Wall clock time and date at job start Mon Mar 30 2020 02:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.47138 * 2 1 4 4 C 1.50701 * 109.46882 * 180.02562 * 3 2 1 5 5 C 1.37982 * 120.07062 * 261.77673 * 4 3 2 6 6 C 1.38332 * 120.13971 * 180.02562 * 5 4 3 7 7 C 1.38378 * 120.29833 * 359.72439 * 6 5 4 8 8 C 1.37938 * 120.14067 * 0.55868 * 7 6 5 9 9 C 1.39550 * 120.07477 * 81.80141 * 4 3 2 10 10 C 1.47851 * 120.14525 * 359.95715 * 9 4 3 11 11 O 1.21550 * 119.99858 * 354.38701 * 10 9 4 12 12 N 1.34771 * 120.00221 * 174.39054 * 10 9 4 13 13 C 1.46501 * 120.00191 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.46612 * 35.00302 * 13 12 10 15 15 C 1.50697 * 109.47098 * 154.99855 * 13 12 10 16 16 H 1.08001 * 120.00502 * 0.02562 * 15 13 12 17 17 C 1.37878 * 119.99916 * 179.97438 * 15 13 12 18 18 N 1.31505 * 120.00350 * 0.02562 * 17 15 13 19 19 Si 1.86806 * 119.99941 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47161 * 89.99907 * 19 17 15 21 21 H 1.48497 * 109.46997 * 210.00468 * 19 17 15 22 22 H 1.48498 * 109.47149 * 330.00070 * 19 17 15 23 23 C 1.52994 * 109.47184 * 274.99764 * 13 12 10 24 24 C 1.53009 * 109.46827 * 65.00142 * 23 13 12 25 25 H 1.09000 * 109.47396 * 59.99739 * 1 2 3 26 26 H 1.09001 * 109.47517 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47208 * 299.99828 * 1 2 3 28 28 H 1.08997 * 109.46789 * 240.00772 * 2 1 3 29 29 H 1.09000 * 109.47396 * 120.00261 * 2 1 3 30 30 H 1.08997 * 109.46496 * 60.00155 * 3 2 1 31 31 H 1.09000 * 109.47190 * 300.00387 * 3 2 1 32 32 H 1.07997 * 119.92945 * 0.04640 * 5 4 3 33 33 H 1.08006 * 119.84876 * 179.97438 * 6 5 4 34 34 H 1.07996 * 119.93248 * 180.27584 * 7 6 5 35 35 H 1.07997 * 120.07311 * 179.72009 * 8 7 6 36 36 H 0.97002 * 120.00244 * 359.97438 * 12 10 9 37 37 H 0.97000 * 120.00793 * 179.97438 * 18 17 15 38 38 H 1.09002 * 109.47304 * 184.99860 * 23 13 12 39 39 H 1.08995 * 109.47887 * 305.00340 * 23 13 12 40 40 H 1.09003 * 109.47051 * 179.97438 * 24 23 13 41 41 H 1.09002 * 109.46948 * 299.99936 * 24 23 13 42 42 H 1.08998 * 109.46990 * 60.00201 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2389 1.6131 1.1809 6 6 5.6222 1.6138 1.1819 7 6 6.3213 1.4380 0.0007 8 6 5.6417 1.2723 -1.1882 9 6 4.2458 1.2705 -1.1962 10 6 3.5109 1.0867 -2.4660 11 8 2.2999 0.9831 -2.4577 12 7 4.1838 1.0341 -3.6325 13 6 3.4557 0.8515 -4.8906 14 1 2.4976 1.3683 -4.8341 15 6 4.2663 1.4191 -6.0271 16 1 5.2280 1.8703 -5.8319 17 6 3.7809 1.3614 -7.3163 18 7 2.6102 0.8115 -7.5541 19 14 4.7861 2.0643 -8.7252 20 1 5.6723 1.0079 -9.2763 21 1 3.8729 2.5500 -9.7907 22 1 5.6122 3.1939 -8.2285 23 6 3.2171 -0.6407 -5.1298 24 6 2.2909 -1.1897 -4.0427 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8932 -0.5137 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.6993 1.7460 2.1070 33 1 6.1590 1.7481 2.1094 34 1 7.4012 1.4351 0.0090 35 1 6.1884 1.1397 -2.1101 36 1 5.1502 1.1171 -3.6392 37 1 2.2684 0.7712 -8.4610 38 1 2.7549 -0.7827 -6.1067 39 1 4.1690 -1.1707 -5.0977 40 1 2.1205 -2.2527 -4.2133 41 1 2.7531 -1.0477 -3.0658 42 1 1.3389 -0.6598 -4.0748 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935402555.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:28 Heat of formation + Delta-G solvation = -46.875043 kcal Electronic energy + Delta-G solvation = -21845.210655 eV Core-core repulsion = 18788.704232 eV Total energy + Delta-G solvation = -3056.506423 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.35274 -39.31614 -37.01956 -35.78884 -34.26431 -33.12562 -31.93044 -31.58652 -28.93060 -27.32607 -25.28294 -24.37433 -23.04294 -22.32273 -21.38651 -21.07767 -19.19919 -17.83671 -17.25236 -16.71290 -16.31433 -16.27313 -16.12648 -15.55169 -15.09088 -14.68108 -14.58580 -14.46176 -14.29308 -13.71397 -13.47100 -13.21609 -13.17559 -12.99742 -12.87477 -12.74958 -12.65972 -12.37185 -12.17193 -12.07558 -11.97114 -11.69662 -11.56729 -11.37859 -11.04019 -10.55198 -10.30380 -9.87730 -9.66759 -9.44475 -8.16199 -6.33462 0.02578 0.47399 1.43822 1.44481 1.54827 2.13331 2.36322 2.68296 2.98959 3.13438 3.86765 3.90598 3.98812 4.18502 4.28754 4.34771 4.49678 4.51918 4.56179 4.57968 4.62058 4.76782 4.82631 4.94152 4.99372 5.06916 5.07184 5.10320 5.25328 5.32977 5.41911 5.43181 5.46375 5.50705 5.55887 5.56737 5.66722 5.78749 5.80859 5.96034 6.06474 6.18015 6.74485 7.03507 7.33858 7.61838 8.89046 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019598 B = 0.005373 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.406633 B = 5210.294180 C = 6230.214949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.101 4.101 3 C -0.081 4.081 4 C -0.041 4.041 5 C -0.132 4.132 6 C -0.089 4.089 7 C -0.133 4.133 8 C -0.095 4.095 9 C -0.154 4.154 10 C 0.534 3.466 11 O -0.559 6.559 12 N -0.705 5.705 13 C 0.282 3.718 14 H 0.000 1.000 15 C -0.549 4.549 16 H 0.068 0.932 17 C 0.017 3.983 18 N -0.914 5.914 19 Si 0.969 3.031 20 H -0.271 1.271 21 H -0.286 1.286 22 H -0.266 1.266 23 C -0.119 4.119 24 C -0.120 4.120 25 H 0.035 0.965 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.040 0.960 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.150 0.850 33 H 0.160 0.840 34 H 0.155 0.845 35 H 0.131 0.869 36 H 0.397 0.603 37 H 0.265 0.735 38 H 0.071 0.929 39 H 0.036 0.964 40 H 0.041 0.959 41 H 0.043 0.957 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.219 0.077 17.609 18.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.139 4.139 3 C -0.118 4.118 4 C -0.042 4.042 5 C -0.150 4.150 6 C -0.107 4.107 7 C -0.150 4.150 8 C -0.114 4.114 9 C -0.157 4.157 10 C 0.322 3.678 11 O -0.440 6.440 12 N -0.354 5.354 13 C 0.179 3.821 14 H 0.018 0.982 15 C -0.587 4.587 16 H 0.086 0.914 17 C -0.183 4.183 18 N -0.552 5.552 19 Si 0.794 3.206 20 H -0.196 1.196 21 H -0.212 1.212 22 H -0.190 1.190 23 C -0.158 4.158 24 C -0.177 4.177 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.168 0.832 33 H 0.178 0.822 34 H 0.173 0.827 35 H 0.149 0.851 36 H 0.233 0.767 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 5.227 -0.039 17.419 18.187 hybrid contribution 0.465 0.301 -1.420 1.524 sum 5.692 0.262 15.999 16.983 Atomic orbital electron populations 1.21660 0.95361 1.01490 1.01346 1.21281 0.96164 0.95721 1.00720 1.20737 0.90297 0.98233 1.02539 1.20201 0.96487 0.95289 0.92192 1.21329 0.95056 1.01363 0.97222 1.21727 0.93854 0.95817 0.99316 1.21426 1.01507 1.00452 0.91664 1.21545 0.92323 0.97439 1.00047 1.20001 0.94685 1.07956 0.93075 1.18785 0.87483 0.77014 0.84495 1.90682 1.14713 1.51263 1.87378 1.46235 1.10748 1.71825 1.06600 1.18331 0.91336 0.92520 0.79945 0.98230 1.21569 1.05333 1.39543 0.92281 0.91380 1.25741 0.96009 0.95234 1.01313 1.70040 1.19242 1.44416 1.21526 0.85393 0.78259 0.78776 0.78196 1.19639 1.21190 1.19042 1.21771 0.97511 0.97021 0.99528 1.21653 0.99016 0.98404 0.98631 0.94625 0.92588 0.91314 0.94091 0.91734 0.90169 0.91523 0.83213 0.82216 0.82720 0.85124 0.76732 0.92605 0.91017 0.94473 0.93977 0.93787 0.95331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 9.91 71.98 0.71 -3.11 16 2 C -0.10 -3.01 5.44 30.60 0.17 -2.84 16 3 C -0.08 -2.41 4.61 29.85 0.14 -2.28 16 4 C -0.04 -1.17 5.17 -19.61 -0.10 -1.27 16 5 C -0.13 -2.77 9.66 22.23 0.21 -2.55 16 6 C -0.09 -1.54 10.04 22.33 0.22 -1.32 16 7 C -0.13 -2.58 10.03 22.23 0.22 -2.35 16 8 C -0.09 -2.49 9.53 22.53 0.21 -2.27 16 9 C -0.15 -5.05 5.87 -20.09 -0.12 -5.16 16 10 C 0.53 22.04 6.21 86.79 0.54 22.58 16 11 O -0.56 -25.87 8.73 -3.87 -0.03 -25.90 16 12 N -0.70 -30.30 4.97 -448.99 -2.23 -32.54 16 13 C 0.28 14.69 2.24 44.24 0.10 14.79 16 14 H 0.00 -0.01 7.58 -2.39 -0.02 -0.03 16 15 C -0.55 -29.47 8.73 25.60 0.22 -29.24 16 16 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 17 C 0.02 0.93 5.29 84.66 0.45 1.38 16 18 N -0.91 -52.65 11.29 21.45 0.24 -52.41 16 19 Si 0.97 42.42 29.54 68.60 2.03 44.45 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 21 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 23 C -0.12 -5.99 5.45 30.60 0.17 -5.83 16 24 C -0.12 -5.50 8.51 71.99 0.61 -4.89 16 25 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.04 1.50 6.57 -2.39 -0.02 1.48 16 29 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.08 1.91 8.02 -2.39 -0.02 1.89 16 31 H 0.07 2.49 5.96 -2.39 -0.01 2.47 16 32 H 0.15 2.29 8.05 -2.91 -0.02 2.27 16 33 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 34 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 35 H 0.13 3.18 6.45 -2.91 -0.02 3.16 16 36 H 0.40 14.89 6.61 -92.71 -0.61 14.27 16 37 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 38 H 0.07 4.01 5.95 -2.39 -0.01 4.00 16 39 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.04 1.97 5.64 -2.39 -0.01 1.95 16 42 H 0.03 1.40 7.84 -2.39 -0.02 1.38 16 Total: -1.00 -65.43 332.22 4.16 -61.27 By element: Atomic # 1 Polarization: 29.09 SS G_CDS: 0.40 Total: 29.49 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: 3.76 Total: -24.36 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -1.99 Total: -84.94 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.03 Total: -25.90 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -65.43 4.16 -61.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935402555.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.393 kcal (2) G-P(sol) polarization free energy of solvation -65.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds