Wall clock time and date at job start Mon Mar 30 2020 01:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 120.00034 * 2 1 4 4 N 1.46900 * 109.46870 * 124.15507 * 3 2 1 5 5 C 1.46893 * 111.00198 * 301.08688 * 4 3 2 6 6 C 1.50703 * 109.47009 * 288.31283 * 5 4 3 7 7 H 1.07994 * 119.99921 * 355.64602 * 6 5 4 8 8 C 1.37883 * 119.99738 * 175.65326 * 6 5 4 9 9 N 1.31517 * 119.99671 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 120.00045 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.46795 * 90.00610 * 10 8 6 12 12 H 1.48503 * 109.46899 * 210.00286 * 10 8 6 13 13 H 1.48493 * 109.47332 * 330.00304 * 10 8 6 14 14 C 1.46903 * 110.99734 * 65.04314 * 4 3 2 15 15 C 1.50694 * 109.47575 * 66.04293 * 14 4 3 16 16 C 1.38289 * 119.97740 * 259.97748 * 15 14 4 17 17 C 1.38239 * 120.11340 * 179.97438 * 16 15 14 18 18 C 1.38166 * 120.05957 * 0.02562 * 17 16 15 19 19 C 1.38714 * 119.94093 * 0.02562 * 18 17 16 20 20 O 1.35895 * 120.05197 * 180.25302 * 19 18 17 21 21 C 1.42895 * 117.00437 * 359.72958 * 20 19 18 22 22 C 1.38131 * 119.97040 * 79.99878 * 15 14 4 23 23 C 1.50698 * 120.02629 * 359.97438 * 22 15 14 24 24 H 1.07999 * 120.00357 * 179.97438 * 1 2 3 25 25 H 1.08004 * 119.99987 * 359.97438 * 1 2 3 26 26 H 1.07996 * 119.99759 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47288 * 4.15815 * 3 2 1 28 28 H 1.08998 * 109.47506 * 244.15571 * 3 2 1 29 29 H 1.09003 * 109.47254 * 48.31408 * 5 4 3 30 30 H 1.09002 * 109.47220 * 168.30882 * 5 4 3 31 31 H 0.97003 * 119.99808 * 179.97438 * 9 8 6 32 32 H 1.09005 * 109.47256 * 306.04307 * 14 4 3 33 33 H 1.09001 * 109.46912 * 186.04662 * 14 4 3 34 34 H 1.08004 * 119.94089 * 359.97438 * 16 15 14 35 35 H 1.08003 * 119.96970 * 180.02562 * 17 16 15 36 36 H 1.08000 * 120.02770 * 180.02562 * 18 17 16 37 37 H 1.08997 * 109.47194 * 59.99531 * 21 20 19 38 38 H 1.09003 * 109.47485 * 180.02562 * 21 20 19 39 39 H 1.08997 * 109.47030 * 299.99696 * 21 20 19 40 40 H 1.09003 * 109.47252 * 270.01878 * 23 22 15 41 41 H 1.08999 * 109.47424 * 30.02377 * 23 22 15 42 42 H 1.08998 * 109.46738 * 150.02075 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9817 1.3403 1.1461 5 6 2.2501 1.1944 2.4115 6 6 1.4739 2.4556 2.6912 7 1 1.5743 3.3080 2.0358 8 6 0.6357 2.5211 3.7840 9 7 -0.0421 3.6214 4.0278 10 14 0.4617 1.0464 4.9174 11 1 1.4736 1.1327 6.0008 12 1 -0.8995 1.0363 5.5111 13 1 0.6725 -0.2020 4.1414 14 6 4.0228 0.3118 1.0183 15 6 4.9063 0.6348 -0.1590 16 6 4.7172 -0.0167 -1.3641 17 6 5.5257 0.2778 -2.4460 18 6 6.5255 1.2238 -2.3257 19 6 6.7179 1.8779 -1.1177 20 8 7.6973 2.8125 -0.9983 21 6 8.4955 3.0674 -2.1558 22 6 5.9047 1.5811 -0.0334 23 6 6.1102 2.2907 1.2801 24 1 -0.5401 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.3576 2.1323 0.0745 28 1 2.6332 1.3958 -0.9248 29 1 1.5615 0.3527 2.3382 30 1 2.9572 1.0158 3.2216 31 1 -0.6321 3.6674 4.7964 32 1 3.5556 -0.6612 0.8658 33 1 4.6234 0.2879 1.9276 34 1 3.9365 -0.7568 -1.4600 35 1 5.3757 -0.2321 -3.3862 36 1 7.1566 1.4538 -3.1714 37 1 7.8570 3.4143 -2.9682 38 1 9.2374 3.8317 -1.9245 39 1 9.0012 2.1502 -2.4575 40 1 5.5016 3.1947 1.3038 41 1 5.8163 1.6332 2.0982 42 1 7.1615 2.5575 1.3882 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930541876.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:27 Heat of formation + Delta-G solvation = 15.719135 kcal Electronic energy + Delta-G solvation = -21588.240798 eV Core-core repulsion = 18534.448662 eV Total energy + Delta-G solvation = -3053.792136 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.23270 -38.22562 -36.62626 -33.12664 -32.69762 -31.91410 -30.48692 -27.79032 -27.58407 -26.62182 -25.87798 -23.54416 -21.62294 -20.87535 -20.47391 -18.79278 -17.44111 -16.64173 -16.38776 -15.76859 -15.56075 -15.14175 -14.79187 -14.19690 -14.07536 -13.75524 -13.61891 -13.08273 -12.97517 -12.61851 -12.33606 -12.06734 -11.95285 -11.83325 -11.49892 -11.37163 -11.12949 -10.96985 -10.96245 -10.74376 -10.60157 -10.41499 -10.25163 -9.83010 -9.30548 -8.80788 -8.51505 -8.44752 -7.93875 -7.30980 -6.00454 -3.96503 1.48753 1.61418 2.82250 3.30654 3.32459 3.38262 3.40273 3.88624 4.45865 4.84886 4.88914 5.00184 5.05556 5.08365 5.23090 5.32111 5.35546 5.42506 5.46502 5.50458 5.58886 5.70894 5.90431 5.99000 6.03642 6.10975 6.14259 6.31148 6.38616 6.49561 6.60649 6.65155 6.66701 6.83359 6.87892 7.01498 7.04686 7.13215 7.30467 7.51058 7.65710 7.93996 8.06332 8.71052 9.10014 9.62111 11.12886 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022081 B = 0.004994 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.772930 B = 5605.729093 C = 6309.214983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.183 4.183 3 C 0.088 3.912 4 N -0.509 5.509 5 C 0.158 3.842 6 C -0.500 4.500 7 H 0.080 0.920 8 C 0.069 3.931 9 N -0.902 5.902 10 Si 0.869 3.131 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.267 1.267 14 C 0.083 3.917 15 C -0.032 4.032 16 C -0.146 4.146 17 C -0.093 4.093 18 C -0.212 4.212 19 C 0.118 3.882 20 O -0.314 6.314 21 C 0.029 3.971 22 C -0.086 4.086 23 C -0.101 4.101 24 H 0.084 0.916 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.000 1.000 30 H 0.019 0.981 31 H 0.262 0.738 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.053 0.947 38 H 0.096 0.904 39 H 0.051 0.949 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.099 -6.894 -12.632 19.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.203 4.203 3 C -0.040 4.040 4 N -0.231 5.231 5 C 0.032 3.968 6 C -0.538 4.538 7 H 0.098 0.902 8 C -0.132 4.132 9 N -0.541 5.541 10 Si 0.697 3.303 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.192 1.192 14 C -0.045 4.045 15 C -0.032 4.032 16 C -0.165 4.165 17 C -0.112 4.112 18 C -0.231 4.231 19 C 0.073 3.927 20 O -0.228 6.228 21 C -0.066 4.066 22 C -0.088 4.088 23 C -0.157 4.157 24 H 0.103 0.897 25 H 0.119 0.881 26 H 0.113 0.887 27 H 0.106 0.894 28 H 0.085 0.915 29 H 0.018 0.982 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.099 0.901 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.071 0.929 38 H 0.114 0.886 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.267 -6.216 -12.298 19.128 hybrid contribution -0.590 -1.693 0.321 1.821 sum 12.677 -7.909 -11.976 19.149 Atomic orbital electron populations 1.23775 0.96094 1.01332 1.00619 1.23564 0.96714 0.99800 1.00182 1.21294 0.94674 0.94398 0.93604 1.62269 1.12858 1.44586 1.03383 1.20262 0.92757 0.97581 0.86200 1.20982 1.23117 0.98694 1.11018 0.90200 1.24859 0.95439 0.95500 0.97362 1.69895 1.28702 1.26665 1.28884 0.86945 0.77532 0.84231 0.81588 1.20270 1.21328 1.19202 1.21121 0.93605 0.94129 0.95624 1.19596 0.94174 0.94286 0.95180 1.20949 1.00727 1.02008 0.92831 1.20769 0.94923 0.97100 0.98367 1.21087 1.03010 1.02096 0.96888 1.18819 0.89668 0.90302 0.93881 1.86074 1.44140 1.55326 1.37224 1.22988 0.94406 1.01209 0.88006 1.19127 0.95568 0.98757 0.95304 1.20601 1.01264 1.00828 0.93035 0.89729 0.88105 0.88733 0.89392 0.91507 0.98231 0.96253 0.92793 0.94568 0.90090 0.86355 0.86348 0.86084 0.92879 0.88555 0.93059 0.90220 0.91344 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.09 14.32 29.01 0.42 -2.67 16 2 C -0.18 -3.18 7.39 -36.03 -0.27 -3.45 16 3 C 0.09 1.68 5.44 -4.98 -0.03 1.65 16 4 N -0.51 -10.36 4.65 -238.96 -1.11 -11.47 16 5 C 0.16 3.74 3.67 -4.98 -0.02 3.73 16 6 C -0.50 -13.98 9.10 -34.44 -0.31 -14.29 16 7 H 0.08 2.46 7.87 -52.49 -0.41 2.05 16 8 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 9 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 10 Si 0.87 21.50 27.56 -169.99 -4.68 16.82 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 13 H -0.27 -6.39 6.42 56.52 0.36 -6.03 16 14 C 0.08 1.42 4.32 -4.98 -0.02 1.39 16 15 C -0.03 -0.50 4.58 -104.65 -0.48 -0.98 16 16 C -0.15 -2.03 8.59 -39.56 -0.34 -2.37 16 17 C -0.09 -1.16 10.04 -39.61 -0.40 -1.56 16 18 C -0.21 -2.66 9.04 -39.43 -0.36 -3.02 16 19 C 0.12 1.72 6.66 -39.22 -0.26 1.45 16 20 O -0.31 -4.23 9.55 -19.41 -0.19 -4.42 16 21 C 0.03 0.26 9.81 101.05 0.99 1.25 16 22 C -0.09 -1.38 5.89 -104.47 -0.62 -1.99 16 23 C -0.10 -1.60 9.38 36.00 0.34 -1.26 16 24 H 0.08 1.27 8.06 -52.49 -0.42 0.85 16 25 H 0.10 1.82 7.84 -52.48 -0.41 1.41 16 26 H 0.09 1.51 6.83 -52.49 -0.36 1.15 16 27 H 0.09 1.89 7.03 -51.93 -0.37 1.52 16 28 H 0.07 1.18 6.36 -51.93 -0.33 0.85 16 29 H 0.00 0.00 5.43 -51.93 -0.28 -0.28 16 30 H 0.02 0.46 7.46 -51.93 -0.39 0.08 16 31 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 32 H 0.04 0.59 6.24 -51.93 -0.32 0.26 16 33 H 0.08 1.36 6.13 -51.93 -0.32 1.04 16 34 H 0.12 1.50 8.03 -52.48 -0.42 1.08 16 35 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 36 H 0.12 1.21 6.30 -52.49 -0.33 0.88 16 37 H 0.05 0.43 7.65 -51.93 -0.40 0.03 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.39 7.67 -51.93 -0.40 -0.01 16 40 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.07 1.08 6.12 -51.93 -0.32 0.76 16 42 H 0.06 0.84 7.54 -51.93 -0.39 0.45 16 LS Contribution 335.26 15.07 5.05 5.05 Total: -1.00 -30.92 335.26 -7.92 -38.84 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.31 Total: 2.20 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -1.45 Total: -20.22 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: -0.34 Total: -38.27 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -0.19 Total: -4.42 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.68 Total: 16.82 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.92 -7.92 -38.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930541876.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.554 kcal (2) G-P(sol) polarization free energy of solvation -30.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds