Wall clock time and date at job start Mon Mar 30 2020 01:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 110.07000 * 2 1 4 4 C 1.38239 * 120.00369 * 238.52677 * 3 2 1 5 5 C 1.38231 * 119.99922 * 179.76509 * 4 3 2 6 6 C 1.38230 * 120.00142 * 0.49746 * 5 4 3 7 7 C 1.38230 * 120.00128 * 359.75536 * 6 5 4 8 8 C 1.38236 * 120.00174 * 359.97438 * 7 6 5 9 9 C 1.53996 * 109.91825 * 121.20656 * 2 1 3 10 10 C 1.54591 * 105.13813 * 118.12732 * 9 2 1 11 11 C 1.54938 * 102.92564 * 338.04270 * 10 9 2 12 12 N 1.47904 * 109.91668 * 238.79747 * 2 1 3 13 13 C 1.46899 * 111.00129 * 26.48747 * 12 2 1 14 14 C 1.53001 * 109.47200 * 177.60382 * 13 12 2 15 15 H 1.09004 * 109.46470 * 55.83894 * 14 13 12 16 16 O 1.42896 * 109.47294 * 295.83844 * 14 13 12 17 17 C 1.50700 * 109.46871 * 175.83524 * 14 13 12 18 18 H 1.07995 * 120.00303 * 0.02562 * 17 14 13 19 19 C 1.37885 * 119.99485 * 180.02562 * 17 14 13 20 20 N 1.31518 * 119.99515 * 179.97438 * 19 17 14 21 21 Si 1.86796 * 120.00200 * 0.02562 * 19 17 14 22 22 H 1.48498 * 109.47087 * 89.99626 * 21 19 17 23 23 H 1.48503 * 109.46980 * 209.99605 * 21 19 17 24 24 H 1.48501 * 109.46997 * 329.99545 * 21 19 17 25 25 H 1.08997 * 109.47259 * 176.39354 * 1 2 3 26 26 H 1.08994 * 109.46797 * 296.39577 * 1 2 3 27 27 H 1.09000 * 109.46753 * 56.39066 * 1 2 3 28 28 H 1.08002 * 119.99341 * 359.97438 * 4 3 2 29 29 H 1.08004 * 119.99541 * 180.23295 * 5 4 3 30 30 H 1.08007 * 120.00308 * 179.72516 * 6 5 4 31 31 H 1.08005 * 120.00392 * 179.97438 * 7 6 5 32 32 H 1.07995 * 120.00368 * 179.97438 * 8 7 6 33 33 H 1.09000 * 110.30564 * 359.21061 * 9 2 1 34 34 H 1.09004 * 110.30571 * 237.04161 * 9 2 1 35 35 H 1.09008 * 110.72365 * 219.68470 * 10 9 2 36 36 H 1.09002 * 110.88119 * 96.47508 * 10 9 2 37 37 H 1.08999 * 110.66241 * 278.98181 * 11 10 9 38 38 H 1.09003 * 110.81009 * 155.91712 * 11 10 9 39 39 H 1.09001 * 109.46881 * 57.60821 * 13 12 2 40 40 H 1.08994 * 109.47106 * 297.60909 * 13 12 2 41 41 H 0.96693 * 114.00239 * 299.99463 * 16 14 13 42 42 H 0.97003 * 119.99791 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0472 1.4155 0.0000 4 6 2.8715 1.8503 -1.0210 5 6 3.3418 3.1501 -1.0235 6 6 2.9963 4.0121 0.0004 7 6 2.1763 3.5759 1.0241 8 6 1.7014 2.2777 1.0237 9 6 2.0546 -0.7502 1.2383 10 6 2.8536 -1.9483 0.6761 11 6 2.2661 -2.1193 -0.7473 12 7 2.0339 -0.7204 -1.1894 13 6 1.0592 -0.6703 -2.2873 14 6 1.6390 -1.3728 -3.5166 15 1 1.9259 -2.3905 -3.2518 16 8 2.7881 -0.6582 -3.9759 17 6 0.6017 -1.4114 -4.6090 18 1 -0.3735 -0.9779 -4.4433 19 6 0.8976 -2.0003 -5.8202 20 7 -0.0079 -2.0345 -6.7734 21 14 2.5841 -2.7508 -6.1066 22 1 2.5663 -4.1784 -5.6984 23 1 2.9317 -2.6520 -7.5469 24 1 3.5948 -2.0184 -5.3020 25 1 -0.3633 -1.0256 -0.0646 26 1 -0.3633 0.4569 0.9205 27 1 -0.3633 0.5689 -0.8559 28 1 3.1451 1.1753 -1.8185 29 1 3.9828 3.4908 -1.8232 30 1 3.3675 5.0264 0.0008 31 1 1.9067 4.2492 1.8243 32 1 1.0610 1.9367 1.8238 33 1 1.2225 -1.1028 1.8477 34 1 2.7064 -0.1026 1.8249 35 1 2.6804 -2.8425 1.2749 36 1 3.9179 -1.7177 0.6289 37 1 1.3275 -2.6725 -0.7121 38 1 2.9800 -2.6168 -1.4037 39 1 0.8409 0.3692 -2.5322 40 1 0.1412 -1.1720 -1.9814 41 1 2.6066 0.2571 -4.2295 42 1 0.2004 -2.4484 -7.6256 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931693722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:30 Heat of formation + Delta-G solvation = -33.083317 kcal Electronic energy + Delta-G solvation = -22273.984956 eV Core-core repulsion = 19218.076587 eV Total energy + Delta-G solvation = -3055.908369 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.39314 -39.16980 -37.68740 -34.41589 -33.46205 -33.22329 -31.60812 -30.14390 -29.76735 -26.70579 -26.32751 -23.63976 -23.39111 -22.59872 -21.24375 -20.13279 -19.18499 -17.92494 -16.86377 -16.75236 -16.41206 -16.10347 -16.01110 -15.67086 -15.33815 -14.94212 -14.52141 -14.20798 -14.14464 -14.05260 -13.81084 -13.53712 -13.29276 -13.13459 -12.89896 -12.77463 -12.37658 -12.24586 -12.16636 -12.00521 -11.82551 -11.61109 -11.53198 -11.34202 -11.01688 -10.81119 -10.10892 -9.66436 -9.45531 -9.20816 -8.36246 -6.50522 0.58364 0.66868 1.38169 1.43986 1.75049 2.43331 2.99218 3.01535 3.03376 3.68040 3.73215 3.97384 4.08989 4.11290 4.21529 4.29866 4.32467 4.38556 4.45785 4.51302 4.55654 4.59069 4.70729 4.78582 4.87661 4.92940 4.96386 5.03945 5.04937 5.14373 5.22162 5.25911 5.33345 5.39130 5.45006 5.49512 5.70578 5.79248 5.84969 6.06879 6.14984 6.22956 6.31672 6.62122 7.21032 7.35905 8.78123 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020763 B = 0.005762 C = 0.005208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.219004 B = 4858.126356 C = 5374.768364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.124 3.876 3 C -0.071 4.071 4 C -0.115 4.115 5 C -0.137 4.137 6 C -0.132 4.132 7 C -0.128 4.128 8 C -0.124 4.124 9 C -0.110 4.110 10 C -0.113 4.113 11 C 0.029 3.971 12 N -0.503 5.503 13 C 0.052 3.948 14 C 0.211 3.789 15 H 0.048 0.952 16 O -0.572 6.572 17 C -0.565 4.565 18 H 0.034 0.966 19 C 0.030 3.970 20 N -0.940 5.940 21 Si 0.937 3.063 22 H -0.285 1.285 23 H -0.298 1.298 24 H -0.205 1.205 25 H 0.054 0.946 26 H 0.081 0.919 27 H 0.043 0.957 28 H 0.121 0.879 29 H 0.126 0.874 30 H 0.138 0.862 31 H 0.144 0.856 32 H 0.135 0.865 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.040 0.960 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.031 0.969 41 H 0.363 0.637 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.105 7.404 19.705 21.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.035 3.965 3 C -0.072 4.072 4 C -0.133 4.133 5 C -0.155 4.155 6 C -0.150 4.150 7 C -0.146 4.146 8 C -0.142 4.142 9 C -0.148 4.148 10 C -0.151 4.151 11 C -0.099 4.099 12 N -0.226 5.226 13 C -0.076 4.076 14 C 0.153 3.847 15 H 0.065 0.935 16 O -0.378 6.378 17 C -0.603 4.603 18 H 0.052 0.948 19 C -0.169 4.169 20 N -0.579 5.579 21 Si 0.762 3.238 22 H -0.212 1.212 23 H -0.225 1.225 24 H -0.127 1.127 25 H 0.073 0.927 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.139 0.861 29 H 0.144 0.856 30 H 0.156 0.844 31 H 0.161 0.839 32 H 0.153 0.847 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.049 0.951 41 H 0.210 0.790 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.834 7.025 19.474 21.801 hybrid contribution -1.046 -0.381 -1.014 1.506 sum 5.788 6.644 18.460 20.455 Atomic orbital electron populations 1.22371 0.95135 1.01661 1.02634 1.20714 0.92995 0.91598 0.91243 1.19797 0.97544 0.94558 0.95297 1.21333 0.97015 0.95989 0.98946 1.21407 1.00751 0.93906 0.99460 1.21404 0.98793 1.00280 0.94543 1.21368 0.97986 0.95963 0.99276 1.21139 1.00682 0.93901 0.98458 1.22511 1.00309 0.96598 0.95396 1.22434 0.99947 0.98666 0.94045 1.23247 0.99554 0.89970 0.97087 1.64706 1.41615 1.11037 1.05249 1.22600 0.93073 0.99874 0.92048 1.19495 0.83611 0.91811 0.89811 0.93475 1.86591 1.36492 1.27973 1.86771 1.21847 1.00072 1.39056 0.99372 0.94814 1.25825 1.00923 0.94813 0.95359 1.70088 1.36806 1.45365 1.05687 0.86005 0.82491 0.78275 0.77069 1.21174 1.22459 1.12683 0.92704 0.89970 0.93785 0.86060 0.85649 0.84373 0.83853 0.84735 0.89587 0.90268 0.89113 0.91094 0.94209 0.91326 0.92334 0.95092 0.79041 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.18 6.73 71.98 0.48 -3.70 16 2 C 0.12 3.33 0.70 2.92 0.00 3.33 16 3 C -0.07 -1.93 4.62 -19.86 -0.09 -2.02 16 4 C -0.11 -3.42 9.33 22.27 0.21 -3.21 16 5 C -0.14 -3.51 10.05 22.27 0.22 -3.29 16 6 C -0.13 -2.83 10.05 22.27 0.22 -2.60 16 7 C -0.13 -2.56 10.05 22.27 0.22 -2.34 16 8 C -0.12 -2.73 8.72 22.27 0.19 -2.53 16 9 C -0.11 -2.35 6.00 31.47 0.19 -2.16 16 10 C -0.11 -2.54 7.06 31.80 0.22 -2.32 16 11 C 0.03 0.88 5.61 86.65 0.49 1.36 16 12 N -0.50 -16.45 3.29 -838.28 -2.76 -19.21 16 13 C 0.05 2.06 3.10 86.30 0.27 2.33 16 14 C 0.21 9.78 2.28 29.85 0.07 9.85 16 15 H 0.05 2.25 6.30 -2.38 -0.02 2.24 16 16 O -0.57 -25.58 10.08 -148.98 -1.50 -27.09 16 17 C -0.57 -32.04 9.34 25.60 0.24 -31.80 16 18 H 0.03 2.11 7.99 -2.91 -0.02 2.08 16 19 C 0.03 1.78 5.47 84.66 0.46 2.24 16 20 N -0.94 -58.97 13.96 21.45 0.30 -58.67 16 21 Si 0.94 45.79 26.99 68.60 1.85 47.65 16 22 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 23 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 24 H -0.20 -9.61 5.31 99.48 0.53 -9.08 16 25 H 0.05 1.47 7.47 -2.39 -0.02 1.45 16 26 H 0.08 1.70 7.51 -2.39 -0.02 1.68 16 27 H 0.04 1.33 6.81 -2.39 -0.02 1.31 16 28 H 0.12 4.16 6.84 -2.91 -0.02 4.14 16 29 H 0.13 2.87 8.06 -2.91 -0.02 2.84 16 30 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 31 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 32 H 0.13 2.36 7.59 -2.91 -0.02 2.34 16 33 H 0.09 1.53 7.68 -2.39 -0.02 1.51 16 34 H 0.08 1.59 7.43 -2.38 -0.02 1.57 16 35 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.04 1.21 7.93 -2.39 -0.02 1.19 16 38 H 0.07 2.25 7.58 -2.39 -0.02 2.23 16 39 H 0.06 2.39 7.64 -2.39 -0.02 2.38 16 40 H 0.03 1.26 6.34 -2.39 -0.02 1.24 16 41 H 0.36 14.84 9.04 -74.06 -0.67 14.17 16 42 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -66.79 325.85 1.45 -65.34 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: 0.15 Total: 28.83 kcal Atomic # 6 Polarization: -40.27 SS G_CDS: 3.40 Total: -36.86 kcal Atomic # 7 Polarization: -75.42 SS G_CDS: -2.46 Total: -77.88 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -1.50 Total: -27.09 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.85 Total: 47.65 kcal Total: -66.79 1.45 -65.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931693722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.260 kcal (2) G-P(sol) polarization free energy of solvation -66.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds