1.00900 * 110.99721 * 31.05058 * 7 5 4 34 34 H 1.09004 * 109.46774 * 60.00282 * 8 7 5 35 35 H 1.09000 * 109.47723 * 300.00671 * 8 7 5 36 36 H 0.96697 * 113.99557 * 300.00558 * 11 9 8 37 37 H 0.96996 * 119.99730 * 180.02562 * 15 14 12 38 38 H 1.07999 * 120.00222 * 359.97438 * 21 20 5 39 39 H 1.07996 * 120.00291 * 180.27111 * 22 21 20 40 40 H 1.07998 * 119.99912 * 179.83049 * 23 22 21 41 41 H 1.08006 * 120.00227 * 180.02562 * 24 23 22 42 42 H 1.07995 * 120.00364 * 359.97438 * 25 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7996 2.6583 1.1820 6 1 3.0910 3.4866 1.1823 7 7 4.6441 2.7368 -0.0174 8 6 4.9181 4.1342 -0.3779 9 6 5.7977 4.1752 -1.6290 10 1 5.2811 3.6821 -2.4526 11 8 7.0299 3.5004 -1.3674 12 6 6.0792 5.6089 -1.9984 13 1 5.6719 6.4106 -1.4004 14 6 6.8620 5.8969 -3.0964 15 7 7.1122 7.1480 -3.4156 16 14 7.5670 4.5102 -4.1304 17 1 6.6112 4.1649 -5.2132 18 1 8.8558 4.9438 -4.7274 19 1 7.7946 3.3195 -3.2727 20 6 4.6660 2.7381 2.4125 21 6 5.8772 2.0729 2.4492 22 6 6.6741 2.1496 3.5762 23 6 6.2553 2.8840 4.6700 24 6 5.0418 3.5449 4.6352 25 6 4.2469 3.4718 3.5065 26 1 -0.5399 -0.9354 -0.0004 27 1 -0.5400 0.9352 0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3585 2.1316 0.0897 30 1 2.6213 1.4027 -0.9314 31 1 3.7400 0.5065 1.0920 32 1 2.4773 1.2354 2.1130 33 1 4.2238 2.2402 -0.7887 34 1 5.4342 4.6274 0.4459 35 1 3.9783 4.6489 -0.5778 36 1 7.5436 3.8860 -0.6447 37 1 7.6626 7.3506 -4.1881 38 1 6.2024 1.4957 1.5962 39 1 7.6224 1.6335 3.6033 40 1 6.8765 2.9418 5.5515 41 1 4.7148 4.1190 5.4896 42 1 3.2988 3.9882 3.4794 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930229181.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:28 Heat of formation + Delta-G solvation = -32.406130 kcal Electronic energy + Delta-G solvation = -21105.871949 eV Core-core repulsion = 18049.992945 eV Total energy + Delta-G solvation = -3055.879004 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.46643 -38.59074 -37.46652 -35.46630 -34.39342 -32.74623 -31.64919 -31.02823 -29.78118 -26.92826 -25.34166 -23.47862 -23.13072 -22.28455 -21.07571 -20.64526 -19.31712 -17.63702 -17.08286 -16.81769 -16.57457 -16.37407 -15.88271 -15.77642 -15.27870 -15.10592 -14.76433 -14.59494 -14.24386 -14.01489 -13.72029 -13.56531 -13.44896 -13.09066 -12.90999 -12.85164 -12.56326 -12.28524 -12.02525 -11.86507 -11.74971 -11.61922 -11.53130 -11.07266 -10.79828 -10.21479 -10.08542 -9.69435 -9.47116 -9.27749 -8.34852 -6.49730 0.55403 0.64276 1.40890 1.42709 1.46639 1.77568 2.45200 2.97535 3.03887 3.25469 3.80230 3.91480 4.05282 4.11466 4.16911 4.27189 4.32874 4.38975 4.40966 4.48748 4.52474 4.55494 4.67579 4.78707 4.83938 4.88887 4.98343 5.05432 5.15087 5.22437 5.30050 5.32351 5.46531 5.52036 5.67253 5.74546 5.77226 5.80915 5.91216 6.09545 6.20431 6.24827 6.53768 6.65197 7.22239 7.37185 8.79621 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012206 B = 0.005553 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.388403 B = 5041.122270 C = 6618.262678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.157 4.157 3 C -0.098 4.098 4 C -0.097 4.097 5 C 0.126 3.874 6 H 0.042 0.958 7 N -0.670 5.670 8 C 0.065 3.935 9 C 0.208 3.792 10 H 0.051 0.949 11 O -0.570 6.570 12 C -0.567 4.567 13 H 0.032 0.968 14 C 0.028 3.972 15 N -0.942 5.942 16 Si 0.941 3.059 17 H -0.284 1.284 18 H -0.299 1.299 19 H -0.203 1.203 20 C -0.082 4.082 21 C -0.097 4.097 22 C -0.135 4.135 23 C -0.132 4.132 24 C -0.131 4.131 25 C -0.134 4.134 26 H 0.109 0.891 27 H 0.096 0.904 28 H 0.116 0.884 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.343 0.657 34 H 0.052 0.948 35 H 0.020 0.980 36 H 0.363 0.637 37 H 0.266 0.734 38 H 0.122 0.878 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.665 -14.918 14.030 22.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.175 4.175 3 C -0.136 4.136 4 C -0.135 4.135 5 C 0.016 3.984 6 H 0.060 0.940 7 N -0.303 5.303 8 C -0.064 4.064 9 C 0.150 3.850 10 H 0.069 0.931 11 O -0.376 6.376 12 C -0.605 4.605 13 H 0.050 0.950 14 C -0.171 4.171 15 N -0.581 5.581 16 Si 0.766 3.234 17 H -0.211 1.211 18 H -0.226 1.226 19 H -0.125 1.125 20 C -0.083 4.083 21 C -0.116 4.116 22 C -0.153 4.153 23 C -0.150 4.150 24 C -0.149 4.149 25 C -0.152 4.152 26 H 0.127 0.873 27 H 0.114 0.886 28 H 0.134 0.866 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.164 0.836 34 H 0.071 0.929 35 H 0.039 0.961 36 H 0.210 0.790 37 H 0.075 0.925 38 H 0.140 0.860 39 H 0.151 0.849 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.226 -15.273 13.782 22.156 hybrid contribution -0.329 1.079 -0.707 1.331 sum -8.555 -14.194 13.075 21.110 Atomic orbital electron populations 1.24008 0.95903 1.02446 1.01084 1.22980 0.96244 0.98297 0.99977 1.20824 0.98082 0.96062 0.98598 1.21570 0.97229 0.95880 0.98791 1.20467 0.91480 0.97856 0.88599 0.93960 1.60404 1.49582 1.13184 1.07168 1.22247 0.97763 0.88575 0.97854 1.19486 0.83248 0.89480 0.92795 0.93111 1.86577 1.34818 1.59383 1.56825 1.21856 1.32973 0.93163 1.12554 0.94978 1.25875 0.95223 0.97864 0.98172 1.70092 1.39181 1.20679 1.28154 0.85951 0.76858 0.82566 0.78074 1.21094 1.22622 1.12468 1.19941 0.95979 0.97575 0.94810 1.21105 0.93849 0.98889 0.97726 1.21442 1.00241 0.99957 0.93682 1.21416 0.96823 0.97599 0.99113 1.21344 0.95032 1.00071 0.98449 1.21232 1.00597 0.99587 0.93807 0.87317 0.88614 0.86633 0.91730 0.91228 0.90794 0.90656 0.83608 0.92918 0.96144 0.79010 0.92485 0.85978 0.84935 0.84304 0.84387 0.85763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.19 14.32 67.77 0.97 -2.22 16 2 C -0.16 -2.78 9.52 25.64 0.24 -2.53 16 3 C -0.10 -1.95 5.49 29.85 0.16 -1.79 16 4 C -0.10 -2.03 4.76 30.59 0.15 -1.89 16 5 C 0.13 3.28 2.24 44.17 0.10 3.38 16 6 H 0.04 1.16 7.66 -2.39 -0.02 1.14 16 7 N -0.67 -20.64 5.43 -495.45 -2.69 -23.32 16 8 C 0.07 2.51 5.08 86.30 0.44 2.95 16 9 C 0.21 9.47 2.52 29.85 0.08 9.55 16 10 H 0.05 2.33 7.58 -2.38 -0.02 2.31 16 11 O -0.57 -25.04 10.00 -148.98 -1.49 -26.53 16 12 C -0.57 -32.04 9.34 25.60 0.24 -31.80 16 13 H 0.03 2.01 7.99 -2.91 -0.02 1.98 16 14 C 0.03 1.64 5.47 84.66 0.46 2.10 16 15 N -0.94 -59.03 13.96 21.45 0.30 -58.74 16 16 Si 0.94 45.35 26.99 68.60 1.85 47.20 16 17 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 18 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 19 H -0.20 -9.31 5.30 99.48 0.53 -8.78 16 20 C -0.08 -2.22 4.71 -19.87 -0.09 -2.31 16 21 C -0.10 -2.66 9.32 22.27 0.21 -2.45 16 22 C -0.14 -3.25 10.05 22.27 0.22 -3.02 16 23 C -0.13 -2.87 10.05 22.27 0.22 -2.64 16 24 C -0.13 -2.91 10.05 22.27 0.22 -2.68 16 25 C -0.13 -3.31 9.67 22.27 0.22 -3.10 16 26 H 0.11 1.44 8.06 -2.91 -0.02 1.41 16 27 H 0.10 1.51 7.84 -2.91 -0.02 1.49 16 28 H 0.12 1.85 8.06 -2.91 -0.02 1.83 16 29 H 0.06 1.29 7.79 -2.39 -0.02 1.27 16 30 H 0.07 1.48 6.43 -2.39 -0.02 1.46 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.34 10.01 6.47 -89.69 -0.58 9.43 16 34 H 0.05 2.17 8.00 -2.38 -0.02 2.15 16 35 H 0.02 0.81 8.06 -2.39 -0.02 0.79 16 36 H 0.36 14.86 9.04 -74.06 -0.67 14.19 16 37 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 38 H 0.12 3.50 7.73 -2.91 -0.02 3.48 16 39 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 40 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 41 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 42 H 0.12 2.73 8.04 -2.91 -0.02 2.70 16 Total: -1.00 -65.68 345.97 1.38 -64.30 By element: Atomic # 1 Polarization: 35.99 SS G_CDS: -0.44 Total: 35.55 kcal Atomic # 6 Polarization: -42.30 SS G_CDS: 3.84 Total: -38.46 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: -2.39 Total: -82.06 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -1.49 Total: -26.53 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.85 Total: 47.20 kcal Total: -65.68 1.38 -64.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930229181.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.895 kcal (2) G-P(sol) polarization free energy of solvation -65.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds