Wall clock time and date at job start Mon Mar 30 2020 02:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47399 * 2 1 4 4 C 1.50693 * 109.47512 * 180.02562 * 3 2 1 5 5 C 1.37983 * 120.07901 * 98.58642 * 4 3 2 6 6 C 1.38335 * 120.14413 * 180.02562 * 5 4 3 7 7 C 1.38380 * 120.29515 * 0.02562 * 6 5 4 8 8 C 1.37932 * 120.14640 * 0.02562 * 7 6 5 9 9 C 1.39560 * 120.06927 * 278.31750 * 4 3 2 10 10 C 1.47839 * 120.14963 * 359.97438 * 9 4 3 11 11 O 1.21561 * 119.99481 * 5.43238 * 10 9 4 12 12 N 1.34776 * 120.00562 * 185.43249 * 10 9 4 13 13 C 1.46497 * 119.99970 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47051 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47144 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47192 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00029 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00313 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99792 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00254 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47406 * 59.99434 * 20 18 16 22 22 H 1.48500 * 109.47423 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46907 * 299.99464 * 20 18 16 24 24 H 1.09004 * 109.46844 * 299.99832 * 1 2 3 25 25 H 1.09000 * 109.46664 * 59.99900 * 1 2 3 26 26 H 1.08999 * 109.47168 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46844 * 240.00168 * 2 1 3 28 28 H 1.08999 * 109.47405 * 120.00114 * 2 1 3 29 29 H 1.08996 * 109.46967 * 59.99875 * 3 2 1 30 30 H 1.08999 * 109.46935 * 300.00402 * 3 2 1 31 31 H 1.07992 * 119.92421 * 0.02793 * 5 4 3 32 32 H 1.08007 * 119.84891 * 179.97438 * 6 5 4 33 33 H 1.08004 * 119.92410 * 179.97438 * 7 6 5 34 34 H 1.07997 * 120.07509 * 179.97438 * 8 7 6 35 35 H 0.97001 * 119.99753 * 0.02562 * 12 10 9 36 36 H 1.08998 * 109.47363 * 300.00183 * 13 12 10 37 37 H 1.09002 * 109.47213 * 60.00030 * 13 12 10 38 38 H 1.08998 * 109.47163 * 300.00276 * 14 13 12 39 39 H 1.09003 * 109.46875 * 60.00435 * 14 13 12 40 40 H 1.08998 * 109.47390 * 300.00227 * 15 14 13 41 41 H 1.09002 * 109.47092 * 60.00017 * 15 14 13 42 42 H 0.97004 * 120.00069 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2381 1.6209 -1.1815 6 6 5.6214 1.6207 -1.1838 7 6 6.3214 1.4412 -0.0036 8 6 5.6428 1.2607 1.1836 9 6 4.2468 1.2676 1.1941 10 6 3.5130 1.0823 2.4641 11 8 2.3015 0.9832 2.4571 12 7 4.1872 1.0234 3.6296 13 6 3.4600 0.8404 4.8881 14 6 4.4534 0.8086 6.0513 15 6 3.6939 0.6181 7.3657 16 6 4.6723 0.5873 8.5114 17 1 5.7301 0.6926 8.3211 18 6 4.2171 0.4236 9.8025 19 7 2.9290 0.2949 10.0342 20 14 5.4299 0.3862 11.2228 21 1 6.1806 1.6669 11.2666 22 1 4.6927 0.2012 12.4985 23 1 6.3806 -0.7386 11.0323 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6768 1.9563 0.8899 30 1 1.6767 1.9563 -0.8899 31 1 3.6978 1.7612 -2.1060 32 1 6.1575 1.7604 -2.1109 33 1 7.4014 1.4416 -0.0123 34 1 6.1902 1.1203 2.1039 35 1 5.1540 1.1029 3.6352 36 1 2.7631 1.6666 5.0285 37 1 2.9079 -0.0989 4.8554 38 1 5.1506 -0.0175 5.9111 39 1 5.0050 1.7481 6.0838 40 1 2.9969 1.4443 7.5056 41 1 3.1419 -0.3213 7.3334 42 1 2.6087 0.1801 10.9426 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931967953.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:17 Heat of formation + Delta-G solvation = -41.683860 kcal Electronic energy + Delta-G solvation = -20477.094832 eV Core-core repulsion = 17420.813515 eV Total energy + Delta-G solvation = -3056.281316 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.45311 -38.33128 -35.78526 -34.75376 -33.32673 -31.84699 -31.18648 -30.64958 -27.07274 -26.27513 -24.04893 -22.91797 -22.15334 -20.91489 -20.74790 -19.97540 -17.69455 -16.45605 -16.09041 -15.73714 -15.34403 -15.29203 -14.83731 -14.47458 -14.23800 -14.05802 -13.88023 -13.29586 -13.23580 -12.57983 -12.28570 -12.17609 -12.03862 -11.82990 -11.71422 -11.67358 -11.13674 -10.95343 -10.89761 -10.73236 -10.62454 -10.51099 -9.86962 -9.69742 -9.31868 -9.18798 -9.12835 -8.94243 -8.67078 -8.37700 -6.02444 -4.05723 0.73877 1.15274 2.91337 3.31538 3.35598 3.36654 3.39924 3.73796 4.43599 4.56362 4.62683 4.65872 4.82638 5.06454 5.17440 5.21554 5.28013 5.33244 5.38609 5.55661 5.64502 5.75864 5.76824 5.79497 5.87852 5.94812 6.08625 6.14306 6.16146 6.21905 6.24039 6.34997 6.51530 6.58018 6.58679 6.70689 6.83376 6.99331 7.62300 7.70485 7.75111 7.96085 8.35778 8.39986 9.00715 9.58468 11.08817 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024129 B = 0.003191 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.142162 B = 8772.462512 C = 9816.117999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C -0.087 4.087 4 C -0.021 4.021 5 C -0.131 4.131 6 C -0.096 4.096 7 C -0.135 4.135 8 C -0.084 4.084 9 C -0.133 4.133 10 C 0.548 3.452 11 O -0.529 6.529 12 N -0.722 5.722 13 C 0.118 3.882 14 C -0.121 4.121 15 C 0.025 3.975 16 C -0.524 4.524 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.059 0.941 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.059 0.941 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.396 0.604 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.638 2.190 -23.891 24.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.144 4.144 3 C -0.124 4.124 4 C -0.022 4.022 5 C -0.149 4.149 6 C -0.114 4.114 7 C -0.153 4.153 8 C -0.103 4.103 9 C -0.136 4.136 10 C 0.335 3.665 11 O -0.407 6.407 12 N -0.372 5.372 13 C -0.005 4.005 14 C -0.160 4.160 15 C -0.013 4.013 16 C -0.562 4.562 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.119 0.881 30 H 0.078 0.922 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.231 0.769 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.617 2.087 -23.702 23.937 hybrid contribution 1.284 0.010 0.872 1.552 sum 3.901 2.097 -22.830 23.255 Atomic orbital electron populations 1.21707 0.95823 1.01263 1.01596 1.21349 0.95741 0.95627 1.01666 1.20869 0.89509 0.98609 1.03418 1.20088 0.96661 0.93973 0.91487 1.21058 0.94226 1.02046 0.97561 1.21321 0.94266 0.97583 0.98217 1.21074 1.00142 1.01653 0.92448 1.21358 0.93074 0.97192 0.98664 1.19937 0.93593 1.06230 0.93827 1.18278 0.87328 0.77292 0.83593 1.90728 1.13396 1.49670 1.86941 1.46170 1.10820 1.73369 1.06887 1.21658 0.95616 1.01700 0.81520 1.21897 0.97842 1.00877 0.95335 1.19018 0.95491 0.97502 0.89296 1.21167 0.93348 1.50162 0.91529 0.92704 1.25027 0.95144 0.95263 0.98994 1.69955 1.12876 1.49611 1.20836 0.86641 0.81121 0.78569 0.81554 1.20239 1.21258 1.20234 0.92197 0.93422 0.93115 0.93304 0.90944 0.88055 0.92211 0.85586 0.85772 0.85538 0.85514 0.76901 0.91642 0.91626 0.92740 0.92737 0.96266 0.96266 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 37.16 0.37 -1.24 16 2 C -0.11 -1.27 5.44 -26.73 -0.15 -1.42 16 3 C -0.09 -1.03 4.61 -27.89 -0.13 -1.16 16 4 C -0.02 -0.25 5.17 -104.23 -0.54 -0.79 16 5 C -0.13 -1.24 9.66 -39.64 -0.38 -1.62 16 6 C -0.10 -0.80 10.04 -39.49 -0.40 -1.19 16 7 C -0.14 -1.17 10.03 -39.64 -0.40 -1.57 16 8 C -0.08 -0.86 9.53 -39.18 -0.37 -1.24 16 9 C -0.13 -1.67 5.87 -104.97 -0.62 -2.29 16 10 C 0.55 8.29 7.64 -12.33 -0.09 8.19 16 11 O -0.53 -9.26 11.59 5.31 0.06 -9.20 16 12 N -0.72 -10.51 5.51 -61.25 -0.34 -10.85 16 13 C 0.12 2.06 5.67 -4.04 -0.02 2.04 16 14 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 15 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 16 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 17 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 20 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 1.04 6.57 -51.93 -0.34 0.70 16 29 H 0.10 1.44 5.96 -51.93 -0.31 1.13 16 30 H 0.06 0.59 8.02 -51.93 -0.42 0.17 16 31 H 0.13 0.93 8.04 -52.49 -0.42 0.51 16 32 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 33 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 34 H 0.13 1.08 6.45 -52.49 -0.34 0.74 16 35 H 0.40 4.74 6.54 -40.82 -0.27 4.48 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 344.79 15.07 5.20 5.20 Total: -1.00 -31.35 344.79 -9.49 -40.84 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -6.71 Total: 1.36 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -3.42 Total: -17.70 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.40 Total: -36.93 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.06 Total: -9.20 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.35 -9.49 -40.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931967953.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.839 kcal (2) G-P(sol) polarization free energy of solvation -31.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds