Wall clock time and date at job start Mon Mar 30 2020 01:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.43975 * 2 1 4 4 C 1.53041 * 109.44156 * 119.92926 * 2 1 3 5 5 C 1.53383 * 107.91954 * 167.32920 * 4 2 1 6 6 N 1.46431 * 108.64742 * 291.71658 * 5 4 2 7 7 C 1.46900 * 110.99648 * 178.88231 * 6 5 4 8 8 C 1.52998 * 109.47376 * 73.99975 * 7 6 5 9 9 H 1.09006 * 109.47353 * 54.07060 * 8 7 6 10 10 O 1.42898 * 109.47190 * 294.07487 * 8 7 6 11 11 C 1.50701 * 109.47582 * 174.07205 * 8 7 6 12 12 H 1.08005 * 119.99318 * 0.02562 * 11 8 7 13 13 C 1.37869 * 120.00219 * 179.97438 * 11 8 7 14 14 N 1.31508 * 120.00371 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99789 * 180.02562 * 13 11 8 16 16 H 1.48499 * 109.47313 * 89.99991 * 15 13 11 17 17 H 1.48501 * 109.47042 * 209.99754 * 15 13 11 18 18 H 1.48500 * 109.47060 * 329.99507 * 15 13 11 19 19 C 1.39406 * 113.13229 * 53.32995 * 6 5 4 20 20 C 1.39623 * 117.64777 * 160.11574 * 19 6 5 21 21 C 1.37807 * 120.41831 * 179.73176 * 20 19 6 22 22 C 1.38319 * 119.95142 * 359.97438 * 21 20 19 23 23 C 1.38048 * 119.89056 * 0.12970 * 22 21 20 24 24 C 1.38371 * 122.96397 * 340.02842 * 19 6 5 25 25 H 1.08997 * 109.46678 * 300.06976 * 1 2 3 26 26 H 1.09000 * 109.46903 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47132 * 60.07216 * 1 2 3 28 28 H 1.08995 * 109.47364 * 60.00822 * 3 2 1 29 29 H 1.09003 * 109.47216 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47481 * 300.00223 * 3 2 1 31 31 H 1.08996 * 109.76955 * 286.93766 * 4 2 1 32 32 H 1.09001 * 109.77099 * 47.67105 * 4 2 1 33 33 H 1.09005 * 109.60441 * 51.45925 * 5 4 2 34 34 H 1.08998 * 109.60877 * 171.79327 * 5 4 2 35 35 H 1.09001 * 109.46558 * 193.99584 * 7 6 5 36 36 H 1.08998 * 109.47575 * 313.99586 * 7 6 5 37 37 H 0.96705 * 113.99562 * 300.00300 * 10 8 7 38 38 H 0.97003 * 120.00721 * 180.02562 * 14 13 11 39 39 H 1.07991 * 119.79063 * 359.74553 * 20 19 6 40 40 H 1.07993 * 120.02546 * 179.97438 * 21 20 19 41 41 H 1.08002 * 120.05253 * 180.14411 * 22 21 20 42 42 H 1.07995 * 119.75868 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0393 1.4427 0.0000 4 6 2.0395 -0.7200 1.2507 5 6 3.5392 -0.9830 1.0659 6 7 3.7132 -1.9748 0.0027 7 6 5.1370 -2.2464 -0.2360 8 6 5.6927 -3.0970 0.9079 9 1 5.0804 -3.9910 1.0266 10 8 5.6695 -2.3397 2.1195 11 6 7.1109 -3.4976 0.5930 12 1 7.5701 -3.1771 -0.3305 13 6 7.8225 -4.2723 1.4843 14 7 7.2636 -4.6621 2.6090 15 14 9.5808 -4.7682 1.0941 16 1 10.5139 -3.7418 1.6242 17 1 9.8769 -6.0794 1.7253 18 1 9.7493 -4.8779 -0.3772 19 6 3.0654 -1.6271 -1.1818 20 6 3.4915 -2.2456 -2.3588 21 6 2.8874 -1.9484 -3.5613 22 6 1.8518 -1.0327 -3.6061 23 6 1.4276 -0.4165 -2.4459 24 6 2.0318 -0.7086 -1.2331 25 1 -0.3632 0.5149 0.8894 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5127 -0.8906 28 1 1.6758 1.9563 0.8900 29 1 3.1293 1.4433 -0.0005 30 1 1.6757 1.9564 -0.8899 31 1 1.8804 -0.0927 2.1277 32 1 1.5108 -1.6654 1.3729 33 1 4.0415 -0.0565 0.7876 34 1 3.9614 -1.3627 1.9964 35 1 5.2514 -2.7839 -1.1773 36 1 5.6831 -1.3044 -0.2868 37 1 6.1945 -1.5282 2.0862 38 1 7.7643 -5.2069 3.2363 39 1 4.2994 -2.9614 -2.3267 40 1 3.2223 -2.4302 -4.4679 41 1 1.3756 -0.8003 -4.5472 42 1 0.6191 0.2985 -2.4834 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930503024.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:01 Heat of formation + Delta-G solvation = -41.716701 kcal Electronic energy + Delta-G solvation = -22132.269580 eV Core-core repulsion = 19075.986840 eV Total energy + Delta-G solvation = -3056.282740 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.82464 -38.55050 -37.58854 -36.35172 -34.28305 -31.44072 -31.01461 -30.91069 -28.67971 -28.11800 -26.18247 -24.27752 -23.94318 -22.85645 -21.45011 -19.57390 -19.14293 -17.89652 -16.94483 -16.87255 -16.66949 -16.25088 -15.77162 -15.35556 -15.22968 -14.93893 -14.69028 -14.54147 -14.09234 -13.87193 -13.52653 -13.27867 -12.96255 -12.90945 -12.80095 -12.79516 -12.75150 -12.56773 -12.42758 -12.25493 -11.97627 -11.67451 -11.25591 -11.22984 -11.05437 -10.80070 -10.73099 -9.91144 -9.59118 -8.46126 -8.15425 -6.42038 0.53944 0.59971 1.39825 1.40658 1.51443 2.36488 2.77378 3.08414 3.10841 3.67632 3.75247 3.91739 4.01254 4.18832 4.29378 4.33993 4.37770 4.38864 4.44986 4.53952 4.61981 4.65162 4.73191 4.84798 4.92246 4.93857 4.98162 5.05630 5.07129 5.16467 5.23529 5.28606 5.32628 5.44584 5.52303 5.59971 5.64563 5.72868 5.74358 5.99075 6.05435 6.28326 6.56417 6.69979 7.30258 7.49347 8.89075 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024997 B = 0.005071 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.853947 B = 5520.809113 C = 6326.516336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.021 4.021 3 C -0.132 4.132 4 C -0.108 4.108 5 C 0.049 3.951 6 N -0.501 5.501 7 C 0.046 3.954 8 C 0.242 3.758 9 H 0.020 0.980 10 O -0.568 6.568 11 C -0.588 4.588 12 H 0.060 0.940 13 C 0.029 3.971 14 N -0.898 5.898 15 Si 0.961 3.039 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.265 1.265 19 C 0.112 3.888 20 C -0.194 4.194 21 C -0.099 4.099 22 C -0.161 4.161 23 C -0.090 4.090 24 C -0.130 4.130 25 H 0.071 0.929 26 H 0.044 0.956 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.037 0.963 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.055 0.945 33 H 0.040 0.960 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.036 0.964 37 H 0.353 0.647 38 H 0.262 0.738 39 H 0.114 0.886 40 H 0.137 0.863 41 H 0.146 0.854 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.285 12.136 -8.851 19.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.021 4.021 3 C -0.189 4.189 4 C -0.146 4.146 5 C -0.077 4.077 6 N -0.212 5.212 7 C -0.079 4.079 8 C 0.184 3.816 9 H 0.038 0.962 10 O -0.372 6.372 11 C -0.626 4.626 12 H 0.078 0.922 13 C -0.174 4.174 14 N -0.534 5.534 15 Si 0.785 3.215 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.190 1.190 19 C 0.013 3.987 20 C -0.215 4.215 21 C -0.117 4.117 22 C -0.180 4.180 23 C -0.108 4.108 24 C -0.133 4.133 25 H 0.090 0.910 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.054 0.946 37 H 0.197 0.803 38 H 0.071 0.929 39 H 0.132 0.868 40 H 0.155 0.845 41 H 0.164 0.836 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.818 11.104 -8.231 18.851 hybrid contribution 1.915 0.030 -0.316 1.941 sum -10.903 11.134 -8.547 17.774 Atomic orbital electron populations 1.21870 0.92154 1.01731 1.03082 1.19509 0.96703 0.94995 0.90926 1.21900 1.00172 0.93863 1.02952 1.21819 0.93942 1.00466 0.98350 1.22517 0.97942 0.91989 0.95242 1.58003 1.12884 1.43543 1.06812 1.23037 0.84457 0.99211 1.01237 1.19133 0.93253 0.88730 0.80475 0.96225 1.86501 1.71939 1.38566 1.40205 1.21955 0.99927 1.34886 1.05826 0.92225 1.25866 1.02432 0.94639 0.94435 1.70215 1.38401 1.35020 1.09812 0.85547 0.79614 0.77660 0.78682 1.19675 1.20907 1.18959 1.19122 0.96052 0.94346 0.89212 1.21361 1.03485 1.03849 0.92794 1.21159 0.95942 0.97656 0.96950 1.21262 0.98647 0.98907 0.99176 1.21232 0.99177 0.99324 0.91110 1.19669 0.98538 0.98417 0.96678 0.90966 0.93665 0.90855 0.90730 0.94352 0.91406 0.89010 0.92634 0.94217 0.88752 0.89940 0.94621 0.80251 0.92921 0.86807 0.84469 0.83613 0.83706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 8.02 71.98 0.58 -1.89 16 2 C -0.02 -0.51 0.64 -52.88 -0.03 -0.54 16 3 C -0.13 -2.70 8.22 71.98 0.59 -2.10 16 4 C -0.11 -3.06 4.93 30.74 0.15 -2.91 16 5 C 0.05 1.70 5.02 86.52 0.43 2.13 16 6 N -0.50 -19.66 4.46 -695.81 -3.11 -22.76 16 7 C 0.05 1.98 4.47 86.30 0.39 2.37 16 8 C 0.24 12.57 3.03 29.85 0.09 12.67 16 9 H 0.02 1.20 8.14 -2.38 -0.02 1.18 16 10 O -0.57 -28.95 9.77 -148.98 -1.46 -30.40 16 11 C -0.59 -32.36 8.76 25.60 0.22 -32.14 16 12 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 13 C 0.03 1.63 5.40 84.65 0.46 2.09 16 14 N -0.90 -53.85 12.84 21.44 0.28 -53.57 16 15 Si 0.96 43.30 29.54 68.60 2.03 45.33 16 16 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 18 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 19 C 0.11 3.94 5.83 38.30 0.22 4.16 16 20 C -0.19 -6.53 8.97 22.50 0.20 -6.32 16 21 C -0.10 -2.63 10.04 22.19 0.22 -2.41 16 22 C -0.16 -3.68 10.05 22.24 0.22 -3.46 16 23 C -0.09 -2.12 8.88 22.32 0.20 -1.92 16 24 C -0.13 -3.71 4.71 -19.71 -0.09 -3.80 16 25 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 1.11 6.52 -2.39 -0.02 1.10 16 28 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.04 0.92 6.61 -2.39 -0.02 0.90 16 30 H 0.07 1.20 8.04 -2.39 -0.02 1.18 16 31 H 0.09 2.17 8.09 -2.39 -0.02 2.15 16 32 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 33 H 0.04 1.33 6.41 -2.38 -0.02 1.31 16 34 H 0.09 3.75 5.46 -2.39 -0.01 3.74 16 35 H 0.08 3.52 5.08 -2.39 -0.01 3.51 16 36 H 0.04 1.49 7.98 -2.39 -0.02 1.47 16 37 H 0.35 15.92 9.04 -74.05 -0.67 15.25 16 38 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 39 H 0.11 4.08 5.68 -2.92 -0.02 4.06 16 40 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 41 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 42 H 0.15 2.52 6.51 -2.91 -0.02 2.50 16 Total: -1.00 -65.39 323.15 1.95 -63.44 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: 0.35 Total: 32.05 kcal Atomic # 6 Polarization: -37.95 SS G_CDS: 3.86 Total: -34.09 kcal Atomic # 7 Polarization: -73.50 SS G_CDS: -2.83 Total: -76.33 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -1.46 Total: -30.40 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -65.39 1.95 -63.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930503024.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.727 kcal (2) G-P(sol) polarization free energy of solvation -65.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds