Wall clock time and date at job start Mon Mar 30 2020 01:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46898 * 109.43974 * 2 1 4 4 C 1.46897 * 110.99844 * 65.13802 * 3 2 1 5 5 C 1.52999 * 109.47256 * 178.49338 * 4 3 2 6 6 C 1.53007 * 109.47043 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.47025 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99968 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00078 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99737 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99877 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47293 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46960 * 120.00174 * 11 9 7 14 14 H 1.48494 * 109.47325 * 239.99709 * 11 9 7 15 15 C 1.53074 * 109.43883 * 119.91840 * 2 1 3 16 16 C 1.53413 * 108.29448 * 71.85183 * 15 2 1 17 17 O 1.42829 * 108.37963 * 64.71975 * 16 15 2 18 18 C 1.35851 * 117.86014 * 310.83400 * 17 16 15 19 19 C 1.39140 * 118.49267 * 196.99821 * 18 17 16 20 20 C 1.37971 * 120.21268 * 180.23438 * 19 18 17 21 21 C 1.38291 * 119.95652 * 0.08858 * 20 19 18 22 22 C 1.38100 * 119.98574 * 359.87987 * 21 20 19 23 23 C 1.38373 * 121.80649 * 17.18682 * 18 17 16 24 24 H 1.08999 * 109.47319 * 300.08300 * 1 2 3 25 25 H 1.09010 * 109.47513 * 60.07984 * 1 2 3 26 26 H 1.08999 * 109.47537 * 180.02562 * 1 2 3 27 27 H 1.00909 * 111.00072 * 301.18794 * 3 2 1 28 28 H 1.09002 * 109.47363 * 298.48989 * 4 3 2 29 29 H 1.08998 * 109.47541 * 58.48680 * 4 3 2 30 30 H 1.08999 * 109.46848 * 299.99595 * 5 4 3 31 31 H 1.08994 * 109.47615 * 59.99677 * 5 4 3 32 32 H 1.08999 * 109.46938 * 299.99503 * 6 5 4 33 33 H 1.08997 * 109.47128 * 59.99914 * 6 5 4 34 34 H 0.97005 * 119.99493 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.69700 * 312.15429 * 15 2 1 36 36 H 1.09000 * 109.73009 * 191.56979 * 15 2 1 37 37 H 1.09002 * 109.68255 * 304.99654 * 16 15 2 38 38 H 1.09000 * 109.71242 * 184.46229 * 16 15 2 39 39 H 1.08000 * 119.89753 * 359.96104 * 19 18 17 40 40 H 1.07999 * 120.02242 * 180.02562 * 20 19 18 41 41 H 1.07998 * 120.00365 * 179.91855 * 21 20 19 42 42 H 1.08001 * 119.84074 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0188 1.3852 0.0000 4 6 1.6503 2.0735 1.2443 5 6 2.2077 3.4982 1.2235 6 6 1.8244 4.2149 2.5198 7 6 2.3739 5.6180 2.4996 8 1 2.9396 5.9641 1.6471 9 6 2.1537 6.4602 3.5687 10 7 1.4635 6.0392 4.6061 11 14 2.8355 8.1991 3.5439 12 1 3.5690 8.4251 2.2726 13 1 1.7174 9.1707 3.6491 14 1 3.7615 8.3841 4.6898 15 6 2.0394 -0.7200 1.2511 16 6 1.7718 -2.2214 1.0852 17 8 2.5552 -2.7003 -0.0088 18 6 2.5078 -2.0060 -1.1755 19 6 2.9570 -2.6275 -2.3365 20 6 2.9294 -1.9536 -3.5401 21 6 2.4556 -0.6554 -3.5939 22 6 2.0083 -0.0357 -2.4436 23 6 2.0316 -0.7081 -1.2329 24 1 -0.3634 0.5151 0.8892 25 1 -0.3634 0.5126 -0.8908 26 1 -0.3634 -1.0276 0.0005 27 1 1.6791 1.8886 -0.8059 28 1 0.5644 2.1095 1.3318 29 1 2.0655 1.5333 2.0951 30 1 3.2936 3.4622 1.1361 31 1 1.7925 4.0385 0.3728 32 1 0.7385 4.2508 2.6076 33 1 2.2400 3.6745 3.3703 34 1 1.3089 6.6316 5.3585 35 1 1.5122 -0.3477 2.1295 36 1 3.1097 -0.5478 1.3646 37 1 0.7141 -2.3853 0.8788 38 1 2.0537 -2.7481 1.9970 39 1 3.3327 -3.6392 -2.2947 40 1 3.2784 -2.4391 -4.4394 41 1 2.4348 -0.1267 -4.5354 42 1 1.6391 0.9783 -2.4883 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933366831.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:13 Heat of formation + Delta-G solvation = -44.477851 kcal Electronic energy + Delta-G solvation = -21196.947649 eV Core-core repulsion = 18140.545176 eV Total energy + Delta-G solvation = -3056.402473 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.98511 -38.66183 -38.40181 -36.03326 -34.20401 -31.99340 -31.53872 -31.09840 -29.12904 -27.83178 -25.32505 -25.02464 -23.74043 -22.75717 -21.90849 -19.89894 -18.92743 -18.43585 -17.53371 -17.13485 -16.57760 -16.48565 -16.17299 -15.75564 -15.42330 -15.06458 -14.73188 -14.69808 -14.48426 -14.28518 -13.71260 -13.56292 -13.30428 -13.10735 -12.93906 -12.85625 -12.67431 -12.45626 -12.38785 -12.18435 -11.92480 -11.61161 -11.49588 -11.44880 -11.29218 -11.07670 -10.56363 -9.80212 -9.38226 -9.06372 -8.21085 -6.31733 0.40147 0.51060 1.39347 1.39780 1.53289 2.36252 2.40463 2.79125 3.12208 3.17860 3.49533 3.69138 3.77764 4.01939 4.06383 4.21987 4.22644 4.26324 4.39230 4.48833 4.52864 4.54243 4.59893 4.67980 4.72797 4.77119 4.90054 4.94755 5.02196 5.09490 5.12577 5.20263 5.23638 5.40586 5.50873 5.55535 5.63019 5.74654 5.85404 5.90092 6.05534 6.26917 6.41876 6.49222 6.85208 7.37542 8.90941 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029913 B = 0.003406 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.816369 B = 8218.574693 C = 8746.730002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.156 3.844 3 N -0.677 5.677 4 C 0.071 3.929 5 C -0.092 4.092 6 C 0.027 3.973 7 C -0.543 4.543 8 H 0.058 0.942 9 C -0.001 4.001 10 N -0.933 5.933 11 Si 0.965 3.035 12 H -0.263 1.263 13 H -0.277 1.277 14 H -0.278 1.278 15 C -0.150 4.150 16 C 0.063 3.937 17 O -0.330 6.330 18 C 0.115 3.885 19 C -0.164 4.164 20 C -0.087 4.087 21 C -0.157 4.157 22 C -0.085 4.085 23 C -0.152 4.152 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.344 0.656 28 H 0.031 0.969 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.049 0.951 32 H -0.007 1.007 33 H -0.009 1.009 34 H 0.264 0.736 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.130 0.870 39 H 0.140 0.860 40 H 0.156 0.844 41 H 0.145 0.855 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.969 -18.739 -14.539 23.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.066 3.934 3 N -0.309 5.309 4 C -0.058 4.058 5 C -0.130 4.130 6 C -0.010 4.010 7 C -0.581 4.581 8 H 0.076 0.924 9 C -0.198 4.198 10 N -0.573 5.573 11 Si 0.789 3.211 12 H -0.187 1.187 13 H -0.202 1.202 14 H -0.203 1.203 15 C -0.188 4.188 16 C -0.012 4.012 17 O -0.245 6.245 18 C 0.069 3.931 19 C -0.182 4.182 20 C -0.104 4.104 21 C -0.175 4.175 22 C -0.103 4.103 23 C -0.153 4.153 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.164 0.836 28 H 0.049 0.951 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.011 0.989 33 H 0.010 0.990 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.148 0.852 39 H 0.158 0.842 40 H 0.173 0.827 41 H 0.163 0.837 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.297 -19.013 -14.103 23.675 hybrid contribution -0.845 1.454 0.508 1.757 sum -1.142 -17.559 -13.595 22.236 Atomic orbital electron populations 1.22572 0.95109 1.03058 1.02573 1.19612 0.92823 0.88660 0.92353 1.60680 1.63906 1.01542 1.04775 1.21901 0.97492 0.94110 0.92312 1.21368 0.99884 0.93834 0.97934 1.18952 0.94839 0.94271 0.92983 1.21729 1.34009 0.99056 1.03284 0.92413 1.25973 0.95497 1.03281 0.95090 1.70099 1.41451 1.37918 1.07859 0.85404 0.78252 0.79006 0.78428 1.18702 1.20242 1.20345 1.22341 1.02543 0.95994 0.97952 1.23211 0.95640 0.93595 0.88750 1.85940 1.66327 1.52492 1.19708 1.18976 0.97420 0.90337 0.86322 1.20854 1.05380 1.01621 0.90357 1.21269 0.97222 0.94457 0.97490 1.21333 1.01377 0.95946 0.98838 1.21024 0.98064 0.99572 0.91655 1.19731 1.05968 0.93690 0.95892 0.91982 0.91881 0.91102 0.83638 0.95074 0.91596 0.93318 0.93182 0.98905 0.99036 0.92765 0.89283 0.91384 0.90561 0.85243 0.84217 0.82686 0.83731 0.85545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.82 8.10 71.98 0.58 -3.24 16 2 C 0.16 3.88 0.58 2.83 0.00 3.88 16 3 N -0.68 -19.54 5.89 -473.69 -2.79 -22.33 16 4 C 0.07 2.39 4.90 86.30 0.42 2.81 16 5 C -0.09 -3.85 5.43 30.60 0.17 -3.69 16 6 C 0.03 1.45 4.97 29.85 0.15 1.59 16 7 C -0.54 -31.42 9.11 25.60 0.23 -31.18 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 9 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 10 N -0.93 -57.09 13.29 21.45 0.28 -56.81 16 11 Si 0.96 44.71 29.54 68.60 2.03 46.74 16 12 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 13 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 14 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 15 C -0.15 -3.62 4.05 30.76 0.12 -3.50 16 16 C 0.06 1.24 6.96 72.12 0.50 1.74 16 17 O -0.33 -8.05 10.27 -91.88 -0.94 -9.00 16 18 C 0.11 2.84 6.47 22.52 0.15 2.98 16 19 C -0.16 -3.39 9.94 22.42 0.22 -3.17 16 20 C -0.09 -1.49 10.04 22.22 0.22 -1.27 16 21 C -0.16 -2.88 10.04 22.25 0.22 -2.66 16 22 C -0.08 -1.87 9.17 22.30 0.20 -1.67 16 23 C -0.15 -3.74 4.84 -19.75 -0.10 -3.84 16 24 H 0.06 1.44 6.55 -2.39 -0.02 1.42 16 25 H 0.06 1.33 8.12 -2.38 -0.02 1.31 16 26 H 0.07 1.37 6.65 -2.39 -0.02 1.36 16 27 H 0.34 9.20 7.07 -89.69 -0.63 8.57 16 28 H 0.03 1.04 6.51 -2.39 -0.02 1.02 16 29 H 0.07 2.29 6.41 -2.39 -0.02 2.28 16 30 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 32 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 33 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 34 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 35 H 0.09 2.07 7.01 -2.39 -0.02 2.06 16 36 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.08 1.31 6.57 -2.39 -0.02 1.30 16 38 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 40 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 41 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 42 H 0.13 2.57 6.64 -2.91 -0.02 2.55 16 Total: -1.00 -66.99 330.98 2.52 -64.47 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.37 Total: 17.72 kcal Atomic # 6 Polarization: -44.36 SS G_CDS: 3.57 Total: -40.79 kcal Atomic # 7 Polarization: -76.64 SS G_CDS: -2.51 Total: -79.14 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.94 Total: -9.00 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -66.99 2.52 -64.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933366831.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.995 kcal (2) G-P(sol) polarization free energy of solvation -66.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds