Wall clock time and date at job start Mon Mar 30 2020 01:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50706 * 109.90333 * 2 1 4 4 C 1.38238 * 119.99775 * 300.69905 * 3 2 1 5 5 C 1.38235 * 119.99712 * 179.97438 * 4 3 2 6 6 C 1.38234 * 120.00220 * 359.97124 * 5 4 3 7 7 C 1.38233 * 120.00037 * 0.28719 * 6 5 4 8 8 C 1.38233 * 120.00212 * 120.71950 * 3 2 1 9 9 C 1.53985 * 109.92040 * 238.89759 * 2 1 3 10 10 C 1.54602 * 105.13826 * 241.67253 * 9 2 1 11 11 C 1.54929 * 102.91942 * 21.95643 * 10 9 2 12 12 N 1.47896 * 109.91750 * 121.09891 * 2 1 3 13 13 C 1.46906 * 110.99981 * 333.70944 * 12 2 1 14 14 C 1.53002 * 109.47118 * 170.00318 * 13 12 2 15 15 H 1.08994 * 109.47582 * 59.99620 * 14 13 12 16 16 O 1.42907 * 109.46721 * 299.99692 * 14 13 12 17 17 C 1.50695 * 109.47272 * 180.02562 * 14 13 12 18 18 H 1.08000 * 119.99803 * 359.97438 * 17 14 13 19 19 C 1.37872 * 120.00447 * 179.97438 * 17 14 13 20 20 N 1.31510 * 120.00322 * 179.97438 * 19 17 14 21 21 Si 1.86806 * 119.99855 * 359.97438 * 19 17 14 22 22 H 1.48497 * 109.47005 * 89.99740 * 21 19 17 23 23 H 1.48500 * 109.47388 * 210.00015 * 21 19 17 24 24 H 1.48505 * 109.47015 * 330.00048 * 21 19 17 25 25 H 1.09004 * 109.47173 * 59.30344 * 1 2 3 26 26 H 1.09005 * 109.46797 * 179.30032 * 1 2 3 27 27 H 1.08996 * 109.47933 * 299.29905 * 1 2 3 28 28 H 1.08005 * 120.00068 * 359.97438 * 4 3 2 29 29 H 1.07999 * 119.99770 * 179.97438 * 5 4 3 30 30 H 1.08002 * 119.99744 * 180.02562 * 6 5 4 31 31 H 1.07998 * 120.00395 * 179.72811 * 7 6 5 32 32 H 1.07999 * 119.99956 * 0.02562 * 8 3 2 33 33 H 1.09004 * 110.30865 * 0.58336 * 9 2 1 34 34 H 1.09001 * 110.31224 * 122.75933 * 9 2 1 35 35 H 1.08998 * 110.72284 * 140.31270 * 10 9 2 36 36 H 1.08995 * 110.72282 * 263.59280 * 10 9 2 37 37 H 1.09001 * 110.66929 * 81.02028 * 11 10 9 38 38 H 1.09004 * 110.66573 * 203.98439 * 11 10 9 39 39 H 1.09002 * 109.46982 * 289.99866 * 13 12 2 40 40 H 1.09000 * 109.47202 * 50.00164 * 13 12 2 41 41 H 0.96694 * 114.00247 * 300.00045 * 16 14 13 42 42 H 0.97002 * 119.99969 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0430 1.4170 0.0000 4 6 1.7036 2.2750 -1.0294 5 6 2.1738 3.5749 -1.0291 6 6 2.9828 4.0171 0.0008 7 6 3.3266 3.1576 1.0274 8 6 2.8533 1.8588 1.0291 9 6 2.0546 -0.7478 -1.2396 10 6 2.8579 -1.9441 -0.6794 11 6 2.2732 -2.1175 0.7448 12 7 2.0338 -0.7182 1.1907 13 6 1.0571 -0.6701 2.2869 14 6 1.4947 -1.6220 3.4020 15 1 2.4736 -1.3201 3.7741 16 8 1.5698 -2.9537 2.8892 17 6 0.4924 -1.5731 4.5263 18 1 -0.3701 -0.9273 4.4531 19 6 0.6766 -2.3527 5.6485 20 7 -0.1978 -2.3096 6.6298 21 14 2.1682 -3.4702 5.7749 22 1 3.2887 -2.7302 6.4090 23 1 1.8289 -4.6572 6.6001 24 1 2.5727 -3.9114 4.4158 25 1 -0.3634 0.5246 -0.8837 26 1 -0.3633 -1.0277 -0.0126 27 1 -0.3635 0.5029 0.8961 28 1 1.0711 1.9296 -1.8339 29 1 1.9090 4.2451 -1.8336 30 1 3.3498 5.0329 0.0012 31 1 3.9623 3.5017 1.8298 32 1 3.1191 1.1883 1.8330 33 1 1.2224 -1.1026 -1.8478 34 1 2.7036 -0.0982 -1.8269 35 1 2.6862 -2.8384 -1.2784 36 1 3.9209 -1.7074 -0.6339 37 1 1.3361 -2.6733 0.7109 38 1 2.9907 -2.6151 1.3972 39 1 0.9997 0.3457 2.6781 40 1 0.0780 -0.9720 1.9148 41 1 0.7326 -3.2887 2.5403 42 1 -0.0684 -2.8584 7.4192 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931693982.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:33 Heat of formation + Delta-G solvation = -25.833253 kcal Electronic energy + Delta-G solvation = -22287.235152 eV Core-core repulsion = 19231.641170 eV Total energy + Delta-G solvation = -3055.593982 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.42698 -39.30135 -37.63734 -34.46395 -33.32329 -33.22236 -31.61181 -30.11732 -29.91930 -26.61607 -26.30114 -23.52949 -23.39932 -22.53899 -21.39467 -20.14113 -19.18405 -17.92499 -16.88271 -16.60261 -16.48757 -16.20827 -16.03284 -15.73283 -15.15356 -14.91550 -14.51077 -14.33618 -14.18712 -14.02854 -13.73813 -13.52107 -13.25676 -13.07160 -12.95697 -12.70569 -12.46438 -12.22350 -12.10483 -11.90409 -11.73482 -11.62980 -11.51197 -11.31650 -11.02727 -10.80749 -9.94048 -9.69526 -9.47485 -9.18072 -8.35863 -6.50340 0.56205 0.63505 1.40249 1.45039 1.74488 2.43325 2.98465 3.02291 3.08052 3.70963 3.81264 3.98721 4.04245 4.13434 4.20453 4.27251 4.40276 4.43744 4.44978 4.49669 4.57839 4.62209 4.75255 4.81865 4.89057 4.98298 5.03932 5.07047 5.15796 5.19016 5.26087 5.31454 5.36713 5.42073 5.44565 5.56642 5.68611 5.75988 5.82586 6.05059 6.21077 6.23901 6.32522 6.62384 7.15759 7.32495 8.78490 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022057 B = 0.005561 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.134791 B = 5033.880999 C = 5575.654568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.125 3.875 3 C -0.071 4.071 4 C -0.124 4.124 5 C -0.126 4.126 6 C -0.132 4.132 7 C -0.138 4.138 8 C -0.118 4.118 9 C -0.109 4.109 10 C -0.124 4.124 11 C 0.053 3.947 12 N -0.515 5.515 13 C 0.047 3.953 14 C 0.209 3.791 15 H 0.047 0.953 16 O -0.572 6.572 17 C -0.563 4.563 18 H 0.033 0.967 19 C 0.030 3.970 20 N -0.941 5.941 21 Si 0.940 3.060 22 H -0.290 1.290 23 H -0.299 1.299 24 H -0.200 1.200 25 H 0.079 0.921 26 H 0.058 0.942 27 H 0.043 0.957 28 H 0.136 0.864 29 H 0.145 0.855 30 H 0.140 0.860 31 H 0.125 0.875 32 H 0.114 0.886 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.044 0.956 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.041 0.959 41 H 0.363 0.637 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.765 6.637 -19.899 21.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.035 3.965 3 C -0.071 4.071 4 C -0.142 4.142 5 C -0.144 4.144 6 C -0.150 4.150 7 C -0.156 4.156 8 C -0.136 4.136 9 C -0.147 4.147 10 C -0.162 4.162 11 C -0.075 4.075 12 N -0.238 5.238 13 C -0.081 4.081 14 C 0.151 3.849 15 H 0.065 0.935 16 O -0.379 6.379 17 C -0.601 4.601 18 H 0.051 0.949 19 C -0.170 4.170 20 N -0.580 5.580 21 Si 0.764 3.236 22 H -0.217 1.217 23 H -0.226 1.226 24 H -0.121 1.121 25 H 0.098 0.902 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.154 0.846 29 H 0.163 0.837 30 H 0.158 0.842 31 H 0.143 0.857 32 H 0.132 0.868 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.211 0.789 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.810 6.875 -19.367 21.650 hybrid contribution -1.172 -0.652 0.889 1.609 sum 5.638 6.224 -18.478 20.297 Atomic orbital electron populations 1.22370 0.95125 1.01935 1.02366 1.20703 0.93062 0.91381 0.91350 1.19848 0.97418 0.94788 0.95059 1.21155 1.00674 0.93914 0.98438 1.21390 0.97906 0.95921 0.99202 1.21405 0.98857 1.00278 0.94468 1.21405 1.00727 0.93906 0.99537 1.21251 0.97513 0.95986 0.98852 1.22489 1.00228 0.96698 0.95298 1.22583 0.99729 0.98359 0.95543 1.23272 1.00079 0.88915 0.95189 1.64773 1.41295 1.12288 1.05491 1.22623 0.93795 0.99456 0.92261 1.19442 0.95298 0.80412 0.89735 0.93508 1.86702 1.37285 1.32151 1.81767 1.21787 1.09543 1.25831 1.02942 0.94880 1.25845 0.99055 0.97677 0.94418 1.70087 1.38129 1.41534 1.08282 0.85980 0.78873 0.77881 0.80818 1.21705 1.22597 1.12117 0.90179 0.92272 0.93786 0.84612 0.83701 0.84243 0.85673 0.86792 0.89692 0.90584 0.89467 0.91640 0.93751 0.90480 0.92834 0.94083 0.78875 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.16 6.74 71.98 0.48 -3.68 16 2 C 0.12 3.36 0.70 2.92 0.00 3.37 16 3 C -0.07 -1.93 4.62 -19.86 -0.09 -2.02 16 4 C -0.12 -2.75 8.65 22.27 0.19 -2.56 16 5 C -0.13 -2.54 10.05 22.27 0.22 -2.31 16 6 C -0.13 -2.84 10.05 22.27 0.22 -2.62 16 7 C -0.14 -3.58 10.05 22.27 0.22 -3.36 16 8 C -0.12 -3.59 9.32 22.27 0.21 -3.38 16 9 C -0.11 -2.37 6.00 31.47 0.19 -2.18 16 10 C -0.12 -2.87 7.06 31.80 0.22 -2.65 16 11 C 0.05 1.57 4.65 86.59 0.40 1.98 16 12 N -0.51 -16.86 3.47 -837.56 -2.91 -19.77 16 13 C 0.05 1.84 3.62 86.30 0.31 2.15 16 14 C 0.21 9.54 2.41 29.85 0.07 9.62 16 15 H 0.05 2.28 7.57 -2.39 -0.02 2.27 16 16 O -0.57 -23.59 6.42 -148.98 -0.96 -24.55 16 17 C -0.56 -31.64 9.34 25.60 0.24 -31.40 16 18 H 0.03 2.06 7.99 -2.91 -0.02 2.03 16 19 C 0.03 1.72 5.47 84.65 0.46 2.18 16 20 N -0.94 -58.86 13.96 21.44 0.30 -58.56 16 21 Si 0.94 45.38 26.99 68.60 1.85 47.23 16 22 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 23 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 24 H -0.20 -9.00 5.30 99.48 0.53 -8.47 16 25 H 0.08 1.67 7.37 -2.38 -0.02 1.66 16 26 H 0.06 1.53 7.70 -2.38 -0.02 1.51 16 27 H 0.04 1.34 6.64 -2.39 -0.02 1.33 16 28 H 0.14 2.40 7.56 -2.91 -0.02 2.38 16 29 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 30 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 31 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 32 H 0.11 3.99 6.82 -2.91 -0.02 3.97 16 33 H 0.08 1.54 7.69 -2.38 -0.02 1.53 16 34 H 0.08 1.57 7.41 -2.39 -0.02 1.55 16 35 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.04 1.31 6.81 -2.39 -0.02 1.30 16 38 H 0.08 2.63 6.86 -2.39 -0.02 2.62 16 39 H 0.05 2.27 8.11 -2.39 -0.02 2.25 16 40 H 0.04 1.59 5.67 -2.39 -0.01 1.58 16 41 H 0.36 13.48 8.34 -74.06 -0.62 12.86 16 42 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -65.95 320.38 1.87 -64.08 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: 0.21 Total: 28.44 kcal Atomic # 6 Polarization: -40.24 SS G_CDS: 3.37 Total: -36.87 kcal Atomic # 7 Polarization: -75.72 SS G_CDS: -2.61 Total: -78.33 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.96 Total: -24.55 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.85 Total: 47.23 kcal Total: -65.95 1.87 -64.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931693982.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.248 kcal (2) G-P(sol) polarization free energy of solvation -65.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds