Wall clock time and date at job start Mon Mar 30 2020 01:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 110.07000 * 2 1 4 4 C 1.38239 * 120.00369 * 238.52677 * 3 2 1 5 5 C 1.38231 * 119.99922 * 179.76509 * 4 3 2 6 6 C 1.38230 * 120.00142 * 0.49746 * 5 4 3 7 7 C 1.38230 * 120.00128 * 359.75536 * 6 5 4 8 8 C 1.38236 * 120.00174 * 359.97438 * 7 6 5 9 9 C 1.53996 * 109.91825 * 121.20656 * 2 1 3 10 10 C 1.54591 * 105.13813 * 118.12732 * 9 2 1 11 11 C 1.54938 * 102.92564 * 338.04270 * 10 9 2 12 12 N 1.47904 * 109.91668 * 238.79747 * 2 1 3 13 13 C 1.46899 * 111.00129 * 26.48747 * 12 2 1 14 14 C 1.53001 * 109.47200 * 177.60382 * 13 12 2 15 15 H 1.09004 * 109.46470 * 55.83894 * 14 13 12 16 16 O 1.42896 * 109.47294 * 295.83844 * 14 13 12 17 17 C 1.50700 * 109.46871 * 175.83524 * 14 13 12 18 18 H 1.07995 * 120.00303 * 0.02562 * 17 14 13 19 19 C 1.37885 * 119.99485 * 180.02562 * 17 14 13 20 20 N 1.31518 * 119.99515 * 179.97438 * 19 17 14 21 21 Si 1.86796 * 120.00200 * 0.02562 * 19 17 14 22 22 H 1.48498 * 109.47087 * 89.99626 * 21 19 17 23 23 H 1.48503 * 109.46980 * 209.99605 * 21 19 17 24 24 H 1.48501 * 109.46997 * 329.99545 * 21 19 17 25 25 H 1.08997 * 109.47259 * 176.39354 * 1 2 3 26 26 H 1.08994 * 109.46797 * 296.39577 * 1 2 3 27 27 H 1.09000 * 109.46753 * 56.39066 * 1 2 3 28 28 H 1.08002 * 119.99341 * 359.97438 * 4 3 2 29 29 H 1.08004 * 119.99541 * 180.23295 * 5 4 3 30 30 H 1.08007 * 120.00308 * 179.72516 * 6 5 4 31 31 H 1.08005 * 120.00392 * 179.97438 * 7 6 5 32 32 H 1.07995 * 120.00368 * 179.97438 * 8 7 6 33 33 H 1.09000 * 110.30564 * 359.21061 * 9 2 1 34 34 H 1.09004 * 110.30571 * 237.04161 * 9 2 1 35 35 H 1.09008 * 110.72365 * 219.68470 * 10 9 2 36 36 H 1.09002 * 110.88119 * 96.47508 * 10 9 2 37 37 H 1.08999 * 110.66241 * 278.98181 * 11 10 9 38 38 H 1.09003 * 110.81009 * 155.91712 * 11 10 9 39 39 H 1.09001 * 109.46881 * 57.60821 * 13 12 2 40 40 H 1.08994 * 109.47106 * 297.60909 * 13 12 2 41 41 H 0.96693 * 114.00239 * 299.99463 * 16 14 13 42 42 H 0.97003 * 119.99791 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0472 1.4155 0.0000 4 6 2.8715 1.8503 -1.0210 5 6 3.3418 3.1501 -1.0235 6 6 2.9963 4.0121 0.0004 7 6 2.1763 3.5759 1.0241 8 6 1.7014 2.2777 1.0237 9 6 2.0546 -0.7502 1.2383 10 6 2.8536 -1.9483 0.6761 11 6 2.2661 -2.1193 -0.7473 12 7 2.0339 -0.7204 -1.1894 13 6 1.0592 -0.6703 -2.2873 14 6 1.6390 -1.3728 -3.5166 15 1 1.9259 -2.3905 -3.2518 16 8 2.7881 -0.6582 -3.9759 17 6 0.6017 -1.4114 -4.6090 18 1 -0.3735 -0.9779 -4.4433 19 6 0.8976 -2.0003 -5.8202 20 7 -0.0079 -2.0345 -6.7734 21 14 2.5841 -2.7508 -6.1066 22 1 2.5663 -4.1784 -5.6984 23 1 2.9317 -2.6520 -7.5469 24 1 3.5948 -2.0184 -5.3020 25 1 -0.3633 -1.0256 -0.0646 26 1 -0.3633 0.4569 0.9205 27 1 -0.3633 0.5689 -0.8559 28 1 3.1451 1.1753 -1.8185 29 1 3.9828 3.4908 -1.8232 30 1 3.3675 5.0264 0.0008 31 1 1.9067 4.2492 1.8243 32 1 1.0610 1.9367 1.8238 33 1 1.2225 -1.1028 1.8477 34 1 2.7064 -0.1026 1.8249 35 1 2.6804 -2.8425 1.2749 36 1 3.9179 -1.7177 0.6289 37 1 1.3275 -2.6725 -0.7121 38 1 2.9800 -2.6168 -1.4037 39 1 0.8409 0.3692 -2.5322 40 1 0.1412 -1.1720 -1.9814 41 1 2.6066 0.2571 -4.2295 42 1 0.2004 -2.4484 -7.6256 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931693722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:30 Heat of formation + Delta-G solvation = -13.731175 kcal Electronic energy + Delta-G solvation = -22273.145784 eV Core-core repulsion = 19218.076587 eV Total energy + Delta-G solvation = -3055.069197 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.25895 -38.06916 -35.92792 -32.32843 -32.21185 -31.95044 -30.60802 -29.08063 -27.98250 -25.60042 -24.58348 -22.46146 -22.34843 -21.24210 -19.86228 -18.85548 -17.32157 -16.76984 -15.53167 -15.24257 -14.87304 -14.76537 -14.51721 -14.31585 -14.10712 -13.38405 -13.20821 -13.03658 -12.99453 -12.56091 -12.55031 -12.13478 -12.05900 -11.73203 -11.46072 -11.23877 -10.95158 -10.86185 -10.84676 -10.62188 -10.53374 -10.35494 -10.28828 -9.82326 -8.99707 -8.68534 -8.60406 -8.46714 -8.22488 -7.87296 -6.11574 -4.22585 1.55523 1.65437 3.40067 3.49928 3.77575 3.99772 4.24462 4.55418 4.74033 4.85135 5.03885 5.11153 5.14526 5.17903 5.24098 5.36668 5.43178 5.57506 5.63203 5.72432 5.80413 5.85039 5.86607 5.92819 5.97231 6.03651 6.07727 6.18536 6.20675 6.30226 6.34001 6.37692 6.40689 6.65467 6.67157 6.80968 6.90301 7.23161 7.28561 7.41427 7.50264 7.71460 8.30969 8.85361 9.11391 9.53697 10.99146 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020763 B = 0.005762 C = 0.005208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.219004 B = 4858.126356 C = 5374.768364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.126 3.874 3 C -0.058 4.058 4 C -0.089 4.089 5 C -0.126 4.126 6 C -0.130 4.130 7 C -0.130 4.130 8 C -0.121 4.121 9 C -0.117 4.117 10 C -0.122 4.122 11 C 0.037 3.963 12 N -0.497 5.497 13 C 0.030 3.970 14 C 0.202 3.798 15 H 0.052 0.948 16 O -0.572 6.572 17 C -0.565 4.565 18 H 0.070 0.930 19 C 0.084 3.916 20 N -0.894 5.894 21 Si 0.870 3.130 22 H -0.289 1.289 23 H -0.297 1.297 24 H -0.215 1.215 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.147 0.853 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.043 0.957 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.040 0.960 41 H 0.353 0.647 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.879 6.688 16.966 18.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 C -0.058 4.058 4 C -0.107 4.107 5 C -0.144 4.144 6 C -0.148 4.148 7 C -0.148 4.148 8 C -0.140 4.140 9 C -0.155 4.155 10 C -0.160 4.160 11 C -0.091 4.091 12 N -0.220 5.220 13 C -0.097 4.097 14 C 0.144 3.856 15 H 0.070 0.930 16 O -0.377 6.377 17 C -0.603 4.603 18 H 0.088 0.912 19 C -0.120 4.120 20 N -0.531 5.531 21 Si 0.697 3.303 22 H -0.216 1.216 23 H -0.223 1.223 24 H -0.137 1.137 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.164 0.836 29 H 0.136 0.864 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.058 0.942 41 H 0.199 0.801 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.604 6.299 16.715 18.721 hybrid contribution -0.610 -0.250 -0.189 0.686 sum 4.994 6.049 16.526 18.293 Atomic orbital electron populations 1.22415 0.95337 1.02140 1.02309 1.20603 0.92825 0.91387 0.91562 1.19716 0.97153 0.94259 0.94714 1.21428 0.95223 0.95329 0.98732 1.21239 1.00463 0.94225 0.98499 1.21081 0.99186 0.99402 0.95159 1.20975 0.99060 0.95875 0.98885 1.20901 1.00683 0.93779 0.98609 1.22513 0.99627 0.97025 0.96296 1.22469 1.00231 0.97372 0.95977 1.23183 0.99848 0.90777 0.95270 1.64789 1.42559 1.10003 1.04659 1.23052 0.93133 1.01365 0.92181 1.19718 0.84724 0.91352 0.89793 0.93044 1.86662 1.37152 1.27215 1.86649 1.21520 1.00386 1.40332 0.98022 0.91188 1.24982 0.97376 0.94175 0.95498 1.69965 1.34654 1.43580 1.04945 0.87039 0.86816 0.79079 0.77406 1.21568 1.22340 1.13688 0.92185 0.92530 0.91564 0.83566 0.86395 0.86828 0.86767 0.86793 0.91511 0.91159 0.91515 0.90955 0.93891 0.89763 0.91282 0.94170 0.80138 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 6.73 37.16 0.25 -1.99 16 2 C 0.13 1.78 0.70 -131.68 -0.09 1.69 16 3 C -0.06 -0.82 4.62 -104.62 -0.48 -1.30 16 4 C -0.09 -1.34 9.33 -39.58 -0.37 -1.71 16 5 C -0.13 -1.68 10.05 -39.59 -0.40 -2.08 16 6 C -0.13 -1.56 10.05 -39.59 -0.40 -1.96 16 7 C -0.13 -1.52 10.05 -39.58 -0.40 -1.92 16 8 C -0.12 -1.52 8.72 -39.58 -0.35 -1.86 16 9 C -0.12 -1.41 6.00 -25.38 -0.15 -1.56 16 10 C -0.12 -1.52 7.06 -24.87 -0.18 -1.70 16 11 C 0.04 0.57 5.61 -1.90 -0.01 0.56 16 12 N -0.50 -8.17 3.29 -216.31 -0.71 -8.89 16 13 C 0.03 0.58 3.10 -3.82 -0.01 0.57 16 14 C 0.20 4.61 2.28 -27.88 -0.06 4.55 16 15 H 0.05 1.22 6.30 -51.93 -0.33 0.90 16 16 O -0.57 -12.80 10.08 -35.23 -0.36 -13.15 16 17 C -0.56 -15.51 9.34 -34.44 -0.32 -15.83 16 18 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16 19 C 0.08 2.41 5.47 -17.82 -0.10 2.31 16 20 N -0.89 -27.29 13.96 55.43 0.77 -26.52 16 21 Si 0.87 21.83 26.99 -169.99 -4.59 17.24 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 24 H -0.21 -5.26 5.31 56.52 0.30 -4.96 16 25 H 0.06 0.83 7.47 -51.93 -0.39 0.45 16 26 H 0.06 0.66 7.51 -51.93 -0.39 0.27 16 27 H 0.07 1.00 6.81 -51.93 -0.35 0.65 16 28 H 0.15 2.44 6.84 -52.49 -0.36 2.08 16 29 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 30 H 0.11 1.10 8.06 -52.48 -0.42 0.68 16 31 H 0.11 1.06 8.06 -52.48 -0.42 0.64 16 32 H 0.11 1.23 7.59 -52.49 -0.40 0.83 16 33 H 0.07 0.72 7.68 -51.93 -0.40 0.32 16 34 H 0.07 0.83 7.43 -51.93 -0.39 0.44 16 35 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.04 0.67 7.93 -51.93 -0.41 0.25 16 38 H 0.08 1.39 7.58 -51.93 -0.39 1.00 16 39 H 0.07 1.36 7.64 -51.93 -0.40 0.96 16 40 H 0.04 0.79 6.34 -51.93 -0.33 0.46 16 41 H 0.35 7.16 9.04 45.56 0.41 7.57 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 325.85 15.07 4.91 4.91 Total: -1.00 -30.48 325.85 -8.93 -39.41 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -5.89 Total: 9.24 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -3.07 Total: -22.23 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.06 Total: -35.41 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -0.36 Total: -13.15 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.59 Total: 17.24 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.48 -8.93 -39.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931693722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.676 kcal (2) G-P(sol) polarization free energy of solvation -30.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds