Wall clock time and date at job start Mon Mar 30 2020 02:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46946 * 2 1 4 4 C 1.52996 * 109.46968 * 299.99579 * 3 2 1 5 5 C 1.52998 * 109.47589 * 59.99950 * 3 2 1 6 6 C 1.50704 * 109.47174 * 179.97438 * 3 2 1 7 7 C 1.37958 * 120.07411 * 1.30354 * 6 3 2 8 8 C 1.38361 * 120.14991 * 179.97438 * 7 6 3 9 9 C 1.38395 * 120.30205 * 0.02562 * 8 7 6 10 10 C 1.37909 * 120.15607 * 359.97438 * 9 8 7 11 11 C 1.39620 * 120.07696 * 181.02245 * 6 3 2 12 12 C 1.47722 * 120.15132 * 359.97438 * 11 6 3 13 13 O 1.21589 * 120.00237 * 273.73648 * 12 11 6 14 14 N 1.34780 * 119.99950 * 93.73755 * 12 11 6 15 15 C 1.46504 * 119.99744 * 5.26820 * 14 12 11 16 16 C 1.36870 * 120.00176 * 185.26735 * 14 12 11 17 17 H 1.07999 * 119.99690 * 2.76484 * 16 14 12 18 18 C 1.39050 * 120.00082 * 182.75922 * 16 14 12 19 19 N 1.31358 * 119.99827 * 5.48503 * 18 16 14 20 20 Si 1.86806 * 119.99906 * 185.48484 * 18 16 14 21 21 H 1.48503 * 109.46875 * 60.00154 * 20 18 16 22 22 H 1.48500 * 109.46960 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47023 * 299.99974 * 20 18 16 24 24 H 1.08999 * 109.46934 * 60.00625 * 1 2 3 25 25 H 1.09004 * 109.47068 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47363 * 300.00325 * 1 2 3 27 27 H 1.09000 * 109.47057 * 119.99916 * 2 1 3 28 28 H 1.09002 * 109.47363 * 239.99675 * 2 1 3 29 29 H 1.08997 * 109.47180 * 48.01081 * 4 3 2 30 30 H 1.08999 * 109.47338 * 168.00634 * 4 3 2 31 31 H 1.09001 * 109.47670 * 288.00907 * 4 3 2 32 32 H 1.09001 * 109.47299 * 69.91659 * 5 3 2 33 33 H 1.08995 * 109.47371 * 189.92493 * 5 3 2 34 34 H 1.09001 * 109.46605 * 309.92352 * 5 3 2 35 35 H 1.08002 * 119.92613 * 359.97438 * 7 6 3 36 36 H 1.07999 * 119.84276 * 179.97438 * 8 7 6 37 37 H 1.08004 * 119.92236 * 179.97438 * 9 8 7 38 38 H 1.07998 * 120.07922 * 180.02562 * 10 9 8 39 39 H 1.08996 * 109.47318 * 358.10360 * 15 14 12 40 40 H 1.09005 * 109.46876 * 118.10473 * 15 14 12 41 41 H 1.09004 * 109.47007 * 238.09946 * 15 14 12 42 42 H 0.97002 * 120.00020 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 -1.2493 5 6 1.5300 2.1638 1.2492 6 6 3.5470 1.4426 0.0006 7 6 4.2384 0.2490 -0.0261 8 6 5.6220 0.2473 -0.0260 9 6 6.3218 1.4409 0.0012 10 6 5.6434 2.6413 0.0281 11 6 4.2467 2.6506 0.0223 12 6 3.5131 3.9326 0.0441 13 8 3.1525 4.4446 -0.9981 14 7 3.2436 4.5349 1.2194 15 6 3.7766 3.9799 2.4660 16 6 2.4719 5.6650 1.2481 17 1 2.0421 6.0487 0.3347 18 6 2.2413 6.3189 2.4534 19 7 2.8497 5.9165 3.5458 20 14 1.0662 7.7696 2.5190 21 1 -0.2846 7.3324 2.0838 22 1 0.9956 8.2869 3.9092 23 1 1.5540 8.8429 1.6162 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 0.4612 1.9825 -1.3625 30 1 1.7083 3.2343 -1.1491 31 1 2.0571 1.7881 -2.1263 32 1 2.0306 1.7625 2.1303 33 1 1.7414 3.2298 1.1650 34 1 0.4545 2.0130 1.3421 35 1 3.6984 -0.6861 -0.0470 36 1 6.1582 -0.6900 -0.0466 37 1 7.4018 1.4324 0.0015 38 1 6.1907 3.5721 0.0489 39 1 4.3337 3.0686 2.2491 40 1 4.4391 4.7082 2.9339 41 1 2.9534 3.7502 3.1427 42 1 2.6886 6.3724 4.3867 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931241219.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:35 Heat of formation + Delta-G solvation = -7.732800 kcal Electronic energy + Delta-G solvation = -22872.029047 eV Core-core repulsion = 19817.219959 eV Total energy + Delta-G solvation = -3054.809088 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.72669 -39.35568 -37.73516 -36.75210 -33.72123 -32.18861 -31.74534 -30.12662 -28.42525 -27.97209 -26.62802 -25.53313 -23.59577 -23.37730 -20.81261 -19.71983 -19.00817 -18.22576 -17.37974 -16.75126 -16.36610 -15.98958 -15.60221 -15.40451 -15.17167 -15.02434 -14.59768 -14.47634 -14.28260 -13.81780 -13.62251 -13.25827 -13.16204 -12.84190 -12.69218 -12.64305 -12.53041 -12.34626 -12.28197 -12.19940 -12.14859 -12.01380 -11.43164 -11.39206 -11.06702 -10.98362 -10.41205 -9.78288 -9.71850 -9.49705 -8.25346 -5.90323 0.36496 0.51458 1.36312 1.39168 1.49488 1.97323 2.24384 2.82194 3.10872 3.14166 3.67023 3.83397 4.01110 4.09761 4.17429 4.27411 4.37605 4.51342 4.54370 4.61600 4.62736 4.69238 4.81194 4.87855 4.97488 5.07632 5.08434 5.09547 5.14142 5.15935 5.27190 5.28811 5.42655 5.43324 5.45253 5.55537 5.61451 5.62948 5.68046 5.83064 6.01228 6.13256 6.46793 7.14542 7.45283 8.01039 8.65886 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018258 B = 0.007265 C = 0.006043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.209590 B = 3853.321914 C = 4632.506221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.105 4.105 3 C -0.021 4.021 4 C -0.158 4.158 5 C -0.162 4.162 6 C -0.058 4.058 7 C -0.123 4.123 8 C -0.106 4.106 9 C -0.122 4.122 10 C -0.116 4.116 11 C -0.112 4.112 12 C 0.483 3.517 13 O -0.625 6.625 14 N -0.442 5.442 15 C 0.137 3.863 16 C -0.339 4.339 17 H 0.078 0.922 18 C 0.000 4.000 19 N -0.894 5.894 20 Si 0.989 3.011 21 H -0.271 1.271 22 H -0.268 1.268 23 H -0.275 1.275 24 H 0.052 0.948 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.156 0.844 36 H 0.162 0.838 37 H 0.153 0.847 38 H 0.109 0.891 39 H 0.044 0.956 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.881 -14.145 -1.383 14.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.142 4.142 3 C -0.021 4.021 4 C -0.215 4.215 5 C -0.220 4.220 6 C -0.059 4.059 7 C -0.141 4.141 8 C -0.124 4.124 9 C -0.139 4.139 10 C -0.135 4.135 11 C -0.115 4.115 12 C 0.274 3.726 13 O -0.515 6.515 14 N -0.158 5.158 15 C -0.006 4.006 16 C -0.466 4.466 17 H 0.096 0.904 18 C -0.202 4.202 19 N -0.533 5.533 20 Si 0.812 3.188 21 H -0.197 1.197 22 H -0.192 1.192 23 H -0.200 1.200 24 H 0.071 0.929 25 H 0.092 0.908 26 H 0.069 0.931 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.173 0.827 36 H 0.180 0.820 37 H 0.171 0.829 38 H 0.128 0.872 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.712 -13.807 -1.606 14.005 hybrid contribution -0.486 1.473 0.146 1.558 sum 1.225 -12.334 -1.460 12.480 Atomic orbital electron populations 1.21928 0.95337 1.02276 1.01726 1.21605 0.96480 0.93416 1.02686 1.19472 0.90011 0.97307 0.95287 1.22287 1.00579 1.02147 0.96451 1.22371 1.00820 1.02319 0.96473 1.20091 0.95537 0.92034 0.98201 1.21411 0.94939 0.97300 1.00438 1.21636 0.93828 0.99007 0.97944 1.21335 1.01177 0.91299 1.00116 1.21278 0.92254 0.99565 1.00397 1.19843 0.94692 0.93158 1.03771 1.18355 0.84325 0.86598 0.83347 1.90507 1.59340 1.68221 1.33409 1.43821 1.43024 1.23137 1.05811 1.21548 0.98291 0.95703 0.85074 1.19658 1.27349 1.04189 0.95428 0.90406 1.26013 0.98888 1.01046 0.94233 1.70226 1.41420 1.41601 1.00099 0.85064 0.78332 0.77652 0.77728 1.19651 1.19242 1.20032 0.92933 0.90796 0.93101 0.90597 0.90569 0.91650 0.92515 0.93746 0.93314 0.91973 0.92027 0.82660 0.82017 0.82929 0.87240 0.93731 0.92388 0.93067 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 9.26 71.98 0.67 -2.91 16 2 C -0.10 -2.59 3.65 30.59 0.11 -2.48 16 3 C -0.02 -0.71 0.52 -52.93 -0.03 -0.74 16 4 C -0.16 -6.11 7.95 71.98 0.57 -5.54 16 5 C -0.16 -6.31 7.06 71.98 0.51 -5.80 16 6 C -0.06 -2.03 4.73 -19.60 -0.09 -2.13 16 7 C -0.12 -3.26 8.97 22.23 0.20 -3.06 16 8 C -0.11 -2.43 10.04 22.34 0.22 -2.21 16 9 C -0.12 -3.21 10.03 22.23 0.22 -2.98 16 10 C -0.12 -4.18 9.36 22.54 0.21 -3.97 16 11 C -0.11 -4.65 3.52 -20.09 -0.07 -4.72 16 12 C 0.48 24.87 3.95 86.75 0.34 25.21 16 13 O -0.63 -36.67 14.15 -4.00 -0.06 -36.73 16 14 N -0.44 -23.40 1.60 -662.32 -1.06 -24.46 16 15 C 0.14 6.55 7.50 127.77 0.96 7.51 16 16 C -0.34 -19.39 9.10 84.10 0.77 -18.63 16 17 H 0.08 4.77 7.18 -2.91 -0.02 4.75 16 18 C 0.00 -0.02 5.44 84.96 0.46 0.44 16 19 N -0.89 -46.88 9.48 21.68 0.21 -46.68 16 20 Si 0.99 42.84 29.56 68.60 2.03 44.87 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 22 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 H 0.05 1.26 6.19 -2.39 -0.01 1.25 16 25 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 26 H 0.05 1.25 6.22 -2.39 -0.01 1.24 16 27 H 0.08 1.67 7.58 -2.39 -0.02 1.66 16 28 H 0.08 1.66 7.46 -2.39 -0.02 1.64 16 29 H 0.06 2.23 5.88 -2.39 -0.01 2.22 16 30 H 0.06 2.76 4.19 -2.39 -0.01 2.75 16 31 H 0.04 1.65 8.09 -2.39 -0.02 1.63 16 32 H 0.05 1.81 7.99 -2.39 -0.02 1.79 16 33 H 0.06 2.97 3.53 -2.39 -0.01 2.96 16 34 H 0.06 2.19 5.96 -2.39 -0.01 2.18 16 35 H 0.16 3.10 5.89 -2.91 -0.02 3.08 16 36 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 37 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 38 H 0.11 4.04 8.06 -2.91 -0.02 4.01 16 39 H 0.04 1.91 5.89 -2.39 -0.01 1.89 16 40 H 0.06 2.94 6.82 -2.38 -0.02 2.93 16 41 H 0.05 2.53 7.18 -2.38 -0.02 2.51 16 42 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 Total: -1.00 -66.86 313.83 7.19 -59.67 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 1.02 Total: 25.34 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: 5.05 Total: -22.01 kcal Atomic # 7 Polarization: -70.29 SS G_CDS: -0.86 Total: -71.14 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -0.06 Total: -36.73 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -66.86 7.19 -59.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931241219.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.936 kcal (2) G-P(sol) polarization free energy of solvation -66.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds