Wall clock time and date at job start Mon Mar 30 2020 02:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46942 * 2 1 4 4 C 1.50695 * 109.47097 * 179.97438 * 3 2 1 5 5 C 1.37974 * 120.07823 * 265.71654 * 4 3 2 6 6 C 1.38337 * 120.14769 * 180.02562 * 5 4 3 7 7 C 1.38384 * 120.29108 * 359.97438 * 6 5 4 8 8 C 1.37938 * 120.14648 * 0.02562 * 7 6 5 9 9 C 1.39563 * 120.07017 * 85.43960 * 4 3 2 10 10 C 1.47843 * 120.14622 * 359.97438 * 9 4 3 11 11 O 1.21556 * 119.99879 * 55.18379 * 10 9 4 12 12 N 1.34774 * 120.00392 * 235.18549 * 10 9 4 13 13 C 1.46498 * 119.99888 * 5.49756 * 12 10 9 14 14 C 1.52997 * 109.47096 * 85.70888 * 13 12 10 15 15 C 1.46498 * 120.00413 * 185.49433 * 12 10 9 16 16 C 1.50699 * 109.47059 * 89.99691 * 15 12 10 17 17 H 1.07998 * 119.99982 * 0.02562 * 16 15 12 18 18 C 1.37878 * 120.00376 * 180.02562 * 16 15 12 19 19 N 1.31518 * 119.99571 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00362 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47015 * 59.99832 * 20 18 16 22 22 H 1.48500 * 109.46982 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46911 * 299.99925 * 20 18 16 24 24 H 1.09010 * 109.47295 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47391 * 299.99969 * 1 2 3 26 26 H 1.08996 * 109.47501 * 60.00178 * 1 2 3 27 27 H 1.08998 * 109.46689 * 239.99878 * 2 1 3 28 28 H 1.09002 * 109.46818 * 119.99807 * 2 1 3 29 29 H 1.09003 * 109.47340 * 59.99932 * 3 2 1 30 30 H 1.09005 * 109.47033 * 300.00056 * 3 2 1 31 31 H 1.08001 * 119.92747 * 0.02562 * 5 4 3 32 32 H 1.07998 * 119.85396 * 179.97438 * 6 5 4 33 33 H 1.08002 * 119.92524 * 180.02562 * 7 6 5 34 34 H 1.07997 * 120.07358 * 179.97438 * 8 7 6 35 35 H 1.08995 * 109.47297 * 205.71601 * 13 12 10 36 36 H 1.09006 * 109.46869 * 325.71019 * 13 12 10 37 37 H 1.09008 * 109.46786 * 179.97438 * 14 13 12 38 38 H 1.08990 * 109.47482 * 300.00051 * 14 13 12 39 39 H 1.08999 * 109.47034 * 60.00714 * 14 13 12 40 40 H 1.08994 * 109.47649 * 210.00139 * 15 12 10 41 41 H 1.09005 * 109.47149 * 330.00295 * 15 12 10 42 42 H 0.96998 * 119.99980 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 6 4.2379 1.5319 1.1915 6 6 5.6213 1.5326 1.1937 7 6 6.3212 1.4433 0.0033 8 6 5.6427 1.3534 -1.1942 9 6 4.2467 1.3463 -1.2030 10 6 3.5129 1.2435 -2.4824 11 8 2.6891 2.0864 -2.7799 12 7 3.7572 0.2153 -3.3187 13 6 4.6594 -0.8637 -2.9089 14 6 3.8757 -1.9091 -2.1129 15 6 3.1205 0.1766 -4.6375 16 6 4.0021 0.8735 -5.6416 17 1 4.9427 1.3021 -5.3287 18 6 3.6079 0.9641 -6.9597 19 7 2.4622 0.4427 -7.3406 20 14 4.7010 1.8274 -8.2044 21 1 6.0156 1.1399 -8.2696 22 1 4.0556 1.7882 -9.5412 23 1 4.9010 3.2399 -7.7919 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.6976 1.6015 2.1241 32 1 6.1574 1.6032 2.1286 33 1 7.4012 1.4439 0.0120 34 1 6.1901 1.2841 -2.1226 35 1 5.0930 -1.3304 -3.7934 36 1 5.4556 -0.4549 -2.2866 37 1 4.5469 -2.7122 -1.8084 38 1 3.4422 -1.4425 -1.2285 39 1 3.0796 -2.3179 -2.7352 40 1 2.9744 -0.8603 -4.9402 41 1 2.1552 0.6806 -4.5900 42 1 2.1849 0.5060 -8.2680 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930463906.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:12 Heat of formation + Delta-G solvation = -44.962268 kcal Electronic energy + Delta-G solvation = -22030.521746 eV Core-core repulsion = 18974.098267 eV Total energy + Delta-G solvation = -3056.423479 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.48386 -39.29429 -37.07558 -35.97710 -34.95211 -32.27679 -32.01436 -31.57707 -29.07812 -27.42252 -25.52676 -24.70984 -23.44123 -23.05451 -21.89371 -20.12992 -18.66421 -18.13785 -17.45989 -16.95072 -16.85787 -16.31214 -15.63322 -15.51818 -15.09954 -14.70233 -14.60684 -14.52325 -14.43963 -14.18216 -13.69821 -13.42249 -13.27450 -13.11563 -13.06102 -12.85596 -12.69998 -12.58091 -12.39265 -12.20669 -12.02337 -11.92586 -11.76609 -11.71720 -11.48493 -10.67102 -10.61627 -9.82966 -9.60418 -9.42507 -8.24853 -6.40723 0.14262 0.44480 1.34368 1.38995 1.46437 1.84475 2.26450 2.42109 2.83312 3.04205 3.62255 3.78788 3.90121 4.08435 4.11750 4.20105 4.25739 4.36536 4.45334 4.48644 4.56501 4.59870 4.75622 4.81714 4.83385 4.91910 4.95444 4.97040 5.01262 5.06440 5.15207 5.23132 5.26095 5.33818 5.40695 5.48032 5.54420 5.55896 5.67671 5.83118 6.02741 6.05289 6.65554 6.73654 7.23520 7.41301 8.82170 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018419 B = 0.005782 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.839159 B = 4841.574773 C = 5486.653790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.097 4.097 4 C -0.052 4.052 5 C -0.119 4.119 6 C -0.093 4.093 7 C -0.122 4.122 8 C -0.102 4.102 9 C -0.136 4.136 10 C 0.549 3.451 11 O -0.592 6.592 12 N -0.593 5.593 13 C 0.094 3.906 14 C -0.162 4.162 15 C 0.264 3.736 16 C -0.547 4.547 17 H 0.053 0.947 18 C 0.009 3.991 19 N -0.927 5.927 20 Si 0.969 3.031 21 H -0.258 1.258 22 H -0.276 1.276 23 H -0.278 1.278 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.030 0.970 27 H 0.039 0.961 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.051 0.949 31 H 0.155 0.845 32 H 0.164 0.836 33 H 0.156 0.844 34 H 0.120 0.880 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.041 0.959 40 H 0.021 0.979 41 H -0.004 1.004 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.946 -3.385 20.271 21.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.135 4.135 4 C -0.053 4.053 5 C -0.137 4.137 6 C -0.111 4.111 7 C -0.139 4.139 8 C -0.121 4.121 9 C -0.139 4.139 10 C 0.338 3.662 11 O -0.474 6.474 12 N -0.323 5.323 13 C -0.028 4.028 14 C -0.220 4.220 15 C 0.142 3.858 16 C -0.585 4.585 17 H 0.072 0.928 18 C -0.190 4.190 19 N -0.567 5.567 20 Si 0.793 3.207 21 H -0.183 1.183 22 H -0.201 1.201 23 H -0.204 1.204 24 H 0.083 0.917 25 H 0.093 0.907 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.104 0.896 29 H 0.114 0.886 30 H 0.069 0.931 31 H 0.172 0.828 32 H 0.181 0.819 33 H 0.174 0.826 34 H 0.138 0.862 35 H 0.093 0.907 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.039 0.961 41 H 0.014 0.986 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.400 -3.031 19.922 21.143 hybrid contribution -0.095 0.511 -1.633 1.714 sum 6.305 -2.520 18.289 19.509 Atomic orbital electron populations 1.21744 0.95038 1.02166 1.01616 1.21518 0.96515 0.95265 1.01881 1.20826 0.90962 0.98404 1.03274 1.20018 0.95964 0.97242 0.92089 1.21296 0.95045 1.00445 0.96907 1.21696 0.93766 0.96364 0.99239 1.21389 1.01435 0.99918 0.91189 1.21311 0.91842 0.99000 0.99916 1.19806 0.94845 1.06967 0.92286 1.18934 0.81897 0.80970 0.84386 1.90673 1.37079 1.42441 1.77253 1.48181 1.45986 1.22050 1.16096 1.21873 0.92844 0.88014 1.00046 1.22205 1.00945 0.99061 0.99743 1.18721 0.92477 0.95859 0.78700 1.21666 1.05631 1.37196 0.94039 0.92850 1.25881 0.96707 0.96031 1.00421 1.70054 1.22375 1.46051 1.18191 0.85451 0.79101 0.78705 0.77467 1.18274 1.20140 1.20356 0.91666 0.90748 0.95076 0.94262 0.89632 0.88625 0.93058 0.82768 0.81889 0.82592 0.86197 0.90657 0.88606 0.88661 0.92407 0.94023 0.96058 0.98555 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.91 71.98 0.71 -2.97 16 2 C -0.11 -3.08 5.85 30.59 0.18 -2.90 16 3 C -0.10 -2.90 4.87 29.85 0.15 -2.76 16 4 C -0.05 -1.52 5.17 -19.61 -0.10 -1.62 16 5 C -0.12 -2.42 9.67 22.23 0.21 -2.20 16 6 C -0.09 -1.56 10.04 22.33 0.22 -1.33 16 7 C -0.12 -2.41 10.03 22.23 0.22 -2.18 16 8 C -0.10 -2.92 7.60 22.53 0.17 -2.75 16 9 C -0.14 -4.76 4.95 -20.09 -0.10 -4.86 16 10 C 0.55 25.39 6.38 86.79 0.55 25.94 16 11 O -0.59 -33.28 14.73 -3.89 -0.06 -33.33 16 12 N -0.59 -27.28 2.46 -829.59 -2.04 -29.33 16 13 C 0.09 3.27 5.91 86.38 0.51 3.78 16 14 C -0.16 -4.66 10.20 71.98 0.73 -3.92 16 15 C 0.26 14.96 5.18 85.63 0.44 15.41 16 16 C -0.55 -32.59 9.39 25.60 0.24 -32.35 16 17 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 18 C 0.01 0.52 5.46 84.65 0.46 0.98 16 19 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16 20 Si 0.97 45.74 29.54 68.60 2.03 47.76 16 21 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 23 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 24 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 25 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.04 1.27 5.93 -2.39 -0.01 1.26 16 28 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.10 2.24 8.06 -2.39 -0.02 2.22 16 30 H 0.05 2.02 5.92 -2.38 -0.01 2.01 16 31 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 32 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 33 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 34 H 0.12 3.54 7.42 -2.91 -0.02 3.52 16 35 H 0.07 2.67 8.04 -2.39 -0.02 2.65 16 36 H 0.10 2.85 4.55 -2.38 -0.01 2.84 16 37 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 38 H 0.06 1.66 5.99 -2.39 -0.01 1.64 16 39 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.02 1.23 8.07 -2.39 -0.02 1.21 16 41 H 0.00 -0.24 7.35 -2.38 -0.02 -0.26 16 42 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -77.01 342.40 5.82 -71.19 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.99 Total: 14.52 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: 4.61 Total: -13.73 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -1.76 Total: -86.41 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -0.06 Total: -33.33 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -77.01 5.82 -71.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930463906.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.231 kcal (2) G-P(sol) polarization free energy of solvation -77.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds