Wall clock time and date at job start Mon Mar 30 2020 02:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.47138 * 2 1 4 4 C 1.50701 * 109.46882 * 180.02562 * 3 2 1 5 5 C 1.37982 * 120.07062 * 261.77673 * 4 3 2 6 6 C 1.38332 * 120.13971 * 180.02562 * 5 4 3 7 7 C 1.38378 * 120.29833 * 359.72439 * 6 5 4 8 8 C 1.37938 * 120.14067 * 0.55868 * 7 6 5 9 9 C 1.39550 * 120.07477 * 81.80141 * 4 3 2 10 10 C 1.47851 * 120.14525 * 359.95715 * 9 4 3 11 11 O 1.21550 * 119.99858 * 354.38701 * 10 9 4 12 12 N 1.34771 * 120.00221 * 174.39054 * 10 9 4 13 13 C 1.46501 * 120.00191 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.46612 * 35.00302 * 13 12 10 15 15 C 1.50697 * 109.47098 * 154.99855 * 13 12 10 16 16 H 1.08001 * 120.00502 * 0.02562 * 15 13 12 17 17 C 1.37878 * 119.99916 * 179.97438 * 15 13 12 18 18 N 1.31505 * 120.00350 * 0.02562 * 17 15 13 19 19 Si 1.86806 * 119.99941 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47161 * 89.99907 * 19 17 15 21 21 H 1.48497 * 109.46997 * 210.00468 * 19 17 15 22 22 H 1.48498 * 109.47149 * 330.00070 * 19 17 15 23 23 C 1.52994 * 109.47184 * 274.99764 * 13 12 10 24 24 C 1.53009 * 109.46827 * 65.00142 * 23 13 12 25 25 H 1.09000 * 109.47396 * 59.99739 * 1 2 3 26 26 H 1.09001 * 109.47517 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47208 * 299.99828 * 1 2 3 28 28 H 1.08997 * 109.46789 * 240.00772 * 2 1 3 29 29 H 1.09000 * 109.47396 * 120.00261 * 2 1 3 30 30 H 1.08997 * 109.46496 * 60.00155 * 3 2 1 31 31 H 1.09000 * 109.47190 * 300.00387 * 3 2 1 32 32 H 1.07997 * 119.92945 * 0.04640 * 5 4 3 33 33 H 1.08006 * 119.84876 * 179.97438 * 6 5 4 34 34 H 1.07996 * 119.93248 * 180.27584 * 7 6 5 35 35 H 1.07997 * 120.07311 * 179.72009 * 8 7 6 36 36 H 0.97002 * 120.00244 * 359.97438 * 12 10 9 37 37 H 0.97000 * 120.00793 * 179.97438 * 18 17 15 38 38 H 1.09002 * 109.47304 * 184.99860 * 23 13 12 39 39 H 1.08995 * 109.47887 * 305.00340 * 23 13 12 40 40 H 1.09003 * 109.47051 * 179.97438 * 24 23 13 41 41 H 1.09002 * 109.46948 * 299.99936 * 24 23 13 42 42 H 1.08998 * 109.46990 * 60.00201 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2389 1.6131 1.1809 6 6 5.6222 1.6138 1.1819 7 6 6.3213 1.4380 0.0007 8 6 5.6417 1.2723 -1.1882 9 6 4.2458 1.2705 -1.1962 10 6 3.5109 1.0867 -2.4660 11 8 2.2999 0.9831 -2.4577 12 7 4.1838 1.0341 -3.6325 13 6 3.4557 0.8515 -4.8906 14 1 2.4976 1.3683 -4.8341 15 6 4.2663 1.4191 -6.0271 16 1 5.2280 1.8703 -5.8319 17 6 3.7809 1.3614 -7.3163 18 7 2.6102 0.8115 -7.5541 19 14 4.7861 2.0643 -8.7252 20 1 5.6723 1.0079 -9.2763 21 1 3.8729 2.5500 -9.7907 22 1 5.6122 3.1939 -8.2285 23 6 3.2171 -0.6407 -5.1298 24 6 2.2909 -1.1897 -4.0427 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8932 -0.5137 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.6993 1.7460 2.1070 33 1 6.1590 1.7481 2.1094 34 1 7.4012 1.4351 0.0090 35 1 6.1884 1.1397 -2.1101 36 1 5.1502 1.1171 -3.6392 37 1 2.2684 0.7712 -8.4610 38 1 2.7549 -0.7827 -6.1067 39 1 4.1690 -1.1707 -5.0977 40 1 2.1205 -2.2527 -4.2133 41 1 2.7531 -1.0477 -3.0658 42 1 1.3389 -0.6598 -4.0748 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935402555.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:28 Heat of formation + Delta-G solvation = -31.882534 kcal Electronic energy + Delta-G solvation = -21844.560531 eV Core-core repulsion = 18788.704232 eV Total energy + Delta-G solvation = -3055.856299 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.04077 -37.96801 -35.39795 -34.43073 -32.47684 -31.46323 -30.88166 -30.19628 -27.07669 -26.13452 -23.69735 -22.84787 -21.92329 -20.89881 -20.04876 -19.31833 -17.67900 -16.17982 -15.75540 -15.36329 -15.04270 -14.65307 -14.62078 -14.18541 -13.80608 -13.58434 -13.21898 -12.91815 -12.67223 -12.41157 -11.88125 -11.86095 -11.71629 -11.47917 -11.34746 -11.23546 -10.98719 -10.86518 -10.82851 -10.63968 -10.39831 -10.20817 -10.03252 -9.60778 -9.04457 -8.84665 -8.77354 -8.57359 -8.49539 -7.75546 -6.12312 -4.21597 1.11597 1.45841 3.24068 3.31254 3.33223 3.40390 4.09659 4.20686 4.38674 4.87554 4.94463 5.00269 5.19065 5.25442 5.36202 5.47272 5.51471 5.64717 5.68602 5.85758 6.02609 6.07171 6.13336 6.21566 6.40113 6.41746 6.45491 6.46552 6.51111 6.54000 6.65146 6.74124 6.88080 7.01973 7.08053 7.22146 7.38439 7.47883 7.63001 7.74823 7.91351 8.18858 8.68355 8.78463 9.14924 9.45963 10.92923 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019598 B = 0.005373 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.406633 B = 5210.294180 C = 6230.214949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C -0.085 4.085 4 C -0.025 4.025 5 C -0.133 4.133 6 C -0.103 4.103 7 C -0.137 4.137 8 C -0.087 4.087 9 C -0.125 4.125 10 C 0.539 3.461 11 O -0.533 6.533 12 N -0.703 5.703 13 C 0.272 3.728 14 H 0.051 0.949 15 C -0.534 4.534 16 H 0.060 0.940 17 C 0.067 3.933 18 N -0.882 5.882 19 Si 0.900 3.100 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.127 4.127 24 C -0.136 4.136 25 H 0.060 0.940 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.076 0.924 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.104 0.896 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.386 0.614 37 H 0.264 0.736 38 H 0.099 0.901 39 H 0.030 0.970 40 H 0.021 0.979 41 H 0.039 0.961 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.786 -0.198 15.150 15.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C -0.122 4.122 4 C -0.026 4.026 5 C -0.151 4.151 6 C -0.122 4.122 7 C -0.155 4.155 8 C -0.106 4.106 9 C -0.128 4.128 10 C 0.325 3.675 11 O -0.413 6.413 12 N -0.350 5.350 13 C 0.170 3.830 14 H 0.068 0.932 15 C -0.573 4.573 16 H 0.078 0.922 17 C -0.136 4.136 18 N -0.519 5.519 19 Si 0.727 3.273 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.166 4.166 24 C -0.194 4.194 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.219 0.781 37 H 0.074 0.926 38 H 0.117 0.883 39 H 0.048 0.952 40 H 0.040 0.960 41 H 0.058 0.942 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.771 -0.316 14.933 15.191 hybrid contribution 1.220 0.367 -0.775 1.491 sum 3.991 0.051 14.158 14.709 Atomic orbital electron populations 1.21690 0.96078 1.00996 1.01445 1.21351 0.95515 0.95817 1.01646 1.20842 0.89629 0.98494 1.03214 1.20080 0.96622 0.94374 0.91530 1.21013 0.94170 1.02441 0.97479 1.21231 0.94266 0.98645 0.98012 1.21031 0.99855 1.02079 0.92539 1.21391 0.93378 0.97303 0.98486 1.20219 0.93595 1.04398 0.94570 1.18148 0.87521 0.78180 0.83616 1.90687 1.13323 1.50460 1.86810 1.46478 1.10343 1.70811 1.07409 1.18787 0.93183 0.92843 0.78192 0.93160 1.21231 1.04965 1.39447 0.91631 0.92187 1.24868 0.95037 0.94994 0.98682 1.69886 1.17633 1.43368 1.21033 0.86474 0.79830 0.79274 0.81688 1.20563 1.21075 1.19885 1.21930 0.97175 0.97092 1.00387 1.21845 1.00679 0.97698 0.99161 0.92118 0.93353 0.93716 0.90523 0.93709 0.92711 0.87816 0.85951 0.86161 0.85914 0.85551 0.78075 0.92578 0.88322 0.95161 0.96012 0.94157 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.91 37.16 0.37 -1.58 16 2 C -0.11 -1.56 5.44 -26.73 -0.15 -1.71 16 3 C -0.08 -1.26 4.61 -27.88 -0.13 -1.39 16 4 C -0.03 -0.37 5.17 -104.23 -0.54 -0.91 16 5 C -0.13 -1.64 9.66 -39.64 -0.38 -2.02 16 6 C -0.10 -1.14 10.04 -39.50 -0.40 -1.54 16 7 C -0.14 -1.60 10.03 -39.64 -0.40 -2.00 16 8 C -0.09 -1.21 9.53 -39.19 -0.37 -1.58 16 9 C -0.12 -2.04 5.87 -104.97 -0.62 -2.66 16 10 C 0.54 10.62 6.21 -12.33 -0.08 10.54 16 11 O -0.53 -11.48 8.73 5.32 0.05 -11.43 16 12 N -0.70 -14.50 4.97 -55.88 -0.28 -14.77 16 13 C 0.27 6.72 2.24 -69.09 -0.15 6.57 16 14 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 15 C -0.53 -13.97 8.73 -34.44 -0.30 -14.27 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 18 N -0.88 -24.49 11.29 55.43 0.63 -23.86 16 19 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 C -0.13 -3.06 5.45 -26.73 -0.15 -3.20 16 24 C -0.14 -3.00 8.51 37.16 0.32 -2.68 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 1.35 6.57 -51.93 -0.34 1.01 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.69 8.02 -51.93 -0.42 0.28 16 31 H 0.10 1.82 5.96 -51.93 -0.31 1.51 16 32 H 0.12 1.23 8.05 -52.49 -0.42 0.81 16 33 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 34 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.13 1.60 6.45 -52.49 -0.34 1.27 16 36 H 0.39 7.07 6.61 -40.82 -0.27 6.80 16 37 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.04 0.86 5.64 -51.93 -0.29 0.57 16 42 H 0.05 1.18 7.84 -51.93 -0.41 0.78 16 LS Contribution 332.22 15.07 5.01 5.01 Total: -1.00 -28.38 332.22 -9.11 -37.49 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -6.42 Total: 8.83 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -3.07 Total: -16.73 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.35 Total: -38.64 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.05 Total: -11.43 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.38 -9.11 -37.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935402555.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.610 kcal (2) G-P(sol) polarization free energy of solvation -28.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds