Wall clock time and date at job start Mon Mar 30 2020 02:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46942 * 2 1 4 4 C 1.50695 * 109.47097 * 179.97438 * 3 2 1 5 5 C 1.37974 * 120.07823 * 265.71654 * 4 3 2 6 6 C 1.38337 * 120.14769 * 180.02562 * 5 4 3 7 7 C 1.38384 * 120.29108 * 359.97438 * 6 5 4 8 8 C 1.37938 * 120.14648 * 0.02562 * 7 6 5 9 9 C 1.39563 * 120.07017 * 85.43960 * 4 3 2 10 10 C 1.47843 * 120.14622 * 359.97438 * 9 4 3 11 11 O 1.21556 * 119.99879 * 55.18379 * 10 9 4 12 12 N 1.34774 * 120.00392 * 235.18549 * 10 9 4 13 13 C 1.46498 * 119.99888 * 5.49756 * 12 10 9 14 14 C 1.52997 * 109.47096 * 85.70888 * 13 12 10 15 15 C 1.46498 * 120.00413 * 185.49433 * 12 10 9 16 16 C 1.50699 * 109.47059 * 89.99691 * 15 12 10 17 17 H 1.07998 * 119.99982 * 0.02562 * 16 15 12 18 18 C 1.37878 * 120.00376 * 180.02562 * 16 15 12 19 19 N 1.31518 * 119.99571 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00362 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47015 * 59.99832 * 20 18 16 22 22 H 1.48500 * 109.46982 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46911 * 299.99925 * 20 18 16 24 24 H 1.09010 * 109.47295 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47391 * 299.99969 * 1 2 3 26 26 H 1.08996 * 109.47501 * 60.00178 * 1 2 3 27 27 H 1.08998 * 109.46689 * 239.99878 * 2 1 3 28 28 H 1.09002 * 109.46818 * 119.99807 * 2 1 3 29 29 H 1.09003 * 109.47340 * 59.99932 * 3 2 1 30 30 H 1.09005 * 109.47033 * 300.00056 * 3 2 1 31 31 H 1.08001 * 119.92747 * 0.02562 * 5 4 3 32 32 H 1.07998 * 119.85396 * 179.97438 * 6 5 4 33 33 H 1.08002 * 119.92524 * 180.02562 * 7 6 5 34 34 H 1.07997 * 120.07358 * 179.97438 * 8 7 6 35 35 H 1.08995 * 109.47297 * 205.71601 * 13 12 10 36 36 H 1.09006 * 109.46869 * 325.71019 * 13 12 10 37 37 H 1.09008 * 109.46786 * 179.97438 * 14 13 12 38 38 H 1.08990 * 109.47482 * 300.00051 * 14 13 12 39 39 H 1.08999 * 109.47034 * 60.00714 * 14 13 12 40 40 H 1.08994 * 109.47649 * 210.00139 * 15 12 10 41 41 H 1.09005 * 109.47149 * 330.00295 * 15 12 10 42 42 H 0.96998 * 119.99980 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 6 4.2379 1.5319 1.1915 6 6 5.6213 1.5326 1.1937 7 6 6.3212 1.4433 0.0033 8 6 5.6427 1.3534 -1.1942 9 6 4.2467 1.3463 -1.2030 10 6 3.5129 1.2435 -2.4824 11 8 2.6891 2.0864 -2.7799 12 7 3.7572 0.2153 -3.3187 13 6 4.6594 -0.8637 -2.9089 14 6 3.8757 -1.9091 -2.1129 15 6 3.1205 0.1766 -4.6375 16 6 4.0021 0.8735 -5.6416 17 1 4.9427 1.3021 -5.3287 18 6 3.6079 0.9641 -6.9597 19 7 2.4622 0.4427 -7.3406 20 14 4.7010 1.8274 -8.2044 21 1 6.0156 1.1399 -8.2696 22 1 4.0556 1.7882 -9.5412 23 1 4.9010 3.2399 -7.7919 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.6976 1.6015 2.1241 32 1 6.1574 1.6032 2.1286 33 1 7.4012 1.4439 0.0120 34 1 6.1901 1.2841 -2.1226 35 1 5.0930 -1.3304 -3.7934 36 1 5.4556 -0.4549 -2.2866 37 1 4.5469 -2.7122 -1.8084 38 1 3.4422 -1.4425 -1.2285 39 1 3.0796 -2.3179 -2.7352 40 1 2.9744 -0.8603 -4.9402 41 1 2.1552 0.6806 -4.5900 42 1 2.1849 0.5060 -8.2680 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930463906.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:13 Heat of formation + Delta-G solvation = -26.854850 kcal Electronic energy + Delta-G solvation = -22029.736550 eV Core-core repulsion = 18974.098267 eV Total energy + Delta-G solvation = -3055.638282 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.10744 -37.90227 -35.42520 -34.82193 -32.83543 -31.00551 -30.96948 -30.05807 -27.21253 -26.23518 -23.91773 -23.08628 -22.25879 -21.79996 -20.70726 -18.67427 -16.76973 -16.40848 -15.96296 -15.65273 -15.50521 -14.51659 -14.33427 -14.22538 -13.76150 -13.61557 -13.34142 -13.24683 -12.95809 -12.40711 -12.31892 -12.08355 -11.94203 -11.76995 -11.61488 -11.34339 -11.20492 -11.00389 -10.88680 -10.73960 -10.64534 -10.50285 -10.35555 -10.12387 -9.64214 -8.97647 -8.68799 -8.54208 -8.42211 -7.63366 -6.04190 -4.09319 1.25353 1.46112 3.31711 3.35362 3.36414 3.41450 3.84578 4.02741 4.44898 4.83080 4.90455 5.00929 5.09521 5.18124 5.25403 5.29974 5.40143 5.45852 5.49808 5.61310 5.70872 5.76825 5.80831 5.92739 5.97592 6.01955 6.06562 6.12704 6.25382 6.29137 6.32128 6.45457 6.50068 6.53341 6.58523 6.76237 7.01284 7.11093 7.45828 7.55652 7.92323 8.23245 8.42053 8.88656 9.07581 9.55802 11.03704 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018419 B = 0.005782 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.839159 B = 4841.574773 C = 5486.653790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.099 4.099 4 C -0.040 4.040 5 C -0.126 4.126 6 C -0.110 4.110 7 C -0.131 4.131 8 C -0.089 4.089 9 C -0.108 4.108 10 C 0.553 3.447 11 O -0.535 6.535 12 N -0.588 5.588 13 C 0.099 3.901 14 C -0.171 4.171 15 C 0.246 3.754 16 C -0.528 4.528 17 H 0.056 0.944 18 C 0.062 3.938 19 N -0.894 5.894 20 Si 0.898 3.102 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.276 1.276 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.129 0.871 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.033 0.967 41 H 0.045 0.955 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.169 -3.089 17.217 17.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.136 4.136 4 C -0.040 4.040 5 C -0.144 4.144 6 C -0.128 4.128 7 C -0.149 4.149 8 C -0.107 4.107 9 C -0.111 4.111 10 C 0.339 3.661 11 O -0.413 6.413 12 N -0.319 5.319 13 C -0.025 4.025 14 C -0.229 4.229 15 C 0.127 3.873 16 C -0.567 4.567 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.202 1.202 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.116 0.884 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.147 0.853 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.051 0.949 41 H 0.063 0.937 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.591 -2.697 16.842 17.431 hybrid contribution 0.773 0.417 -0.784 1.177 sum 4.364 -2.280 16.059 16.797 Atomic orbital electron populations 1.21750 0.95619 1.01468 1.01903 1.21552 0.95973 0.96030 1.02096 1.20876 0.90420 0.97923 1.04358 1.19891 0.96012 0.96498 0.91647 1.20940 0.94194 1.02057 0.97192 1.21178 0.94179 0.99509 0.97945 1.21025 0.99796 1.01820 0.92288 1.21284 0.92982 0.97861 0.98600 1.20120 0.93974 1.02831 0.94165 1.18138 0.82627 0.82281 0.83053 1.90723 1.34419 1.40474 1.75670 1.48196 1.45629 1.20456 1.17633 1.21602 0.92661 0.88649 0.99610 1.22287 1.01094 0.99025 1.00541 1.19296 0.94289 0.97583 0.76114 1.21401 1.05508 1.36723 0.93096 0.92547 1.24925 0.95251 0.95508 0.98311 1.69925 1.20720 1.45100 1.17522 0.86568 0.80435 0.80288 0.80199 1.20243 1.21146 1.20180 0.92852 0.93034 0.92257 0.91349 0.92404 0.91286 0.88402 0.85991 0.86181 0.85898 0.85309 0.89966 0.91065 0.92272 0.92587 0.92231 0.94949 0.93709 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 37.16 0.37 -1.48 16 2 C -0.12 -1.61 5.85 -26.73 -0.16 -1.76 16 3 C -0.10 -1.46 4.87 -27.89 -0.14 -1.59 16 4 C -0.04 -0.60 5.17 -104.23 -0.54 -1.14 16 5 C -0.13 -1.55 9.67 -39.64 -0.38 -1.93 16 6 C -0.11 -1.23 10.04 -39.49 -0.40 -1.63 16 7 C -0.13 -1.58 10.03 -39.64 -0.40 -1.98 16 8 C -0.09 -1.33 7.60 -39.18 -0.30 -1.63 16 9 C -0.11 -1.87 4.95 -104.97 -0.52 -2.38 16 10 C 0.55 11.95 6.38 -12.33 -0.08 11.87 16 11 O -0.53 -13.70 14.73 5.32 0.08 -13.63 16 12 N -0.59 -12.66 2.46 -176.18 -0.43 -13.09 16 13 C 0.10 1.67 5.91 -4.04 -0.02 1.65 16 14 C -0.17 -2.48 10.20 37.16 0.38 -2.10 16 15 C 0.25 6.46 5.18 -5.20 -0.03 6.43 16 16 C -0.53 -14.99 9.39 -34.44 -0.32 -15.31 16 17 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 18 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 20 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.07 1.06 5.93 -51.93 -0.31 0.75 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.86 8.06 -51.93 -0.42 0.44 16 30 H 0.10 1.78 5.92 -51.93 -0.31 1.47 16 31 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 33 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.13 1.92 7.42 -52.49 -0.39 1.53 16 35 H 0.08 1.42 8.04 -51.93 -0.42 1.00 16 36 H 0.07 1.07 4.55 -51.93 -0.24 0.84 16 37 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 38 H 0.06 0.81 5.99 -51.93 -0.31 0.50 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 41 H 0.04 1.32 7.35 -51.93 -0.38 0.94 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 342.40 15.07 5.16 5.16 Total: -1.00 -32.17 342.40 -8.65 -40.82 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.54 Total: 1.01 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -2.63 Total: -11.30 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.30 Total: -38.93 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.08 Total: -13.63 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.17 -8.65 -40.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930463906.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.964 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds