Wall clock time and date at job start Mon Mar 30 2020 02:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47399 * 2 1 4 4 C 1.50693 * 109.47512 * 180.02562 * 3 2 1 5 5 C 1.37983 * 120.07901 * 98.58642 * 4 3 2 6 6 C 1.38335 * 120.14413 * 180.02562 * 5 4 3 7 7 C 1.38380 * 120.29515 * 0.02562 * 6 5 4 8 8 C 1.37932 * 120.14640 * 0.02562 * 7 6 5 9 9 C 1.39560 * 120.06927 * 278.31750 * 4 3 2 10 10 C 1.47839 * 120.14963 * 359.97438 * 9 4 3 11 11 O 1.21561 * 119.99481 * 5.43238 * 10 9 4 12 12 N 1.34776 * 120.00562 * 185.43249 * 10 9 4 13 13 C 1.46497 * 119.99970 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47051 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47144 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47192 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00029 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00313 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99792 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00254 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47406 * 59.99434 * 20 18 16 22 22 H 1.48500 * 109.47423 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46907 * 299.99464 * 20 18 16 24 24 H 1.09004 * 109.46844 * 299.99832 * 1 2 3 25 25 H 1.09000 * 109.46664 * 59.99900 * 1 2 3 26 26 H 1.08999 * 109.47168 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46844 * 240.00168 * 2 1 3 28 28 H 1.08999 * 109.47405 * 120.00114 * 2 1 3 29 29 H 1.08996 * 109.46967 * 59.99875 * 3 2 1 30 30 H 1.08999 * 109.46935 * 300.00402 * 3 2 1 31 31 H 1.07992 * 119.92421 * 0.02793 * 5 4 3 32 32 H 1.08007 * 119.84891 * 179.97438 * 6 5 4 33 33 H 1.08004 * 119.92410 * 179.97438 * 7 6 5 34 34 H 1.07997 * 120.07509 * 179.97438 * 8 7 6 35 35 H 0.97001 * 119.99753 * 0.02562 * 12 10 9 36 36 H 1.08998 * 109.47363 * 300.00183 * 13 12 10 37 37 H 1.09002 * 109.47213 * 60.00030 * 13 12 10 38 38 H 1.08998 * 109.47163 * 300.00276 * 14 13 12 39 39 H 1.09003 * 109.46875 * 60.00435 * 14 13 12 40 40 H 1.08998 * 109.47390 * 300.00227 * 15 14 13 41 41 H 1.09002 * 109.47092 * 60.00017 * 15 14 13 42 42 H 0.97004 * 120.00069 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2381 1.6209 -1.1815 6 6 5.6214 1.6207 -1.1838 7 6 6.3214 1.4412 -0.0036 8 6 5.6428 1.2607 1.1836 9 6 4.2468 1.2676 1.1941 10 6 3.5130 1.0823 2.4641 11 8 2.3015 0.9832 2.4571 12 7 4.1872 1.0234 3.6296 13 6 3.4600 0.8404 4.8881 14 6 4.4534 0.8086 6.0513 15 6 3.6939 0.6181 7.3657 16 6 4.6723 0.5873 8.5114 17 1 5.7301 0.6926 8.3211 18 6 4.2171 0.4236 9.8025 19 7 2.9290 0.2949 10.0342 20 14 5.4299 0.3862 11.2228 21 1 6.1806 1.6669 11.2666 22 1 4.6927 0.2012 12.4985 23 1 6.3806 -0.7386 11.0323 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6768 1.9563 0.8899 30 1 1.6767 1.9563 -0.8899 31 1 3.6978 1.7612 -2.1060 32 1 6.1575 1.7604 -2.1109 33 1 7.4014 1.4416 -0.0123 34 1 6.1902 1.1203 2.1039 35 1 5.1540 1.1029 3.6352 36 1 2.7631 1.6666 5.0285 37 1 2.9079 -0.0989 4.8554 38 1 5.1506 -0.0175 5.9111 39 1 5.0050 1.7481 6.0838 40 1 2.9969 1.4443 7.5056 41 1 3.1419 -0.3213 7.3334 42 1 2.6087 0.1801 10.9426 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931967953.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:16 Heat of formation + Delta-G solvation = -59.189284 kcal Electronic energy + Delta-G solvation = -20477.853924 eV Core-core repulsion = 17420.813515 eV Total energy + Delta-G solvation = -3057.040409 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.45049 -39.32456 -37.12465 -35.93657 -35.07354 -33.31204 -32.00259 -31.86250 -28.67222 -27.35239 -25.42265 -24.20432 -23.07232 -22.36020 -21.84799 -21.19250 -18.78087 -18.42908 -17.14151 -16.75412 -16.60534 -16.51201 -16.27655 -15.77479 -15.50446 -15.11088 -14.71637 -14.46375 -14.25269 -14.10393 -13.77712 -13.55138 -13.30658 -12.97963 -12.86891 -12.71822 -12.58897 -12.45417 -12.38816 -12.03692 -11.77234 -11.70973 -11.55157 -11.45430 -11.24404 -10.58295 -10.55675 -10.15928 -9.86007 -9.63076 -8.20172 -6.32056 -0.08785 0.42675 1.41186 1.44400 1.52265 1.90791 2.17760 2.42300 2.89022 3.13453 3.72266 3.80387 3.87635 4.12386 4.16984 4.19172 4.24784 4.30145 4.47288 4.51196 4.52243 4.56236 4.78012 4.89273 4.92141 4.94927 4.95863 5.03177 5.05551 5.14543 5.25465 5.34289 5.37151 5.40808 5.48930 5.52845 5.56153 5.68828 5.69310 5.82732 5.99612 6.21108 6.56361 6.85193 7.23374 7.37636 8.91821 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024129 B = 0.003191 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.142162 B = 8772.462512 C = 9816.117999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.103 4.103 3 C -0.084 4.084 4 C -0.039 4.039 5 C -0.133 4.133 6 C -0.087 4.087 7 C -0.134 4.134 8 C -0.089 4.089 9 C -0.158 4.158 10 C 0.543 3.457 11 O -0.561 6.561 12 N -0.714 5.714 13 C 0.133 3.867 14 C -0.102 4.102 15 C 0.025 3.975 16 C -0.543 4.543 17 H 0.067 0.933 18 C -0.003 4.003 19 N -0.935 5.935 20 Si 0.968 3.032 21 H -0.265 1.265 22 H -0.286 1.286 23 H -0.265 1.265 24 H 0.038 0.962 25 H 0.067 0.933 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.040 0.960 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.149 0.851 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.140 0.860 35 H 0.411 0.589 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.067 0.933 40 H -0.008 1.008 41 H -0.008 1.008 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.553 2.557 -25.924 26.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.140 4.140 3 C -0.121 4.121 4 C -0.040 4.040 5 C -0.151 4.151 6 C -0.104 4.104 7 C -0.151 4.151 8 C -0.108 4.108 9 C -0.161 4.161 10 C 0.332 3.668 11 O -0.442 6.442 12 N -0.366 5.366 13 C 0.009 3.991 14 C -0.140 4.140 15 C -0.013 4.013 16 C -0.581 4.581 17 H 0.085 0.915 18 C -0.201 4.201 19 N -0.576 5.576 20 Si 0.792 3.208 21 H -0.190 1.190 22 H -0.211 1.211 23 H -0.190 1.190 24 H 0.057 0.943 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.166 0.834 32 H 0.176 0.824 33 H 0.174 0.826 34 H 0.158 0.842 35 H 0.248 0.752 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.010 0.990 41 H 0.010 0.990 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.569 2.459 -25.758 26.467 hybrid contribution 0.372 -0.097 1.411 1.463 sum 5.941 2.362 -24.346 25.172 Atomic orbital electron populations 1.21689 0.95301 1.01609 1.01547 1.21292 0.96228 0.95754 1.00748 1.20770 0.90284 0.98171 1.02837 1.20209 0.96463 0.95048 0.92279 1.21335 0.95068 1.01316 0.97344 1.21769 0.93882 0.95304 0.99492 1.21466 1.01667 1.00242 0.91770 1.21578 0.92037 0.96881 1.00255 1.19821 0.94671 1.09071 0.92548 1.18828 0.87178 0.76318 0.84482 1.90720 1.14985 1.51012 1.87487 1.45935 1.11429 1.73535 1.05742 1.21219 0.95010 1.00344 0.82534 1.21603 0.97531 1.02002 0.92855 1.18927 0.95151 0.94983 0.92239 1.21656 0.94263 1.49742 0.92454 0.91505 1.26035 0.97053 0.94731 1.02274 1.70108 1.15153 1.50734 1.21561 0.85460 0.78597 0.79265 0.77475 1.18985 1.21144 1.18964 0.94277 0.91355 0.92593 0.91702 0.94150 0.91172 0.90090 0.83360 0.82417 0.82632 0.84199 0.75174 0.93191 0.93181 0.91381 0.91415 0.98991 0.98986 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.91 71.98 0.71 -2.50 16 2 C -0.10 -2.50 5.44 30.59 0.17 -2.34 16 3 C -0.08 -2.00 4.61 29.85 0.14 -1.86 16 4 C -0.04 -0.88 5.17 -19.61 -0.10 -0.98 16 5 C -0.13 -2.12 9.66 22.23 0.21 -1.91 16 6 C -0.09 -1.08 10.04 22.33 0.22 -0.86 16 7 C -0.13 -1.82 10.03 22.23 0.22 -1.60 16 8 C -0.09 -1.64 9.53 22.53 0.21 -1.43 16 9 C -0.16 -3.92 5.87 -20.09 -0.12 -4.04 16 10 C 0.54 17.00 7.64 86.78 0.66 17.66 16 11 O -0.56 -21.05 11.59 -3.91 -0.05 -21.10 16 12 N -0.71 -21.08 5.51 -465.97 -2.57 -23.65 16 13 C 0.13 4.84 5.67 86.38 0.49 5.33 16 14 C -0.10 -4.00 5.27 30.59 0.16 -3.84 16 15 C 0.02 1.30 4.97 29.85 0.15 1.45 16 16 C -0.54 -30.53 9.11 25.60 0.23 -30.30 16 17 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 18 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 19 N -0.94 -57.55 13.29 21.45 0.28 -57.27 16 20 Si 0.97 43.91 29.54 68.60 2.03 45.93 16 21 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 22 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 23 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 24 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 27 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.04 1.23 6.57 -2.39 -0.02 1.22 16 29 H 0.07 2.12 5.96 -2.39 -0.01 2.11 16 30 H 0.08 1.52 8.02 -2.39 -0.02 1.50 16 31 H 0.15 1.64 8.04 -2.91 -0.02 1.62 16 32 H 0.16 0.94 8.06 -2.91 -0.02 0.91 16 33 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 34 H 0.14 2.07 6.45 -2.91 -0.02 2.05 16 35 H 0.41 9.48 6.54 -92.71 -0.61 8.87 16 36 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 40 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 41 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 42 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -70.59 344.79 3.92 -66.67 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.39 Total: 16.36 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: 3.83 Total: -26.94 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -2.28 Total: -80.92 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.05 Total: -21.10 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -70.59 3.92 -66.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931967953.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.478 kcal (2) G-P(sol) polarization free energy of solvation -70.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds