Wall clock time and date at job start Mon Mar 30 2020 01:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50706 * 109.90333 * 2 1 4 4 C 1.38238 * 119.99775 * 300.69905 * 3 2 1 5 5 C 1.38235 * 119.99712 * 179.97438 * 4 3 2 6 6 C 1.38234 * 120.00220 * 359.97124 * 5 4 3 7 7 C 1.38233 * 120.00037 * 0.28719 * 6 5 4 8 8 C 1.38233 * 120.00212 * 120.71950 * 3 2 1 9 9 C 1.53985 * 109.92040 * 238.89759 * 2 1 3 10 10 C 1.54602 * 105.13826 * 241.67253 * 9 2 1 11 11 C 1.54929 * 102.91942 * 21.95643 * 10 9 2 12 12 N 1.47896 * 109.91750 * 121.09891 * 2 1 3 13 13 C 1.46906 * 110.99981 * 333.70944 * 12 2 1 14 14 C 1.53002 * 109.47118 * 170.00318 * 13 12 2 15 15 H 1.08994 * 109.47582 * 59.99620 * 14 13 12 16 16 O 1.42907 * 109.46721 * 299.99692 * 14 13 12 17 17 C 1.50695 * 109.47272 * 180.02562 * 14 13 12 18 18 H 1.08000 * 119.99803 * 359.97438 * 17 14 13 19 19 C 1.37872 * 120.00447 * 179.97438 * 17 14 13 20 20 N 1.31510 * 120.00322 * 179.97438 * 19 17 14 21 21 Si 1.86806 * 119.99855 * 359.97438 * 19 17 14 22 22 H 1.48497 * 109.47005 * 89.99740 * 21 19 17 23 23 H 1.48500 * 109.47388 * 210.00015 * 21 19 17 24 24 H 1.48505 * 109.47015 * 330.00048 * 21 19 17 25 25 H 1.09004 * 109.47173 * 59.30344 * 1 2 3 26 26 H 1.09005 * 109.46797 * 179.30032 * 1 2 3 27 27 H 1.08996 * 109.47933 * 299.29905 * 1 2 3 28 28 H 1.08005 * 120.00068 * 359.97438 * 4 3 2 29 29 H 1.07999 * 119.99770 * 179.97438 * 5 4 3 30 30 H 1.08002 * 119.99744 * 180.02562 * 6 5 4 31 31 H 1.07998 * 120.00395 * 179.72811 * 7 6 5 32 32 H 1.07999 * 119.99956 * 0.02562 * 8 3 2 33 33 H 1.09004 * 110.30865 * 0.58336 * 9 2 1 34 34 H 1.09001 * 110.31224 * 122.75933 * 9 2 1 35 35 H 1.08998 * 110.72284 * 140.31270 * 10 9 2 36 36 H 1.08995 * 110.72282 * 263.59280 * 10 9 2 37 37 H 1.09001 * 110.66929 * 81.02028 * 11 10 9 38 38 H 1.09004 * 110.66573 * 203.98439 * 11 10 9 39 39 H 1.09002 * 109.46982 * 289.99866 * 13 12 2 40 40 H 1.09000 * 109.47202 * 50.00164 * 13 12 2 41 41 H 0.96694 * 114.00247 * 300.00045 * 16 14 13 42 42 H 0.97002 * 119.99969 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0430 1.4170 0.0000 4 6 1.7036 2.2750 -1.0294 5 6 2.1738 3.5749 -1.0291 6 6 2.9828 4.0171 0.0008 7 6 3.3266 3.1576 1.0274 8 6 2.8533 1.8588 1.0291 9 6 2.0546 -0.7478 -1.2396 10 6 2.8579 -1.9441 -0.6794 11 6 2.2732 -2.1175 0.7448 12 7 2.0338 -0.7182 1.1907 13 6 1.0571 -0.6701 2.2869 14 6 1.4947 -1.6220 3.4020 15 1 2.4736 -1.3201 3.7741 16 8 1.5698 -2.9537 2.8892 17 6 0.4924 -1.5731 4.5263 18 1 -0.3701 -0.9273 4.4531 19 6 0.6766 -2.3527 5.6485 20 7 -0.1978 -2.3096 6.6298 21 14 2.1682 -3.4702 5.7749 22 1 3.2887 -2.7302 6.4090 23 1 1.8289 -4.6572 6.6001 24 1 2.5727 -3.9114 4.4158 25 1 -0.3634 0.5246 -0.8837 26 1 -0.3633 -1.0277 -0.0126 27 1 -0.3635 0.5029 0.8961 28 1 1.0711 1.9296 -1.8339 29 1 1.9090 4.2451 -1.8336 30 1 3.3498 5.0329 0.0012 31 1 3.9623 3.5017 1.8298 32 1 3.1191 1.1883 1.8330 33 1 1.2224 -1.1026 -1.8478 34 1 2.7036 -0.0982 -1.8269 35 1 2.6862 -2.8384 -1.2784 36 1 3.9209 -1.7074 -0.6339 37 1 1.3361 -2.6733 0.7109 38 1 2.9907 -2.6151 1.3972 39 1 0.9997 0.3457 2.6781 40 1 0.0780 -0.9720 1.9148 41 1 0.7326 -3.2887 2.5403 42 1 -0.0684 -2.8584 7.4192 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931693982.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:34 Heat of formation + Delta-G solvation = -7.414116 kcal Electronic energy + Delta-G solvation = -22286.436439 eV Core-core repulsion = 19231.641170 eV Total energy + Delta-G solvation = -3054.795269 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.26958 -38.15237 -35.99817 -32.38808 -32.10470 -31.91141 -30.60111 -29.04881 -28.15884 -25.50320 -24.53511 -22.43431 -22.31824 -21.07602 -20.04356 -18.87111 -17.38435 -16.71284 -15.48628 -15.19074 -14.87716 -14.83323 -14.65095 -14.39385 -13.91150 -13.42467 -13.19268 -13.07788 -12.95305 -12.73915 -12.43355 -12.11273 -11.91940 -11.73713 -11.52361 -11.24706 -11.01415 -10.89012 -10.62036 -10.56452 -10.44682 -10.29872 -10.24214 -9.87150 -9.01392 -8.71006 -8.61548 -8.47589 -8.15265 -7.87401 -6.12851 -4.24023 1.54071 1.62957 3.39958 3.49142 3.74284 3.97999 4.32088 4.53518 4.78042 4.92762 5.08465 5.10964 5.16139 5.19724 5.20701 5.36553 5.50750 5.61741 5.65499 5.74482 5.75353 5.84484 5.91618 6.01990 6.03151 6.10251 6.13343 6.15174 6.25757 6.29139 6.37710 6.48059 6.60830 6.64646 6.74644 6.81549 6.90223 7.22326 7.28140 7.45783 7.50948 7.73723 8.27614 8.81711 8.98616 9.51836 10.97826 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022057 B = 0.005561 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.134791 B = 5033.880999 C = 5575.654568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.127 3.873 3 C -0.056 4.056 4 C -0.121 4.121 5 C -0.129 4.129 6 C -0.131 4.131 7 C -0.126 4.126 8 C -0.090 4.090 9 C -0.116 4.116 10 C -0.133 4.133 11 C 0.055 3.945 12 N -0.508 5.508 13 C 0.026 3.974 14 C 0.197 3.803 15 H 0.060 0.940 16 O -0.578 6.578 17 C -0.563 4.563 18 H 0.070 0.930 19 C 0.084 3.916 20 N -0.894 5.894 21 Si 0.873 3.127 22 H -0.288 1.288 23 H -0.298 1.298 24 H -0.217 1.217 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.140 0.860 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.044 0.956 38 H 0.098 0.902 39 H 0.072 0.928 40 H 0.041 0.959 41 H 0.351 0.649 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.874 6.427 -16.822 18.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 C -0.057 4.057 4 C -0.140 4.140 5 C -0.147 4.147 6 C -0.149 4.149 7 C -0.144 4.144 8 C -0.108 4.108 9 C -0.154 4.154 10 C -0.171 4.171 11 C -0.072 4.072 12 N -0.231 5.231 13 C -0.101 4.101 14 C 0.139 3.861 15 H 0.078 0.922 16 O -0.384 6.384 17 C -0.600 4.600 18 H 0.088 0.912 19 C -0.121 4.121 20 N -0.531 5.531 21 Si 0.700 3.300 22 H -0.215 1.215 23 H -0.225 1.225 24 H -0.139 1.139 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.136 0.864 32 H 0.158 0.842 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.059 0.941 41 H 0.198 0.802 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.919 6.663 -16.264 18.546 hybrid contribution -0.850 -0.688 -0.039 1.094 sum 5.069 5.975 -16.303 18.089 Atomic orbital electron populations 1.22417 0.95438 1.01966 1.02383 1.20599 0.92819 0.91212 0.91719 1.19753 0.97014 0.94416 0.94492 1.20911 1.00683 0.93769 0.98606 1.20987 0.99049 0.95847 0.98792 1.21074 0.99288 0.99382 0.95118 1.21229 1.00430 0.94238 0.98526 1.21327 0.95608 0.95257 0.98640 1.22501 0.99587 0.97181 0.96160 1.22639 1.00017 0.97088 0.97335 1.23328 1.00441 0.89730 0.93689 1.64850 1.42113 1.11253 1.04898 1.23053 0.93241 1.01700 0.92152 1.19776 0.97519 0.78917 0.89862 0.92201 1.86763 1.36603 1.33140 1.81928 1.21466 1.09914 1.27282 1.01373 0.91158 1.24992 0.96360 0.95990 0.94720 1.69960 1.35900 1.39898 1.07334 0.87003 0.82661 0.80089 0.80294 1.21467 1.22470 1.13893 0.92599 0.92219 0.91409 0.86721 0.86715 0.86785 0.86425 0.84184 0.91639 0.91397 0.91705 0.91375 0.93792 0.88376 0.90932 0.94050 0.80186 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 6.74 37.16 0.25 -2.00 16 2 C 0.13 1.80 0.70 -131.69 -0.09 1.71 16 3 C -0.06 -0.80 4.62 -104.62 -0.48 -1.29 16 4 C -0.12 -1.52 8.65 -39.58 -0.34 -1.86 16 5 C -0.13 -1.50 10.05 -39.58 -0.40 -1.90 16 6 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 7 C -0.13 -1.68 10.05 -39.58 -0.40 -2.07 16 8 C -0.09 -1.36 9.32 -39.58 -0.37 -1.73 16 9 C -0.12 -1.44 6.00 -25.38 -0.15 -1.59 16 10 C -0.13 -1.71 7.06 -24.87 -0.18 -1.88 16 11 C 0.06 0.86 4.65 -1.75 -0.01 0.85 16 12 N -0.51 -8.36 3.47 -216.09 -0.75 -9.11 16 13 C 0.03 0.50 3.62 -3.82 -0.01 0.49 16 14 C 0.20 4.42 2.41 -27.88 -0.07 4.35 16 15 H 0.06 1.44 7.57 -51.93 -0.39 1.04 16 16 O -0.58 -12.16 6.42 -35.23 -0.23 -12.38 16 17 C -0.56 -15.31 9.34 -34.44 -0.32 -15.63 16 18 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16 19 C 0.08 2.38 5.47 -17.82 -0.10 2.29 16 20 N -0.89 -27.15 13.96 55.43 0.77 -26.38 16 21 Si 0.87 21.63 26.99 -169.99 -4.59 17.05 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.30 -7.48 7.11 56.52 0.40 -7.07 16 24 H -0.22 -5.16 5.30 56.52 0.30 -4.86 16 25 H 0.06 0.66 7.37 -51.93 -0.38 0.28 16 26 H 0.06 0.82 7.70 -51.93 -0.40 0.42 16 27 H 0.07 1.04 6.64 -51.93 -0.34 0.69 16 28 H 0.11 1.24 7.56 -52.48 -0.40 0.85 16 29 H 0.11 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.11 1.10 8.06 -52.49 -0.42 0.67 16 31 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 32 H 0.14 2.32 6.82 -52.49 -0.36 1.96 16 33 H 0.06 0.73 7.69 -51.93 -0.40 0.33 16 34 H 0.07 0.82 7.41 -51.93 -0.38 0.43 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.04 0.69 6.81 -51.93 -0.35 0.33 16 38 H 0.10 1.72 6.86 -51.93 -0.36 1.36 16 39 H 0.07 1.46 8.11 -51.93 -0.42 1.04 16 40 H 0.04 0.78 5.67 -51.93 -0.29 0.49 16 41 H 0.35 6.71 8.34 45.56 0.38 7.09 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 320.38 15.07 4.83 4.83 Total: -1.00 -29.81 320.38 -8.90 -38.72 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -5.87 Total: 9.52 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -3.07 Total: -22.24 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.02 Total: -35.49 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.23 Total: -12.38 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.59 Total: 17.05 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.81 -8.90 -38.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931693982.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.303 kcal (2) G-P(sol) polarization free energy of solvation -29.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds