Wall clock time and date at job start Mon Mar 30 2020 02:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46946 * 2 1 4 4 C 1.52996 * 109.46968 * 299.99579 * 3 2 1 5 5 C 1.52998 * 109.47589 * 59.99950 * 3 2 1 6 6 C 1.50704 * 109.47174 * 179.97438 * 3 2 1 7 7 C 1.37958 * 120.07411 * 1.30354 * 6 3 2 8 8 C 1.38361 * 120.14991 * 179.97438 * 7 6 3 9 9 C 1.38395 * 120.30205 * 0.02562 * 8 7 6 10 10 C 1.37909 * 120.15607 * 359.97438 * 9 8 7 11 11 C 1.39620 * 120.07696 * 181.02245 * 6 3 2 12 12 C 1.47722 * 120.15132 * 359.97438 * 11 6 3 13 13 O 1.21589 * 120.00237 * 273.73648 * 12 11 6 14 14 N 1.34780 * 119.99950 * 93.73755 * 12 11 6 15 15 C 1.46504 * 119.99744 * 5.26820 * 14 12 11 16 16 C 1.36870 * 120.00176 * 185.26735 * 14 12 11 17 17 H 1.07999 * 119.99690 * 2.76484 * 16 14 12 18 18 C 1.39050 * 120.00082 * 182.75922 * 16 14 12 19 19 N 1.31358 * 119.99827 * 5.48503 * 18 16 14 20 20 Si 1.86806 * 119.99906 * 185.48484 * 18 16 14 21 21 H 1.48503 * 109.46875 * 60.00154 * 20 18 16 22 22 H 1.48500 * 109.46960 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47023 * 299.99974 * 20 18 16 24 24 H 1.08999 * 109.46934 * 60.00625 * 1 2 3 25 25 H 1.09004 * 109.47068 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47363 * 300.00325 * 1 2 3 27 27 H 1.09000 * 109.47057 * 119.99916 * 2 1 3 28 28 H 1.09002 * 109.47363 * 239.99675 * 2 1 3 29 29 H 1.08997 * 109.47180 * 48.01081 * 4 3 2 30 30 H 1.08999 * 109.47338 * 168.00634 * 4 3 2 31 31 H 1.09001 * 109.47670 * 288.00907 * 4 3 2 32 32 H 1.09001 * 109.47299 * 69.91659 * 5 3 2 33 33 H 1.08995 * 109.47371 * 189.92493 * 5 3 2 34 34 H 1.09001 * 109.46605 * 309.92352 * 5 3 2 35 35 H 1.08002 * 119.92613 * 359.97438 * 7 6 3 36 36 H 1.07999 * 119.84276 * 179.97438 * 8 7 6 37 37 H 1.08004 * 119.92236 * 179.97438 * 9 8 7 38 38 H 1.07998 * 120.07922 * 180.02562 * 10 9 8 39 39 H 1.08996 * 109.47318 * 358.10360 * 15 14 12 40 40 H 1.09005 * 109.46876 * 118.10473 * 15 14 12 41 41 H 1.09004 * 109.47007 * 238.09946 * 15 14 12 42 42 H 0.97002 * 120.00020 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 -1.2493 5 6 1.5300 2.1638 1.2492 6 6 3.5470 1.4426 0.0006 7 6 4.2384 0.2490 -0.0261 8 6 5.6220 0.2473 -0.0260 9 6 6.3218 1.4409 0.0012 10 6 5.6434 2.6413 0.0281 11 6 4.2467 2.6506 0.0223 12 6 3.5131 3.9326 0.0441 13 8 3.1525 4.4446 -0.9981 14 7 3.2436 4.5349 1.2194 15 6 3.7766 3.9799 2.4660 16 6 2.4719 5.6650 1.2481 17 1 2.0421 6.0487 0.3347 18 6 2.2413 6.3189 2.4534 19 7 2.8497 5.9165 3.5458 20 14 1.0662 7.7696 2.5190 21 1 -0.2846 7.3324 2.0838 22 1 0.9956 8.2869 3.9092 23 1 1.5540 8.8429 1.6162 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 0.4612 1.9825 -1.3625 30 1 1.7083 3.2343 -1.1491 31 1 2.0571 1.7881 -2.1263 32 1 2.0306 1.7625 2.1303 33 1 1.7414 3.2298 1.1650 34 1 0.4545 2.0130 1.3421 35 1 3.6984 -0.6861 -0.0470 36 1 6.1582 -0.6900 -0.0466 37 1 7.4018 1.4324 0.0015 38 1 6.1907 3.5721 0.0489 39 1 4.3337 3.0686 2.2491 40 1 4.4391 4.7082 2.9339 41 1 2.9534 3.7502 3.1427 42 1 2.6886 6.3724 4.3867 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931241219.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:36 Heat of formation + Delta-G solvation = 6.433632 kcal Electronic energy + Delta-G solvation = -22871.414745 eV Core-core repulsion = 19817.219959 eV Total energy + Delta-G solvation = -3054.194785 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.20987 -37.68016 -36.46750 -34.77580 -31.82580 -30.85236 -30.45233 -28.81654 -26.66945 -26.27226 -24.91372 -24.10264 -22.19039 -22.05837 -19.19967 -18.39986 -17.07250 -16.55026 -15.79375 -15.18339 -14.77851 -14.40118 -14.19776 -14.05458 -13.63174 -13.52872 -13.20934 -13.12303 -12.60770 -12.24342 -11.90372 -11.78323 -11.65911 -11.47758 -11.30725 -11.03655 -10.92857 -10.80640 -10.74036 -10.60416 -10.43682 -10.23983 -10.22840 -10.04665 -9.65365 -9.03737 -8.59083 -8.40193 -8.11675 -7.81497 -6.27670 -3.84629 1.67700 1.78247 3.15058 3.21909 3.25790 3.80397 4.04057 4.15787 4.86273 4.96477 5.06017 5.13324 5.26683 5.31862 5.41880 5.50669 5.70655 5.79811 5.81731 5.85694 5.89004 6.02602 6.12458 6.26944 6.30067 6.34461 6.37949 6.40173 6.47356 6.55912 6.65778 6.68878 6.81972 6.88752 7.00779 7.12869 7.17186 7.27602 7.34699 7.41957 7.53473 8.01362 8.44370 9.13277 9.38702 9.92905 10.65135 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018258 B = 0.007265 C = 0.006043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.209590 B = 3853.321914 C = 4632.506221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.112 4.112 3 C -0.022 4.022 4 C -0.164 4.164 5 C -0.167 4.167 6 C -0.042 4.042 7 C -0.129 4.129 8 C -0.123 4.123 9 C -0.130 4.130 10 C -0.096 4.096 11 C -0.075 4.075 12 C 0.479 3.521 13 O -0.583 6.583 14 N -0.431 5.431 15 C 0.114 3.886 16 C -0.305 4.305 17 H 0.106 0.894 18 C 0.030 3.970 19 N -0.882 5.882 20 Si 0.930 3.070 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.273 1.273 24 H 0.058 0.942 25 H 0.047 0.953 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.101 0.899 31 H 0.043 0.957 32 H 0.047 0.953 33 H 0.101 0.899 34 H 0.052 0.948 35 H 0.124 0.876 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.024 0.976 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.209 -10.954 -1.801 11.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.149 4.149 3 C -0.022 4.022 4 C -0.220 4.220 5 C -0.224 4.224 6 C -0.043 4.043 7 C -0.146 4.146 8 C -0.141 4.141 9 C -0.148 4.148 10 C -0.115 4.115 11 C -0.079 4.079 12 C 0.268 3.732 13 O -0.470 6.470 14 N -0.148 5.148 15 C -0.029 4.029 16 C -0.432 4.432 17 H 0.123 0.877 18 C -0.172 4.172 19 N -0.523 5.523 20 Si 0.757 3.243 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.198 1.198 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.120 0.880 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.119 0.881 34 H 0.071 0.929 35 H 0.141 0.859 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.043 0.957 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.024 -10.603 -2.045 10.847 hybrid contribution -0.333 0.532 0.326 0.707 sum 0.691 -10.071 -1.719 10.240 Atomic orbital electron populations 1.21938 0.96055 1.00824 1.02505 1.21638 0.95859 0.96224 1.01217 1.19476 0.89922 0.95306 0.97486 1.22421 0.99451 1.04832 0.95305 1.22488 1.00123 1.04545 0.95274 1.19927 0.95227 0.91763 0.97382 1.21029 0.94047 0.97515 1.02050 1.21092 0.94196 0.97651 1.01141 1.20960 0.99427 0.92409 1.02049 1.21197 0.93095 0.98174 0.99030 1.20027 0.93760 0.94402 0.99682 1.17688 0.85483 0.85681 0.84372 1.90556 1.57826 1.66626 1.31992 1.43732 1.42841 1.23280 1.04942 1.21834 0.99296 0.95685 0.86110 1.19751 1.25330 1.02459 0.95703 0.87669 1.25322 0.97906 0.99065 0.94939 1.70142 1.41253 1.40996 0.99890 0.85931 0.80404 0.80779 0.77228 1.19792 1.20893 1.19815 0.92273 0.93396 0.92173 0.92130 0.92223 0.93142 0.88043 0.93735 0.93423 0.88057 0.92879 0.85866 0.86597 0.86377 0.86106 0.95744 0.90531 0.91762 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.26 37.16 0.34 -1.65 16 2 C -0.11 -1.56 3.65 -26.73 -0.10 -1.66 16 3 C -0.02 -0.38 0.52 -155.66 -0.08 -0.46 16 4 C -0.16 -3.09 7.95 37.16 0.30 -2.79 16 5 C -0.17 -3.19 7.06 37.16 0.26 -2.93 16 6 C -0.04 -0.77 4.73 -104.21 -0.49 -1.26 16 7 C -0.13 -1.97 8.97 -39.64 -0.36 -2.32 16 8 C -0.12 -1.72 10.04 -39.48 -0.40 -2.12 16 9 C -0.13 -1.95 10.03 -39.64 -0.40 -2.35 16 10 C -0.10 -1.75 9.36 -39.17 -0.37 -2.12 16 11 C -0.08 -1.55 3.52 -104.97 -0.37 -1.92 16 12 C 0.48 11.63 3.95 -12.38 -0.05 11.58 16 13 O -0.58 -15.87 14.15 5.29 0.07 -15.79 16 14 N -0.43 -10.78 1.60 -123.32 -0.20 -10.98 16 15 C 0.11 2.62 7.50 59.85 0.45 3.07 16 16 C -0.30 -8.20 9.10 -15.00 -0.14 -8.34 16 17 H 0.11 2.96 7.18 -52.49 -0.38 2.58 16 18 C 0.03 0.78 5.44 -17.45 -0.09 0.68 16 19 N -0.88 -22.59 9.48 55.50 0.53 -22.06 16 20 Si 0.93 20.37 29.56 -169.99 -5.02 15.35 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 24 H 0.06 0.76 6.19 -51.93 -0.32 0.44 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.79 6.22 -51.93 -0.32 0.47 16 27 H 0.06 0.80 7.58 -51.93 -0.39 0.41 16 28 H 0.06 0.78 7.46 -51.93 -0.39 0.39 16 29 H 0.05 0.85 5.88 -51.93 -0.31 0.54 16 30 H 0.10 2.32 4.19 -51.93 -0.22 2.10 16 31 H 0.04 0.82 8.09 -51.93 -0.42 0.40 16 32 H 0.05 0.88 7.99 -51.93 -0.41 0.47 16 33 H 0.10 2.30 3.53 -51.93 -0.18 2.12 16 34 H 0.05 0.93 5.96 -51.93 -0.31 0.62 16 35 H 0.12 1.59 5.89 -52.49 -0.31 1.28 16 36 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 37 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 38 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 39 H 0.02 0.51 5.89 -51.93 -0.31 0.20 16 40 H 0.08 1.87 6.82 -51.93 -0.35 1.52 16 41 H 0.06 1.53 7.18 -51.93 -0.37 1.16 16 42 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 LS Contribution 313.83 15.07 4.73 4.73 Total: -1.00 -28.43 313.83 -7.20 -35.63 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -5.82 Total: 7.73 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -1.49 Total: -14.59 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: 0.33 Total: -33.05 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.07 Total: -15.79 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.43 -7.20 -35.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931241219.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.062 kcal (2) G-P(sol) polarization free energy of solvation -28.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds