Wall clock time and date at job start Mon Mar 30 2020 01:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 120.00034 * 2 1 4 4 N 1.46900 * 109.46870 * 124.15507 * 3 2 1 5 5 C 1.46893 * 111.00198 * 301.08688 * 4 3 2 6 6 C 1.50703 * 109.47009 * 288.31283 * 5 4 3 7 7 H 1.07994 * 119.99921 * 355.64602 * 6 5 4 8 8 C 1.37883 * 119.99738 * 175.65326 * 6 5 4 9 9 N 1.31517 * 119.99671 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 120.00045 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.46795 * 90.00610 * 10 8 6 12 12 H 1.48503 * 109.46899 * 210.00286 * 10 8 6 13 13 H 1.48493 * 109.47332 * 330.00304 * 10 8 6 14 14 C 1.46903 * 110.99734 * 65.04314 * 4 3 2 15 15 C 1.50694 * 109.47575 * 66.04293 * 14 4 3 16 16 C 1.38289 * 119.97740 * 259.97748 * 15 14 4 17 17 C 1.38239 * 120.11340 * 179.97438 * 16 15 14 18 18 C 1.38166 * 120.05957 * 0.02562 * 17 16 15 19 19 C 1.38714 * 119.94093 * 0.02562 * 18 17 16 20 20 O 1.35895 * 120.05197 * 180.25302 * 19 18 17 21 21 C 1.42895 * 117.00437 * 359.72958 * 20 19 18 22 22 C 1.38131 * 119.97040 * 79.99878 * 15 14 4 23 23 C 1.50698 * 120.02629 * 359.97438 * 22 15 14 24 24 H 1.07999 * 120.00357 * 179.97438 * 1 2 3 25 25 H 1.08004 * 119.99987 * 359.97438 * 1 2 3 26 26 H 1.07996 * 119.99759 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47288 * 4.15815 * 3 2 1 28 28 H 1.08998 * 109.47506 * 244.15571 * 3 2 1 29 29 H 1.09003 * 109.47254 * 48.31408 * 5 4 3 30 30 H 1.09002 * 109.47220 * 168.30882 * 5 4 3 31 31 H 0.97003 * 119.99808 * 179.97438 * 9 8 6 32 32 H 1.09005 * 109.47256 * 306.04307 * 14 4 3 33 33 H 1.09001 * 109.46912 * 186.04662 * 14 4 3 34 34 H 1.08004 * 119.94089 * 359.97438 * 16 15 14 35 35 H 1.08003 * 119.96970 * 180.02562 * 17 16 15 36 36 H 1.08000 * 120.02770 * 180.02562 * 18 17 16 37 37 H 1.08997 * 109.47194 * 59.99531 * 21 20 19 38 38 H 1.09003 * 109.47485 * 180.02562 * 21 20 19 39 39 H 1.08997 * 109.47030 * 299.99696 * 21 20 19 40 40 H 1.09003 * 109.47252 * 270.01878 * 23 22 15 41 41 H 1.08999 * 109.47424 * 30.02377 * 23 22 15 42 42 H 1.08998 * 109.46738 * 150.02075 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9817 1.3403 1.1461 5 6 2.2501 1.1944 2.4115 6 6 1.4739 2.4556 2.6912 7 1 1.5743 3.3080 2.0358 8 6 0.6357 2.5211 3.7840 9 7 -0.0421 3.6214 4.0278 10 14 0.4617 1.0464 4.9174 11 1 1.4736 1.1327 6.0008 12 1 -0.8995 1.0363 5.5111 13 1 0.6725 -0.2020 4.1414 14 6 4.0228 0.3118 1.0183 15 6 4.9063 0.6348 -0.1590 16 6 4.7172 -0.0167 -1.3641 17 6 5.5257 0.2778 -2.4460 18 6 6.5255 1.2238 -2.3257 19 6 6.7179 1.8779 -1.1177 20 8 7.6973 2.8125 -0.9983 21 6 8.4955 3.0674 -2.1558 22 6 5.9047 1.5811 -0.0334 23 6 6.1102 2.2907 1.2801 24 1 -0.5401 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.3576 2.1323 0.0745 28 1 2.6332 1.3958 -0.9248 29 1 1.5615 0.3527 2.3382 30 1 2.9572 1.0158 3.2216 31 1 -0.6321 3.6674 4.7964 32 1 3.5556 -0.6612 0.8658 33 1 4.6234 0.2879 1.9276 34 1 3.9365 -0.7568 -1.4600 35 1 5.3757 -0.2321 -3.3862 36 1 7.1566 1.4538 -3.1714 37 1 7.8570 3.4143 -2.9682 38 1 9.2374 3.8317 -1.9245 39 1 9.0012 2.1502 -2.4575 40 1 5.5016 3.1947 1.3038 41 1 5.8163 1.6332 2.0982 42 1 7.1615 2.5575 1.3882 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930541876.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:26 Heat of formation + Delta-G solvation = -3.443191 kcal Electronic energy + Delta-G solvation = -21589.071739 eV Core-core repulsion = 18534.448662 eV Total energy + Delta-G solvation = -3054.623077 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.27883 -39.49659 -37.88644 -34.76551 -34.33534 -33.30257 -31.80769 -29.55395 -28.41651 -27.90562 -27.12962 -25.21167 -22.70214 -22.56375 -21.66381 -20.20923 -18.85002 -18.38814 -17.49162 -16.88912 -16.63220 -16.47108 -16.25409 -15.98179 -15.50671 -14.96865 -14.83601 -14.52307 -14.25707 -14.12148 -13.84481 -13.34448 -13.20283 -13.00391 -12.90843 -12.76746 -12.54516 -12.38437 -12.24626 -12.17044 -12.04991 -11.84936 -11.80570 -11.51850 -11.35266 -10.73749 -10.22036 -9.57124 -8.98990 -8.88438 -8.23329 -6.24694 0.41300 0.56471 1.35809 1.36740 1.43962 1.47355 2.37212 2.45019 2.79655 3.11076 3.48437 3.87589 3.94003 4.07870 4.12509 4.23971 4.30684 4.35919 4.40921 4.43714 4.52578 4.57121 4.67903 4.76349 4.83627 4.87993 4.93693 4.97274 4.99736 5.02836 5.05902 5.23809 5.41368 5.47611 5.57371 5.60056 5.71467 5.76375 5.86542 5.94371 6.10533 6.42937 6.55469 6.70513 6.81274 7.38274 8.93757 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022081 B = 0.004994 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.772930 B = 5605.729093 C = 6309.214983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.185 4.185 3 C 0.094 3.906 4 N -0.525 5.525 5 C 0.171 3.829 6 C -0.501 4.501 7 H 0.032 0.968 8 C 0.010 3.990 9 N -0.951 5.951 10 Si 0.940 3.060 11 H -0.267 1.267 12 H -0.285 1.285 13 H -0.248 1.248 14 C 0.088 3.912 15 C -0.046 4.046 16 C -0.152 4.152 17 C -0.087 4.087 18 C -0.208 4.208 19 C 0.109 3.891 20 O -0.336 6.336 21 C 0.020 3.980 22 C -0.116 4.116 23 C -0.092 4.092 24 H 0.113 0.887 25 H 0.080 0.920 26 H 0.120 0.880 27 H 0.049 0.951 28 H 0.081 0.919 29 H 0.002 0.998 30 H 0.022 0.978 31 H 0.264 0.736 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.133 0.867 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.061 0.939 38 H 0.115 0.885 39 H 0.067 0.933 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.365 -9.713 -14.106 22.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.205 4.205 3 C -0.033 4.033 4 N -0.247 5.247 5 C 0.044 3.956 6 C -0.540 4.540 7 H 0.051 0.949 8 C -0.186 4.186 9 N -0.592 5.592 10 Si 0.764 3.236 11 H -0.192 1.192 12 H -0.210 1.210 13 H -0.172 1.172 14 C -0.040 4.040 15 C -0.047 4.047 16 C -0.170 4.170 17 C -0.105 4.105 18 C -0.227 4.227 19 C 0.064 3.936 20 O -0.250 6.250 21 C -0.075 4.075 22 C -0.117 4.117 23 C -0.149 4.149 24 H 0.131 0.869 25 H 0.099 0.901 26 H 0.138 0.862 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.020 0.980 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.151 0.849 35 H 0.170 0.830 36 H 0.168 0.832 37 H 0.080 0.920 38 H 0.133 0.867 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.559 -9.040 -13.799 22.002 hybrid contribution -0.889 -0.689 0.629 1.289 sum 13.670 -9.729 -13.170 21.330 Atomic orbital electron populations 1.23911 0.96224 1.01773 1.00060 1.23558 0.96772 0.99562 1.00602 1.21135 0.94167 0.94357 0.93684 1.62093 1.13357 1.46902 1.02352 1.19969 0.92488 0.95038 0.88093 1.21177 1.23595 0.99117 1.10104 0.94923 1.25752 0.95031 0.98657 0.99186 1.70059 1.29962 1.29296 1.29927 0.85823 0.77665 0.80731 0.79419 1.19248 1.21045 1.17193 1.21098 0.92669 0.93607 0.96581 1.19509 0.94292 0.95353 0.95513 1.21145 1.01395 1.02079 0.92420 1.21171 0.93775 0.96434 0.99119 1.21452 1.03109 1.01217 0.96897 1.18963 0.89790 0.90697 0.94165 1.86043 1.44295 1.55076 1.39634 1.23306 0.94475 1.02679 0.87003 1.19225 0.96985 0.99772 0.95695 1.20452 1.01131 0.99579 0.93710 0.86924 0.90107 0.86245 0.93200 0.90086 0.97995 0.95983 0.92671 0.93078 0.90377 0.84948 0.83041 0.83181 0.92010 0.86717 0.91439 0.93002 0.91879 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.99 14.32 67.78 0.97 -5.01 16 2 C -0.19 -6.15 7.39 25.65 0.19 -5.96 16 3 C 0.09 3.62 5.44 85.56 0.47 4.08 16 4 N -0.52 -21.57 4.65 -909.95 -4.23 -25.80 16 5 C 0.17 8.13 3.67 85.56 0.31 8.44 16 6 C -0.50 -29.14 9.10 25.60 0.23 -28.90 16 7 H 0.03 2.15 7.87 -2.91 -0.02 2.13 16 8 C 0.01 0.61 5.47 84.66 0.46 1.08 16 9 N -0.95 -60.19 13.96 21.45 0.30 -59.89 16 10 Si 0.94 44.37 27.56 68.60 1.89 46.26 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 13 H -0.25 -10.89 6.42 99.48 0.64 -10.25 16 14 C 0.09 2.90 4.32 85.55 0.37 3.27 16 15 C -0.05 -1.39 4.58 -19.88 -0.09 -1.49 16 16 C -0.15 -3.79 8.59 22.28 0.19 -3.60 16 17 C -0.09 -1.84 10.04 22.25 0.22 -1.62 16 18 C -0.21 -4.58 9.04 22.37 0.20 -4.38 16 19 C 0.11 3.01 6.66 22.51 0.15 3.16 16 20 O -0.34 -8.68 9.55 -92.37 -0.88 -9.56 16 21 C 0.02 0.30 9.81 113.37 1.11 1.41 16 22 C -0.12 -3.65 5.89 -19.77 -0.12 -3.77 16 23 C -0.09 -3.04 9.38 71.24 0.67 -2.37 16 24 H 0.11 3.07 8.06 -2.91 -0.02 3.04 16 25 H 0.08 2.96 7.84 -2.91 -0.02 2.94 16 26 H 0.12 3.40 6.83 -2.91 -0.02 3.38 16 27 H 0.05 2.26 7.03 -2.39 -0.02 2.24 16 28 H 0.08 2.84 6.36 -2.39 -0.02 2.82 16 29 H 0.00 0.11 5.43 -2.39 -0.01 0.10 16 30 H 0.02 1.04 7.46 -2.39 -0.02 1.02 16 31 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 32 H 0.05 1.53 6.24 -2.38 -0.01 1.52 16 33 H 0.08 2.60 6.13 -2.39 -0.01 2.58 16 34 H 0.13 2.88 8.03 -2.91 -0.02 2.86 16 35 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 36 H 0.15 2.36 6.30 -2.91 -0.02 2.34 16 37 H 0.06 0.83 7.65 -2.39 -0.02 0.81 16 38 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 0.81 7.67 -2.39 -0.02 0.79 16 40 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.06 2.07 6.12 -2.39 -0.01 2.05 16 42 H 0.07 1.97 7.54 -2.39 -0.02 1.95 16 Total: -1.00 -69.42 335.26 3.35 -66.07 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.93 Total: 18.58 kcal Atomic # 6 Polarization: -40.99 SS G_CDS: 5.34 Total: -35.65 kcal Atomic # 7 Polarization: -81.76 SS G_CDS: -3.93 Total: -85.69 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -0.88 Total: -9.56 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.89 Total: 46.26 kcal Total: -69.42 3.35 -66.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930541876.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.629 kcal (2) G-P(sol) polarization free energy of solvation -69.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds