Wall clock time and date at job start Mon Mar 30 2020 01:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.43975 * 2 1 4 4 C 1.53041 * 109.44156 * 119.92926 * 2 1 3 5 5 C 1.53383 * 107.91954 * 167.32920 * 4 2 1 6 6 N 1.46431 * 108.64742 * 291.71658 * 5 4 2 7 7 C 1.46900 * 110.99648 * 178.88231 * 6 5 4 8 8 C 1.52998 * 109.47376 * 73.99975 * 7 6 5 9 9 H 1.09006 * 109.47353 * 54.07060 * 8 7 6 10 10 O 1.42898 * 109.47190 * 294.07487 * 8 7 6 11 11 C 1.50701 * 109.47582 * 174.07205 * 8 7 6 12 12 H 1.08005 * 119.99318 * 0.02562 * 11 8 7 13 13 C 1.37869 * 120.00219 * 179.97438 * 11 8 7 14 14 N 1.31508 * 120.00371 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99789 * 180.02562 * 13 11 8 16 16 H 1.48499 * 109.47313 * 89.99991 * 15 13 11 17 17 H 1.48501 * 109.47042 * 209.99754 * 15 13 11 18 18 H 1.48500 * 109.47060 * 329.99507 * 15 13 11 19 19 C 1.39406 * 113.13229 * 53.32995 * 6 5 4 20 20 C 1.39623 * 117.64777 * 160.11574 * 19 6 5 21 21 C 1.37807 * 120.41831 * 179.73176 * 20 19 6 22 22 C 1.38319 * 119.95142 * 359.97438 * 21 20 19 23 23 C 1.38048 * 119.89056 * 0.12970 * 22 21 20 24 24 C 1.38371 * 122.96397 * 340.02842 * 19 6 5 25 25 H 1.08997 * 109.46678 * 300.06976 * 1 2 3 26 26 H 1.09000 * 109.46903 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47132 * 60.07216 * 1 2 3 28 28 H 1.08995 * 109.47364 * 60.00822 * 3 2 1 29 29 H 1.09003 * 109.47216 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47481 * 300.00223 * 3 2 1 31 31 H 1.08996 * 109.76955 * 286.93766 * 4 2 1 32 32 H 1.09001 * 109.77099 * 47.67105 * 4 2 1 33 33 H 1.09005 * 109.60441 * 51.45925 * 5 4 2 34 34 H 1.08998 * 109.60877 * 171.79327 * 5 4 2 35 35 H 1.09001 * 109.46558 * 193.99584 * 7 6 5 36 36 H 1.08998 * 109.47575 * 313.99586 * 7 6 5 37 37 H 0.96705 * 113.99562 * 300.00300 * 10 8 7 38 38 H 0.97003 * 120.00721 * 180.02562 * 14 13 11 39 39 H 1.07991 * 119.79063 * 359.74553 * 20 19 6 40 40 H 1.07993 * 120.02546 * 179.97438 * 21 20 19 41 41 H 1.08002 * 120.05253 * 180.14411 * 22 21 20 42 42 H 1.07995 * 119.75868 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0393 1.4427 0.0000 4 6 2.0395 -0.7200 1.2507 5 6 3.5392 -0.9830 1.0659 6 7 3.7132 -1.9748 0.0027 7 6 5.1370 -2.2464 -0.2360 8 6 5.6927 -3.0970 0.9079 9 1 5.0804 -3.9910 1.0266 10 8 5.6695 -2.3397 2.1195 11 6 7.1109 -3.4976 0.5930 12 1 7.5701 -3.1771 -0.3305 13 6 7.8225 -4.2723 1.4843 14 7 7.2636 -4.6621 2.6090 15 14 9.5808 -4.7682 1.0941 16 1 10.5139 -3.7418 1.6242 17 1 9.8769 -6.0794 1.7253 18 1 9.7493 -4.8779 -0.3772 19 6 3.0654 -1.6271 -1.1818 20 6 3.4915 -2.2456 -2.3588 21 6 2.8874 -1.9484 -3.5613 22 6 1.8518 -1.0327 -3.6061 23 6 1.4276 -0.4165 -2.4459 24 6 2.0318 -0.7086 -1.2331 25 1 -0.3632 0.5149 0.8894 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5127 -0.8906 28 1 1.6758 1.9563 0.8900 29 1 3.1293 1.4433 -0.0005 30 1 1.6757 1.9564 -0.8899 31 1 1.8804 -0.0927 2.1277 32 1 1.5108 -1.6654 1.3729 33 1 4.0415 -0.0565 0.7876 34 1 3.9614 -1.3627 1.9964 35 1 5.2514 -2.7839 -1.1773 36 1 5.6831 -1.3044 -0.2868 37 1 6.1945 -1.5282 2.0862 38 1 7.7643 -5.2069 3.2363 39 1 4.2994 -2.9614 -2.3267 40 1 3.2223 -2.4302 -4.4679 41 1 1.3756 -0.8003 -4.5472 42 1 0.6191 0.2985 -2.4834 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930503024.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:02 Heat of formation + Delta-G solvation = -23.597714 kcal Electronic energy + Delta-G solvation = -22131.483882 eV Core-core repulsion = 19075.986840 eV Total energy + Delta-G solvation = -3055.497042 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.61092 -36.98533 -36.46934 -34.71859 -32.18202 -30.14388 -29.82420 -29.48472 -27.25670 -27.07051 -24.42226 -23.06486 -22.76210 -21.26214 -19.99738 -18.44139 -17.30417 -16.53301 -15.58420 -15.53665 -14.67650 -14.57438 -14.35174 -14.17357 -13.92341 -13.67031 -13.52289 -12.94346 -12.84241 -12.55015 -12.15870 -11.93217 -11.83647 -11.80300 -11.57038 -11.26298 -11.12060 -11.04455 -10.90892 -10.81849 -10.54913 -10.27188 -9.99344 -9.88196 -9.62226 -8.98716 -8.61770 -8.47384 -8.07457 -7.14984 -6.04735 -4.23773 1.66926 1.76744 3.25319 3.32825 3.35182 3.97151 4.28884 4.44776 4.72149 4.81315 5.05397 5.19549 5.22430 5.28450 5.34336 5.50631 5.61547 5.63327 5.65833 5.74450 5.78923 5.84445 5.89165 6.04545 6.05016 6.11155 6.13930 6.21216 6.26019 6.33276 6.38534 6.47848 6.57388 6.64160 6.75471 6.83323 6.90516 7.15556 7.49498 7.71712 7.86325 7.87637 8.13345 8.78991 9.30131 9.52904 10.99384 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024997 B = 0.005071 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.853947 B = 5520.809113 C = 6326.516336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.022 4.022 3 C -0.136 4.136 4 C -0.113 4.113 5 C 0.046 3.954 6 N -0.484 5.484 7 C 0.026 3.974 8 C 0.236 3.764 9 H 0.065 0.935 10 O -0.559 6.559 11 C -0.575 4.575 12 H 0.056 0.944 13 C 0.082 3.918 14 N -0.857 5.857 15 Si 0.890 3.110 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.146 3.854 20 C -0.172 4.172 21 C -0.094 4.094 22 C -0.170 4.170 23 C -0.090 4.090 24 C -0.125 4.125 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.036 0.964 34 H 0.121 0.879 35 H 0.084 0.916 36 H 0.035 0.965 37 H 0.342 0.658 38 H 0.261 0.739 39 H 0.131 0.869 40 H 0.116 0.884 41 H 0.112 0.888 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.166 10.197 -7.098 16.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.022 4.022 3 C -0.193 4.193 4 C -0.151 4.151 5 C -0.079 4.079 6 N -0.195 5.195 7 C -0.099 4.099 8 C 0.178 3.822 9 H 0.083 0.917 10 O -0.362 6.362 11 C -0.613 4.613 12 H 0.074 0.926 13 C -0.125 4.125 14 N -0.492 5.492 15 Si 0.717 3.283 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.198 1.198 19 C 0.045 3.955 20 C -0.193 4.193 21 C -0.113 4.113 22 C -0.189 4.189 23 C -0.109 4.109 24 C -0.129 4.129 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.138 0.862 35 H 0.102 0.898 36 H 0.054 0.946 37 H 0.185 0.815 38 H 0.071 0.929 39 H 0.149 0.851 40 H 0.134 0.866 41 H 0.130 0.870 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.686 9.147 -6.454 16.183 hybrid contribution 1.649 0.605 -0.806 1.933 sum -10.036 9.752 -7.261 15.765 Atomic orbital electron populations 1.21901 0.94161 1.01919 1.01328 1.19447 0.95211 0.94665 0.92847 1.21936 1.01309 0.94769 1.01325 1.21836 0.96255 1.00617 0.96343 1.22612 0.95937 0.92504 0.96877 1.58054 1.14177 1.41911 1.05317 1.23481 0.82792 1.00218 1.03390 1.19424 0.94480 0.89205 0.79066 0.91724 1.86549 1.71571 1.37997 1.40092 1.21573 0.98937 1.35012 1.05768 0.92621 1.25005 0.98044 0.94736 0.94709 1.70073 1.36558 1.33960 1.08609 0.86664 0.84987 0.78048 0.78627 1.20542 1.21072 1.19805 1.18937 0.94542 0.92264 0.89776 1.21313 1.02920 1.03415 0.91618 1.20874 0.95814 0.97391 0.97222 1.20826 0.99812 1.00496 0.97779 1.20862 0.98941 0.99183 0.91878 1.19336 0.99442 0.99213 0.94914 0.92616 0.92501 0.92678 0.92538 0.92587 0.92835 0.91069 0.90863 0.94562 0.86170 0.89776 0.94650 0.81458 0.92918 0.85123 0.86604 0.86956 0.86727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.02 37.16 0.30 -1.20 16 2 C -0.02 -0.28 0.64 -155.59 -0.10 -0.38 16 3 C -0.14 -1.58 8.22 37.15 0.31 -1.28 16 4 C -0.11 -1.62 4.93 -26.51 -0.13 -1.75 16 5 C 0.05 0.78 5.02 -3.88 -0.02 0.76 16 6 N -0.48 -9.09 4.46 -171.28 -0.76 -9.86 16 7 C 0.03 0.53 4.47 -3.83 -0.02 0.51 16 8 C 0.24 5.80 3.03 -27.88 -0.08 5.72 16 9 H 0.07 1.81 8.14 -51.93 -0.42 1.39 16 10 O -0.56 -13.55 9.77 -35.23 -0.34 -13.89 16 11 C -0.57 -15.35 8.76 -34.44 -0.30 -15.65 16 12 H 0.06 1.45 7.74 -52.48 -0.41 1.04 16 13 C 0.08 2.24 5.40 -17.83 -0.10 2.14 16 14 N -0.86 -24.90 12.84 55.43 0.71 -24.19 16 15 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 19 C 0.15 2.53 5.83 -83.85 -0.49 2.04 16 20 C -0.17 -2.86 8.97 -39.22 -0.35 -3.21 16 21 C -0.09 -1.34 10.04 -39.71 -0.40 -1.74 16 22 C -0.17 -2.24 10.05 -39.62 -0.40 -2.63 16 23 C -0.09 -1.21 8.88 -39.51 -0.35 -1.56 16 24 C -0.13 -1.89 4.71 -104.38 -0.49 -2.38 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.54 6.52 -51.93 -0.34 0.20 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.72 6.61 -51.93 -0.34 0.37 16 30 H 0.05 0.58 8.04 -51.93 -0.42 0.16 16 31 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 32 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 33 H 0.04 0.59 6.41 -51.93 -0.33 0.26 16 34 H 0.12 2.26 5.46 -51.93 -0.28 1.97 16 35 H 0.08 1.69 5.08 -51.93 -0.26 1.43 16 36 H 0.04 0.71 7.98 -51.93 -0.41 0.29 16 37 H 0.34 7.38 9.04 45.56 0.41 7.79 16 38 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.13 2.21 5.68 -52.49 -0.30 1.92 16 40 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 41 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.11 1.29 6.51 -52.49 -0.34 0.95 16 LS Contribution 323.15 15.07 4.87 4.87 Total: -1.00 -29.32 323.15 -8.71 -38.03 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -5.54 Total: 9.84 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -2.62 Total: -20.60 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: -0.05 Total: -34.05 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.34 Total: -13.89 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.32 -8.71 -38.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930503024.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.433 kcal (2) G-P(sol) polarization free energy of solvation -29.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds