Wall clock time and date at job start Mon Mar 30 2020 01:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46898 * 109.43974 * 2 1 4 4 C 1.46897 * 110.99844 * 65.13802 * 3 2 1 5 5 C 1.52999 * 109.47256 * 178.49338 * 4 3 2 6 6 C 1.53007 * 109.47043 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.47025 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99968 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00078 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99737 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99877 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47293 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46960 * 120.00174 * 11 9 7 14 14 H 1.48494 * 109.47325 * 239.99709 * 11 9 7 15 15 C 1.53074 * 109.43883 * 119.91840 * 2 1 3 16 16 C 1.53413 * 108.29448 * 71.85183 * 15 2 1 17 17 O 1.42829 * 108.37963 * 64.71975 * 16 15 2 18 18 C 1.35851 * 117.86014 * 310.83400 * 17 16 15 19 19 C 1.39140 * 118.49267 * 196.99821 * 18 17 16 20 20 C 1.37971 * 120.21268 * 180.23438 * 19 18 17 21 21 C 1.38291 * 119.95652 * 0.08858 * 20 19 18 22 22 C 1.38100 * 119.98574 * 359.87987 * 21 20 19 23 23 C 1.38373 * 121.80649 * 17.18682 * 18 17 16 24 24 H 1.08999 * 109.47319 * 300.08300 * 1 2 3 25 25 H 1.09010 * 109.47513 * 60.07984 * 1 2 3 26 26 H 1.08999 * 109.47537 * 180.02562 * 1 2 3 27 27 H 1.00909 * 111.00072 * 301.18794 * 3 2 1 28 28 H 1.09002 * 109.47363 * 298.48989 * 4 3 2 29 29 H 1.08998 * 109.47541 * 58.48680 * 4 3 2 30 30 H 1.08999 * 109.46848 * 299.99595 * 5 4 3 31 31 H 1.08994 * 109.47615 * 59.99677 * 5 4 3 32 32 H 1.08999 * 109.46938 * 299.99503 * 6 5 4 33 33 H 1.08997 * 109.47128 * 59.99914 * 6 5 4 34 34 H 0.97005 * 119.99493 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.69700 * 312.15429 * 15 2 1 36 36 H 1.09000 * 109.73009 * 191.56979 * 15 2 1 37 37 H 1.09002 * 109.68255 * 304.99654 * 16 15 2 38 38 H 1.09000 * 109.71242 * 184.46229 * 16 15 2 39 39 H 1.08000 * 119.89753 * 359.96104 * 19 18 17 40 40 H 1.07999 * 120.02242 * 180.02562 * 20 19 18 41 41 H 1.07998 * 120.00365 * 179.91855 * 21 20 19 42 42 H 1.08001 * 119.84074 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0188 1.3852 0.0000 4 6 1.6503 2.0735 1.2443 5 6 2.2077 3.4982 1.2235 6 6 1.8244 4.2149 2.5198 7 6 2.3739 5.6180 2.4996 8 1 2.9396 5.9641 1.6471 9 6 2.1537 6.4602 3.5687 10 7 1.4635 6.0392 4.6061 11 14 2.8355 8.1991 3.5439 12 1 3.5690 8.4251 2.2726 13 1 1.7174 9.1707 3.6491 14 1 3.7615 8.3841 4.6898 15 6 2.0394 -0.7200 1.2511 16 6 1.7718 -2.2214 1.0852 17 8 2.5552 -2.7003 -0.0088 18 6 2.5078 -2.0060 -1.1755 19 6 2.9570 -2.6275 -2.3365 20 6 2.9294 -1.9536 -3.5401 21 6 2.4556 -0.6554 -3.5939 22 6 2.0083 -0.0357 -2.4436 23 6 2.0316 -0.7081 -1.2329 24 1 -0.3634 0.5151 0.8892 25 1 -0.3634 0.5126 -0.8908 26 1 -0.3634 -1.0276 0.0005 27 1 1.6791 1.8886 -0.8059 28 1 0.5644 2.1095 1.3318 29 1 2.0655 1.5333 2.0951 30 1 3.2936 3.4622 1.1361 31 1 1.7925 4.0385 0.3728 32 1 0.7385 4.2508 2.6076 33 1 2.2400 3.6745 3.3703 34 1 1.3089 6.6316 5.3585 35 1 1.5122 -0.3477 2.1295 36 1 3.1097 -0.5478 1.3646 37 1 0.7141 -2.3853 0.8788 38 1 2.0537 -2.7481 1.9970 39 1 3.3327 -3.6392 -2.2947 40 1 3.2784 -2.4391 -4.4394 41 1 2.4348 -0.1267 -4.5354 42 1 1.6391 0.9783 -2.4883 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933366831.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:13 Heat of formation + Delta-G solvation = -26.010870 kcal Electronic energy + Delta-G solvation = -21196.146861 eV Core-core repulsion = 18140.545176 eV Total energy + Delta-G solvation = -3055.601685 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.08436 -37.57702 -37.54867 -34.25321 -32.43301 -30.91263 -30.47730 -29.97109 -28.11705 -26.08953 -24.44203 -23.64455 -22.52322 -21.70100 -20.18902 -18.95509 -17.98987 -16.64457 -16.42915 -16.06672 -15.31199 -15.19452 -14.80075 -14.45433 -14.32760 -14.01924 -13.74524 -13.67456 -13.38176 -12.58605 -12.39981 -12.25348 -12.17068 -11.95515 -11.71485 -11.61092 -11.26774 -11.02444 -10.85593 -10.71326 -10.61103 -10.43525 -10.41479 -9.69926 -9.36032 -9.06289 -8.91195 -8.34850 -8.30473 -8.11594 -5.99904 -4.01732 1.24381 1.36011 3.19213 3.31337 3.38796 3.43463 3.65533 4.25699 4.41483 4.47676 4.59687 4.67007 4.91991 4.94136 5.00251 5.11513 5.25910 5.33668 5.36189 5.37579 5.43197 5.55699 5.62753 5.78872 5.79125 5.83337 5.90212 5.99274 6.12025 6.23023 6.31971 6.38941 6.45050 6.68257 6.71735 6.77393 7.12848 7.30066 7.35875 7.56111 7.68442 7.82940 8.00580 8.44145 9.05667 9.62415 11.11589 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029913 B = 0.003406 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.816369 B = 8218.574693 C = 8746.730002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.156 3.844 3 N -0.674 5.674 4 C 0.054 3.946 5 C -0.106 4.106 6 C 0.023 3.977 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.055 3.945 10 N -0.897 5.897 11 Si 0.891 3.109 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.284 1.284 15 C -0.150 4.150 16 C 0.062 3.938 17 O -0.318 6.318 18 C 0.136 3.864 19 C -0.154 4.154 20 C -0.090 4.090 21 C -0.155 4.155 22 C -0.071 4.071 23 C -0.135 4.135 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.338 0.662 28 H 0.028 0.972 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.044 0.956 32 H 0.013 0.987 33 H 0.015 0.985 34 H 0.259 0.741 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.064 0.936 38 H 0.109 0.891 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.226 -18.466 -12.934 22.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.065 3.935 3 N -0.305 5.305 4 C -0.074 4.074 5 C -0.144 4.144 6 C -0.015 4.015 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.719 3.281 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.210 1.210 15 C -0.188 4.188 16 C -0.013 4.013 17 O -0.232 6.232 18 C 0.091 3.909 19 C -0.173 4.173 20 C -0.108 4.108 21 C -0.173 4.173 22 C -0.089 4.089 23 C -0.136 4.136 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.158 0.842 28 H 0.046 0.954 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.031 0.969 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.127 0.873 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.555 -18.727 -12.482 22.513 hybrid contribution -0.773 1.417 0.047 1.615 sum -1.328 -17.310 -12.434 21.355 Atomic orbital electron populations 1.22641 0.96124 1.02329 1.02792 1.19576 0.92053 0.90098 0.91779 1.60780 1.63436 1.00535 1.05745 1.22235 0.97721 0.96297 0.91124 1.21619 1.00327 0.91856 1.00646 1.19062 0.96539 0.94668 0.91223 1.21298 1.33702 0.97648 1.02972 0.92622 1.25030 0.95326 0.98603 0.95590 1.69977 1.40393 1.36131 1.07133 0.86542 0.78781 0.84712 0.78020 1.19711 1.21062 1.21006 1.22362 1.03978 0.94411 0.98024 1.23067 0.95027 0.94855 0.88376 1.85963 1.65730 1.52187 1.19319 1.18691 0.96538 0.89972 0.85737 1.20543 1.05594 1.00835 0.90309 1.20886 0.98429 0.94655 0.96873 1.21001 1.02338 0.95605 0.98392 1.20833 0.97567 0.99174 0.91374 1.19683 1.04888 0.93341 0.95691 0.91295 0.92215 0.92299 0.84230 0.95353 0.91141 0.92558 0.93699 0.96851 0.96620 0.93108 0.89399 0.89270 0.91769 0.87341 0.85480 0.85672 0.86003 0.85990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 8.10 37.15 0.30 -1.75 16 2 C 0.16 1.98 0.58 -132.69 -0.08 1.90 16 3 N -0.67 -9.81 5.89 -101.07 -0.60 -10.40 16 4 C 0.05 0.91 4.90 -3.83 -0.02 0.89 16 5 C -0.11 -2.20 5.43 -26.73 -0.15 -2.34 16 6 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 7 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 10 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 11 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 C -0.15 -1.81 4.05 -26.48 -0.11 -1.92 16 16 C 0.06 0.64 6.96 37.37 0.26 0.90 16 17 O -0.32 -4.00 10.27 -19.27 -0.20 -4.20 16 18 C 0.14 1.75 6.47 -39.20 -0.25 1.49 16 19 C -0.15 -1.73 9.94 -39.34 -0.39 -2.12 16 20 C -0.09 -0.89 10.04 -39.66 -0.40 -1.29 16 21 C -0.16 -1.60 10.04 -39.61 -0.40 -2.00 16 22 C -0.07 -0.83 9.17 -39.53 -0.36 -1.19 16 23 C -0.13 -1.72 4.84 -104.44 -0.51 -2.23 16 24 H 0.07 0.82 6.55 -51.93 -0.34 0.48 16 25 H 0.06 0.66 8.12 -51.92 -0.42 0.24 16 26 H 0.06 0.61 6.65 -51.93 -0.35 0.26 16 27 H 0.34 4.63 7.07 -39.29 -0.28 4.36 16 28 H 0.03 0.47 6.51 -51.93 -0.34 0.13 16 29 H 0.07 1.20 6.41 -51.93 -0.33 0.87 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.09 1.02 7.01 -51.93 -0.36 0.66 16 36 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.06 0.60 6.57 -51.93 -0.34 0.26 16 38 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 40 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 42 H 0.12 1.31 6.64 -52.49 -0.35 0.96 16 LS Contribution 330.98 15.07 4.99 4.99 Total: -1.00 -31.18 330.98 -9.19 -40.37 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -6.46 Total: 1.61 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: -2.65 Total: -22.83 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.14 Total: -36.73 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -0.20 Total: -4.20 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.18 -9.19 -40.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933366831.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.359 kcal (2) G-P(sol) polarization free energy of solvation -31.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds